Microsatellite Diversity and Phylogenetic Relationships among East Eurasian Bos taurus Breeds with an Emphasis on Rare and Ancient Local Cattle
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Sample Information and Microsatellite Data
2.2. DNA Extraction and Fragment Analysis
2.3. Statistical Analysis
3. Results
3.1. Genetic Variability
3.2. Pairwise Fst and Ast Values
3.3. Wright’s F Statistics for Each Locus
3.4. Bayesian Clustering Analysis
3.5. Phylogenetic Analysis
4. Discussion
5. Conclusions
Author Contributions
Funding
Conflicts of Interest
Ethical Statement
Appendix A
Locus and Source Reference | Position on Chromosome | Repeating Sequences | Sequences Forward (F) and Inverse (R) Primers | Length of Amplicons (bp) |
---|---|---|---|---|
BM1824 [68] | D1S34 | (GT)n | F: GAGCAAGGTGTTTTTCCAATC R: CATTCTCCAACTGCTTCCTTG | 176–188 |
BM2113 [69] | D2S26 | (CA)n | F: GCTGCCTTCTACCAAATACCC R: CTTCCTGAGAGAAGCAACACC | 124–146 |
CSRM60 [70] | D10S5 | (AC)n | F: AAGATGTGATCCAAGAGAGAGGCA R: AGGACCAGATCGTGAAAGGCATAG | 91–117 |
CSSM66 [68] | D14S31 | (AC)n | F: AATTTAATGCACTGAGGAGCTTGG R: ACACAAATCCTTTCTGCCAGCTGA | 177–203 |
ETH3 [71] | D19S2 | (GT)nAC(GT)6 | F: GAACCTGCCTCTCCTGCATTGG R: ACTCTGCCTGTGGCCAAGTAGG | 100–128 |
ETH10 [71] | D5S3 | (AC)n | F: GTTCAGGACTGGCCCTGCTAACA R: CCTCCAGCCCACTTTCTCTTCTC | 206–222 |
ETH225 [72] | D9S2 | (TG)4CG(TG)(CA)n | F: GATCACCTTGCCACTATTTCCT R: ACATGACAGCCAGCTGCTACT | 139–157 |
ILSTS006 [73] | D7S8 | (GT)n | F: TGTCTGTATTTCTGCTGTGG R: ACACGGAAGCGATCTAAACG | 279–297 |
INRA023 [74] | D3S10 | (AC)n | F: GAGTAGAGCTACAAGATAAACTTC R: TAACTACAGGGTGTTAGATGAACTC | 201–225 |
SPS115 [75] | D15 | (CA)nTA(CA)6 | F: AAAGTGACACAACAGCTTCACCAG R: AACCGAGTGTCCTAGTTTGGCTGTG | 247–261 |
TGLA53 [76] | D16S3 | (TG)6CG(TG)4(TA)n | F: GCTTTCAGAAATAGTTTGCATTCA R: ATCTTCACATGATATTACAGCAGA | 151–187 |
TGLA122 [76] | D21S6 | (AC)n(AT)n | F: AATCACATGGCAAATAAGTACATAC R: CCCTCCTCCAGGTAAATCAGC | 136–182 |
TGLA126 [76] | D20S1 | (TG)n | F: CTAATTTAGAATGAGAGAGGCTTCT R: TTGGTCCTCTATTCTCTGAATATTCC | 111–127 |
TGLA227 [76] | D18S1 | (TG)n | F: GGAATTCCAAATCTGTTAATTTGCT R: ACAGACAGAAACTCAATGAAAGCA | 76–104 |
Breed | ETH3 | CSSM66 | INRA023 | ILSTS006 | TGLA227 | TGLA126 | TGLA122 | SPS115 | ETH225 | TGLA53 | CSRM60 | BM2113 | BM1824 | ETH10 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Holst | 0.142 | 0.743 | 0.546 | 0.617 | 0.721 | 0.429 | 0.479 | 0.433 | 0.394 | 0.134 | 0.986 | 0.77 | 0.225 | 0.849 |
