Genetic Characterization of Avian Paramyxovirus Isolated from Wild Waterfowl in Korea between 2015 and 2021
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Sample Collection and Preparation
2.2. Virus Isolation and Detection
2.3. Sequencing and Phylogenetic Analysis
2.4. Host Species Identification
2.5. Accession Number
3. Results
3.1. Virus Detection and Identification
3.2. Genetic Characterization of AMPV-1
3.3. Genetic Characterization of AMPV-13
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Conflicts of Interest
References
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No. | Isolate | Abbreviation | Year | Location | Species | Virus | Class | Sub-Genotype (Current/ Former) | Fusion Gene Cleavage Site (112–117) | Accession Number |
---|---|---|---|---|---|---|---|---|---|---|
1 | Mandarin duck/Korea/201/2016 | 201 | 2016 | Chungnam | Mandarin duck (Aix galericulata) | APMV-1 | II | I.2/Ib | GKQGR↓L | MW464627 |
2 | Mandarin duck/Korea/226/2016 | 226 | 2016 | Chungnam | Mandarin duck (Aix galericulata) | APMV-1 | II | I.2/Ib | GKQGR↓L | MW464628 |
3 | Mandarin duck/Korea/231/2016 | 231 | 2016 | Chungnam | Mandarin duck (Aix galericulata) | APMV-1 | II | I.2/Ib | GKQGR↓L | MW464629 |
4 | Mallard/Korea/92-1/2017 | 92-1 | 2017 | Jeonbuk | Mallard (Anas platyrhynchos) | APMV-1 | II | I.2/Ib | GKQGR↓L | MW464630 |
5 | Indian spot-billed duck/Korea/92-8/2017 | 92-8 | 2017 | Jeonbuk | Indian spot-billed duck (Anas poecilorhyncha) | APMV-1 | II | I.2/Ib | GKQGR↓L | MW464631 |
6 | Mallard/Korea/1310-4-4/2020 | 1310-4-4 | 2020 | Chungnam | Mallard (Anas platyrhynchos) | APMV-1 | II | I.2/Ib | GKQGR↓L | MW464632 |
7 | Eurasian teal/Korea/1689-3-1/2020 | 1689-3-1 | 2020 | Chungnam | Eurasian teal (Anas crecca) | APMV-1 | II | I.2/Ib | GKQGR↓L | MW464633 |
8 | Mandarin duck/Korea/2128-2/2020 | 2128-2 | 2020 | Jeonbuk | Mandarin duck (Aix galericulata) | APMV-1 | II | I.2/Ib | EKQGR↓L | MW464634 |
9 | Mandarin duck/Korea/2129-1/2020 | 2129-1 | 2020 | Jeonbuk | Mandarin duck (Aix galericulata) | APMV-1 | II | I.2/Ib | EKQGR↓L | MW464635 |
10 | Mandarin duck/Korea/2132-5/2020 | 2132-5 | 2020 | Jeonbuk | Mandarin duck (Aix galericulata) | APMV-1 | II | I.2/Ib | EKQGR↓L | MW464636 |
11 | Taiga bean-goose/Korea/209-2/2021 | 209-2 | 2021 | Jeonbuk | Taiga bean-goose (Anser fabalis) | APMV-1 | I | 1.2/1c | ERQER↓L | MZ579651 |
12 | Taiga bean-goose/Korea/209-5/2021 | 209-5 | 2021 | Jeonbuk | Taiga bean-goose (Anser fabalis) | APMV-1 | I | 1.2/1c | ERQER↓L | MZ579652 |
13 | Greater white-fronted goose/Korea/824-5/2021 | 824-5 | 2021 | Chungnam | Greater white-fronted goose (Anser albifrons) | APMV-1 | I | 1.2/1c | ERQER↓L | MZ579653 |
14 | Greater white-fronted goose/Korea/29-9/2017 | 29-9 | 2017 | Jeonbuk | Greater white-fronted goose (Anser albifrons) | APMV-13 | - | - | VRENR↓L | MW492545 |
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Lee, Y.-J.; Park, J.-Y.; Shang, K.; Zhang, J.-F.; Choi, Y.-R.; Kim, S.-W.; Cha, S.-Y.; Kang, M.; Wei, B.; Jang, H.-K. Genetic Characterization of Avian Paramyxovirus Isolated from Wild Waterfowl in Korea between 2015 and 2021. Animals 2024, 14, 780. https://doi.org/10.3390/ani14050780
Lee Y-J, Park J-Y, Shang K, Zhang J-F, Choi Y-R, Kim S-W, Cha S-Y, Kang M, Wei B, Jang H-K. Genetic Characterization of Avian Paramyxovirus Isolated from Wild Waterfowl in Korea between 2015 and 2021. Animals. 2024; 14(5):780. https://doi.org/10.3390/ani14050780
Chicago/Turabian StyleLee, Yea-Jin, Jong-Yeol Park, Ke Shang, Jun-Feng Zhang, Yu-Ri Choi, Sang-Won Kim, Se-Yeoun Cha, Min Kang, Bai Wei, and Hyung-Kwan Jang. 2024. "Genetic Characterization of Avian Paramyxovirus Isolated from Wild Waterfowl in Korea between 2015 and 2021" Animals 14, no. 5: 780. https://doi.org/10.3390/ani14050780