Tagil | 0.354 | 0.411 | 0.969 | 0.411 | 0.493 | 0.559 | 0.595 | 0.293 | 0.133 | 0.28 | 0.725 | 0.465 | 0.342 | 0.298 |
Kholm | 0.325 | 0.348 | 0.141 | 0.844 | 0.058 | 0.818 | 0.181 | 0.277 | 0.106 | 0.114 | 0.794 | 0.646 | 0.673 | 0.212 |
RedGor | 0.6 | 0.267 | 0.241 | 0.668 | 0.5 | 0.005 | 0.282 | 0.614 | 0.767 | 0.776 | 0.502 | 0.832 | 0.282 | 0.45 |
BrSwis | 0.102 | 0 | 0.314 | 0.004 | 0 | 0.025 | 0.001 | 0.623 | 0.001 | 0 | 0.006 | 0 | 0.07 | 0.163 |
Grey | 0.321 | 0.331 | 0.764 | 0.341 | 0.737 | 0.889 | 0.844 | 0.184 | 0.295 | 0.917 | 0.457 | 0.666 | 0.14 | 0.57 |
Yaros | 0.212 | 0.224 | 0.986 | 0.135 | 0.322 | 0.865 | 0.867 | 0.352 | 0.186 | 0.182 | 0.155 | 0.855 | 0.559 | 0.294 |
Kostr | 0.497 | 0.562 | 0.025 | 0.625 | 0.092 | 1 | 0.397 | 0.701 | 0.169 | 0.267 | 0.233 | 0.823 | 0.1 | 0.364 |
Altai | 0.008 | 0.301 | 0.012 | 0.257 | 0.409 | 0.694 | 0.914 | 0.029 | 0.538 | 0.282 | 0.911 | 0.84 | 0.953 | 0.494 |
Kalm | 0.464 | 0.084 | 0.048 | 0.491 | 0.473 | 0.239 | 0.555 | 0.103 | 0.184 | 0.122 | 0.565 | 0.165 | 0.098 | 0.861 |
AulieAt | 0.799 | 0.09 | 0.182 | 0.071 | 0.405 | 0.391 | 0.74 | 0.333 | 0.321 | 0.844 | 0.808 | 0.054 | 0.694 | 0.68 |
Alatau | 0.844 | 0.207 | 0.334 | 0.975 | 0.647 | 0.652 | 0.015 | 0.094 | 0.247 | 0.015 | 0.626 | 0.5 | 0.594 | 0.527 |
KyrgBT | 0.089 | 0.909 | 0.319 | 0.837 | 0.504 | 0.007 | 0.121 | 0.027 | 0.337 | 0.483 | 0.22 | 0.712 | 0.888 | 0.32 |
KyrgNat | 0.094 | 0.465 | 0.898 | 0.218 | 0.53 | 0.541 | 0.927 | 0.337 | 0.418 | 0.372 | 0.304 | 0.731 | 0.833 | 0.927 |
Yakut | 0.085 | 0.785 | 0.359 | 0.918 | 0.018 | 0.981 | 0.005 | 1 | 0.619 | 0.755 | 0.619 | 0.9 | 0.559 | 0.91 |
Khogor | 0.345 | 0.912 | 0.269 | 0.005 | 0.095 | 0.115 | 0.037 | 0.155 | 0.605 | 0.465 | 0.186 | 0.697 | 0.456 | 0.348 |
Gobi | 0.301 | 0.392 | 0.25 | 0.067 | 0.156 | 0.579 | 0.457 | 0.146 | 0.248 | 0.595 | 0.84 | 0.388 | 0.14 | 0.315 |
Buryat | 0.761 | 0.133 | 0.552 | 0 | 0.898 | 0.321 | 0.017 | 0.819 | 0.034 | 0.048 | 0.322 | 0.029 | 0.969 | 0.578 |
Breed | ETH3 | CSSM66 | INRA023 | ILSTS006 | TGLA227 | TGLA126 | TGLA122 | SPS115 | ETH225 | TGLA53 | CSRM60 | BM2113 | BM1824 | ETH10 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Holst | 0.628 | 0.731 | 0.713 | 0.534 | 0.789 | 0.542 | 0.826 | 0.545 | 0.644 | 0.805 | 0.646 | 0.662 | 0.633 | 0.660 |
Tagil | 0.646 | 0.803 | 0.668 | 0.726 | 0.850 | 0.564 | 0.856 | 0.603 | 0.723 | 0.851 | 0.632 | 0.783 | 0.695 | 0.721 |
Kholm | 0.710 | 0.736 | 0.788 | 0.727 | 0.774 | 0.705 | 0.533 | 0.700 | 0.550 | 0.869 | 0.633 | 0.728 | 0.637 | 0.592 |
RedGor | 0.704 | 0.788 | 0.725 | 0.737 | 0.787 | 0.558 | 0.757 | 0.399 | 0.771 | 0.804 | 0.637 | 0.759 | 0.745 | 0.601 |
BrSwis | 0.590 | 0.771 | 0.492 | 0.723 | 0.830 | 0.462 | 0.552 | 0.471 | 0.785 | 0.862 | 0.638 | 0.682 | 0.636 | 0.676 |
Grey | 0.621 | 0.627 | 0.776 | 0.672 | 0.519 | 0.544 | 0.626 | 0.481 | 0.450 | 0.581 | 0.696 | 0.769 | 0.571 | 0.505 |
Yaros | 0.671 | 0.784 | 0.693 | 0.683 | 0.737 | 0.579 | 0.746 | 0.260 | 0.733 | 0.661 | 0.763 | 0.705 | 0.608 | 0.617 |
Kostr | 0.445 | 0.822 | 0.629 | 0.666 | 0.804 | 0.386 | 0.655 | 0.541 | 0.649 | 0.784 | 0.571 | 0.745 | 0.559 | 0.571 |
Altai | 0.462 | 0.642 | 0.725 | 0.528 | 0.784 | 0.467 | 0.666 | 0.637 | 0.680 | 0.881 | 0.726 | 0.723 | 0.677 | 0.684 |
Kalm | 0.750 | 0.806 | 0.832 | 0.736 | 0.806 | 0.692 | 0.746 | 0.630 | 0.780 | 0.871 | 0.769 | 0.843 | 0.659 | 0.614 |
AulieAt | 0.710 | 0.851 | 0.705 | 0.734 | 0.852 | 0.550 | 0.635 | 0.645 | 0.719 | 0.833 | 0.734 | 0.789 | 0.687 | 0.771 |
Alatau | 0.720 | 0.820 | 0.705 | 0.734 | 0.862 | 0.589 | 0.803 | 0.555 | 0.738 | 0.874 | 0.638 | 0.806 | 0.704 | 0.718 |
KyrgBT | 0.575 | 0.838 | 0.755 | 0.722 | 0.844 | 0.586 | 0.728 | 0.572 | 0.683 | 0.806 | 0.734 | 0.774 | 0.676 | 0.604 |
KyrgNat | 0.662 | 0.800 | 0.690 | 0.726 | 0.852 | 0.568 | 0.827 | 0.653 | 0.743 | 0.882 | 0.635 | 0.822 | 0.700 | 0.653 |
Yakut | 0.563 | 0.629 | 0.371 | 0.675 | 0.688 | 0.667 | 0.455 | 0.303 | 0.651 | 0.538 | 0.482 | 0.627 | 0.240 | 0.540 |
Khogor | 0.597 | 0.782 | 0.632 | 0.559 | 0.791 | 0.536 | 0.812 | 0.581 | 0.544 | 0.794 | 0.812 | 0.668 | 0.411 | 0.550 |
Gobi | 0.677 | 0.698 | 0.717 | 0.729 | 0.858 | 0.547 | 0.687 | 0.619 | 0.716 | 0.838 | 0.808 | 0.762 | 0.669 | 0.600 |
Buryat | 0.728 | 0.768 | 0.810 | 0.709 | 0.856 | 0.632 | 0.804 | 0.691 | 0.706 | 0.911 | 0.727 | 0.765 | 0.660 | 0.658 |
Overall | 0.740 | 0.837 | 0.790 | 0.763 | 0.870 | 0.643 | 0.822 | 0.647 | 0.759 | 0.903 | 0.756 | 0.817 | 0.706 | 0.692 |
Breed | Holst | Tagil | Kholm | RedGor | BrSwis | Grey | Yaros | Kostr | Altai | Kalm | AulieAt | Alatau | KyrgBT | KyrgNat | Yakut | Khogor | Gobi |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Tagil | 0.0163 | ||||||||||||||||
Kholm | 0.0333 | 0.0325 | |||||||||||||||
RedGor | 0.033 | 0.0268 | 0.0417 | ||||||||||||||
BrSwis | 0.0329 | 0.0321 | 0.0558 | 0.0431 | |||||||||||||
Grey | 0.047 | 0.0628 | 0.0665 | 0.0779 | 0.0876 | ||||||||||||
Yaros | 0.0498 | 0.0407 | 0.0583 | 0.0468 | 0.0587 | 0.0922 | |||||||||||
Kostr | 0.0229 | 0.0367 | 0.0567 | 0.0416 | 0.0319 | 0.087 | 0.0654 | ||||||||||
Altai | 0.0268 | 0.0359 | 0.0522 | 0.0372 | 0.0426 | 0.0836 | 0.0588 | 0.0489 | |||||||||
Kalm | 0.0268 | 0.0155 | 0.0322 | 0.0291 | 0.0306 | 0.0652 | 0.0341 | 0.0351 | 0.0323 | ||||||||
AulieAt | 0.0208 | 0.0182 | 0.0312 | 0.0308 | 0.0311 | 0.0687 | 0.0476 | 0.0275 | 0.0348 | 0.0204 | |||||||
Alatau | 0.0235 | 0.0193 | 0.0398 | 0.0283 | 0.0276 | 0.071 | 0.0508 | 0.0244 | 0.025 | 0.0163 | 0.0198 | ||||||
KyrgBT | 0.0301 | 0.0281 | 0.0472 | 0.0311 | 0.0304 | 0.0658 | 0.0587 | 0.0231 | 0.0298 | 0.028 | 0.0272 | 0.0136 *** | |||||
KyrgNat | 0.0267 | 0.0198 | 0.0402 | 0.031 | 0.0291 | 0.0696 | 0.0535 | 0.0271 | 0.0291 | 0.0156 | 0.0204 | 0.0049* | 0.0147 | ||||
Yakut | 0.0634 | 0.0796 | 0.0953 | 0.1 | 0.1161 | 0.1459 | 0.1127 | 0.1527 | 0.1275 | 0.0761 | 0.0913 | 0.0912 | 0.1102 | 0.0803 | |||
Khogor | 0.0512 | 0.0409 | 0.0645 | 0.059 | 0.0762 | 0.1074 | 0.0667 | 0.0815 | 0.0642 | 0.0352 | 0.0523 | 0.0503 | 0.0695 | 0.0487 | 0.0763 | ||
Gobi | 0.0338 | 0.0238 | 0.05 | 0.0342 | 0.0525 | 0.066 | 0.0531 | 0.0494 | 0.0369 | 0.0209 | 0.0328 | 0.0266 | 0.0391 | 0.0251 | 0.0675 | 0.0299 | |
Buryat | 0.0385 | 0.0087 * | 0.0173 | 0.0188 | 0.0218 | 0.0317 | 0.0242 | 0.0127 ** | 0.0118 ** | 0.0073 * | 0.0108 ** | 0.0097 * | 0.0165 | 0.0094 * | 0.0231 | 0.0136 ** | 0.0089 * |
Holst | Tagil | Kholm | RedGor | BrSwis | Grey | Yaros | Kostr | Altai | Kalm | AulieAt | Alatau | KyrgBT | KyrgNat | Yakut | Khogor | Gobi | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Tagil | 18.5 | ||||||||||||||||
Kholm | 19.5 | 20 | |||||||||||||||
RedGor | 18.5 | 21 | 22 | ||||||||||||||
BrSwis | 19.5 | 25 | 21 | 21 | |||||||||||||
Grey | 29.5 * | 30 * | 28 * | 31 * | 25 | ||||||||||||
Yaros | 24.5 | 25 | 23 | 22 | 23 | 31 ** | |||||||||||
Kostr | 25 | 24.5 | 18.5 | 23.5 | 18.5 | 26.5 * | 22.5 | ||||||||||
Altai | 24.5 | 29 * | 22 | 23 | 23 | 27 * | 23 | 21.5 | |||||||||
Kalm | 29.5 * | 24 | 24 | 21 | 31 ** | 35 ** | 29 * | 28.5 * | 27 * | ||||||||
AulieAt | 23.5 | 24 | 29 * | 22 | 32 ** | 33 ** | 29 * | 31.5 ** | 30 ** | 25 * | |||||||
Alatau | 26 | 25.5 | 27.5 * | 23.5 | 29.5* | 36.5** | 27.5* | 27 * | 28.5 ** | 16.5 | 21.5 | ||||||
KyrgBT | 24.5 | 19 | 17 | 22 | 26 * | 33 ** | 25 * | 23.5 | 26 * | 23 | 23 | 19.5 | |||||
KyrgNat | 28 | 23.5 | 25.5 | 19.5 | 27.5 * | 36.5 ** | 29.5 * | 26 * | 27.5 * | 19.5 | 23.5 | 14 | 19.5 | ||||
Yakut | 30 * | 29.5 * | 23.5 | 30.5 * | 25.5 | 30.5 ** | 24.5 | 27 ** | 26.5 * | 37.5 ** | 39.5 ** | 39 ** | 32.5 ** | 39 ** | |||
Khogor | 28 | 26.5 | 27.5 * | 26.5 | 25.5 | 31.5 * | 26.5 * | 28 * | 28.5 ** | 30.5 ** | 27.5 ** | 28 ** | 26.5 ** | 28 ** | 29 ** | ||
Gobi | 26.5 | 24 | 22 | 20 | 22 | 30 * | 25 | 20.5 | 20 | 23 | 28 ** | 22.5 | 23 | 22.5 | 26.5 * | 20.5 | |
Buryat | 34.5 * | 29 | 35 * | 32 * | 41 ** | 45 ** | 38 ** | 38.5 ** | 37 ** | 25 | 27 * | 24.5 | 30 ** | 26.5 * | 48.5 ** | 36.5 ** | 33 ** |
Holst | Tagil | Kholm | RedGor | BrSwis | Grey | Yaros | Kostr | Altai | Kalm | AulieAt | Alatau | KyrgBT | KyrgNat | Yakut | Khogor | Gobi | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Tagil | 0.2259 | ||||||||||||||||
Kholm | 0.1895 | 0.2357 | |||||||||||||||
RedGor | 0.2431 | 0.2536 | 0.2524 | ||||||||||||||
BrSwis | 0.2043 | 0.235 | 0.218 | 0.2369 | |||||||||||||
Grey | 0.2067 | 0.2144 | 0.2264 | 0.238 | 0.2058 | ||||||||||||
Yaros | 0.2984 | 0.2935 | 0.2908 | 0.2892 | 0.2976 | 0.2856 | |||||||||||
Kostr | 0.262 | 0.2639 | 0.2349 | 0.2523 | 0.2555 | 0.2679 | 0.315 | ||||||||||
Altai | 0.1809 | 0.2156 | 0.2069 | 0.2467 | 0.1926 | 0.205 | 0.2992 | 0.27 | |||||||||
Kalm | 0.2438 | 0.2828 | 0.2514 | 0.2823 | 0.2452 | 0.2296 | 0.3215 | 0.2706 | 0.248 | ||||||||
AulieAt | 0.234 | 0.2288 | 0.2329 | 0.2441 | 0.228 | 0.244 | 0.2853 | 0.239 | 0.2264 | 0.2806 | |||||||
Alatau | 0.2162 | 0.23 | 0.2392 | 0.2202 | 0.2379 | 0.2228 | 0.29 | 0.2848 | 0.2192 | 0.2882 | 0.2198 | ||||||
KyrgBT | 0.1765 | 0.2322 | 0.2001 | 0.2311 | 0.2048 | 0.2171 | 0.284 | 0.2501 | 0.1978 | 0.2512 | 0.1984 | 0.1989 | |||||
KyrgNat | 0.1602 | 0.2276 | 0.2023 | 0.2363 | 0.2017 | 0.2029 | 0.3028 | 0.2717 | 0.1854 | 0.2465 | 0.2269 | 0.2129 | 0.1799 | ||||
Yakut | 0.2096 | 0.2333 | 0.2048 | 0.2288 | 0.2278 | 0.2166 | 0.2956 | 0.2276 | 0.2075 | 0.2601 | 0.2198 | 0.2367 | 0.2053 | 0.2066 | |||
Khogor | 0.2155 | 0.2486 | 0.1971 | 0.2333 | 0.2017 | 0.2199 | 0.2847 | 0.2098 | 0.2058 | 0.2447 | 0.1971 | 0.2294 | 0.1913 | 0.2091 | 0.195 | ||
Gobi | 0.3141 | 0.3047 | 0.3102 | 0.3118 | 0.2991 | 0.2775 | 0.3447 | 0.3185 | 0.3081 | 0.3132 | 0.2747 | 0.3092 | 0.2982 | 0.3095 | 0.297 | 0.2768 | |
Buryat | 0.2417 | 0.2396 | 0.2509 | 0.2592 | 0.2494 | 0.245 | 0.3089 | 0.2684 | 0.238 | 0.2763 | 0.2459 | 0.2413 | 0.2271 | 0.2584 | 0.233 | 0.2408 | 0.2895 |
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Breed (Code) | Breeding Purpose | Category | n | Location of Sample | Latitude, Longitude |
---|---|---|---|---|---|
European origin | |||||
Brown Swiss (BrSwis) | Dual | IT * | 50 | Kostroma region, Kostroma district (Russia) | 57.77, 40.93 |
Holstein (Holst) | Milk | IT | 176 | Moscow region (Russia) | 55.4, 37.27 |
Kostroma (Kostr) | Dual | RT ** | 20 | Kostroma Region, Kostroma district, (Russia) | 57.77, 40.93 |
Kholmogory (Kholm) | Milk | RT | 50 | Komi republic, Inta (Russia) | 66.03, 60.17 |
Yaroslavl (Yaros) | Milk | RT | 50 | Yaroslavl region, Yaroslavl district (Russia) | 57.73, 39.83 |
Tagil (Tagil) | Milk | Native | 49 | Perm region, Oktyabrsky District (Russia) | 56.51, 57.2 |
Red Gorbatov (RedGor) | Milk | Native | 50 | Nizhny Novgorod region, Pavlovsky district (Russia) | 56.03, 43.16 |
Ukrainian Grey (Grey) | Working | Native | 44 | Altai republic, Shebalinsky district (Russia) | 51.34, 85.41 |
Asian origin | |||||
Aulie-Ata (AulieAt) | Milk | RT | 42 | Talas region, Talas District, (Kyrgyzstan) | 42.76, 71.41 |
Alatau (Alatau) | Dual | RT | 49 | Chui region, Zhayilsky district (Kyrgyzstan) | 42.81, 71.41 |
Kyrgyz Beef-type (KyrgBT) | Meat | Native | 48 | Chui region, Panfilovsky district (Kyrgyzstan) | 42.82, 73.67 |
Kyrgyz native (KyrgNat) | Dual | Native | 49 | Naryn region, At-Bashinsky District (Kyrgyzstan) | 41.24, 76.13 |
Yakut (Yakut) | Dual | Native | 30 | Yakutia republic (Russia) | 67.63, 130.86 |
Altai (Altai) | Dual | Native | 21 | Altai, Ulagan district, Yazula, (Russia) | 50.63, 88.77 |
Kalmyk (Kalm) | Meat | Native | 54 | Kalmykia republic, Yustinsky district (Russia) | 47.11, 45.97 |
Khogorogo (Khogor) | Dual | Native | 50 | Khuvsgul aimag (Mongolia) | 46.00, 105.00 |
Gobi (Gobi) | Milk | Native | 50 | South Gobi aimag (Mongolia) | 43.34, 104.25 |
Buryat (Buryat) | Dual | Native | 24 | Khuvsgul aimag (Mongolia) | 46.00, 105.00 |
10 | Inner Mongolia (China) | 41.13, 116.38 | |||
252 | Buryatia Republic, Dzhidinsky District (Russia) | 50.65, 105.22 |
Breed | N | A | % | Ar | Ho | He | Fis | HWE |
---|---|---|---|---|---|---|---|---|
European origin | ||||||||
Brown Swiss | 49.43 | 79 | 42.27 | 5.29 | 0.77 | 0.7 | −1.00 × 10−1 | 0 × 100 |
Holstein | 176 | 98 | 52.57 | 5.53 | 0.72 | 0.71 | −1.41 × 10−2 | 8.07 × 10−1 |
Kostroma | 20 | 86 | 45.55 | 5.43 | 0.71 | 0.68 | −4.41 × 10−2 | 6.16 × 10−1 |
Kholmogory | 49.86 | 95 | 50.9 | 5.79 | 0.73 | 0.73 | 0 × 100 | 9.80 × 10−2 |
Yaroslavl | 50 | 89 | 48.36 | 5.56 | 0.72 | 0.7 | −2.86 × 10−2 | 6.59 × 10−1 |
Tagil | 48.21 | 113 | 60.19 | 6.69 | 0.77 | 0.76 | −1.32 × 10−2 | 7.04 × 10−2 |
Red Gorbatov | 50 | 109 | 58.02 | 6.21 | 0.78 | 0.73 | −6.85 × 10−2 | 9.99 × 10−1 |
Asian origin | ||||||||
Aulie−Ata | 40.71 | 129 | 69.11 | 7.21 | 0.75 | 0.76 | 1.32 × 10−2 | 5.70 × 10−3 |
Alatau | 49 | 132 | 70.13 | 7.52 | 0.76 | 0.76 | 0 × 100 | 4.58 × 10−1 |
Kyrgyz Beef−type | 48 | 115 | 61.96 | 6.77 | 0.75 | 0.74 | −1.35 × 10−2 | 1.40 × 10−1 |
Kyrgyz native | 48.93 | 128 | 66.93 | 7.23 | 0.77 | 0.76 | −1.32 × 10−2 | 9.75 × 10−1 |
Yakut | 30 | 66 | 35.9 | 4.29 | 0.61 | 0.58 | −5.17 × 10−2 | 9.53 × 10−1 |
Altai | 21 | 87 | 46.71 | 5.57 | 0.71 | 0.7 | −1.43 × 10−2 | 6.60 × 10−1 |
Kalmyk | 54 | 131 | 69.8 | 7.51 | 0.78 | 0.78 | 0 × 100 | 2.00 × 10−4 |
Khogorogo | 50 | 98 | 52.38 | 5.8 | 0.69 | 0.69 | 0 × 100 | 4.51 × 10−2 |
Gobi | 50 | 99 | 52.16 | 6.12 | 0.75 | 0.75 | 0 × 100 | 6.50 × 10−1 |
Buryat | 285.64 | 155 | 81.51 | 7.36 | 0.77 | 0.78 | 1.28 × 10−2 | 0 × 100 |
Breed | % * | Locus | Allele | AF |
---|---|---|---|---|
Grey (1) ** | 11.1 | BM1824 | 176 | 0.011 |
Buryat (9) | CSSM66 | 177 | 0.002 | |
ILSTS006 | 276 | 0.019 | ||
TGLA227 | 69 | 0.009 | ||
TGLA227 | 71 | 0.005 | ||
15.5 | TGLA122 | 137 | 0.002 | |
SPS115 | 238 | 0.002 | ||
ETH225 | 160 | 0.031 | ||
TGLA53 | 190 | 0.007 | ||
BM1824 | 192 | 0.011 | ||
Gobi (1) | 9.7 | TGLA227 | 85 | 0.020 |
Kalm (2) | 18 | TGLA126 | 129 | 0.028 |
CSRM60 | 86 | 0.009 | ||
Khogor (1) | 9.7 | CSRM60 | 88 | 0.040 |
KyrgNat (2) | 19.9 | CSSM66 | 207 | 0.010 |
INRA023 | 194 | 0.010 |
Locus | Fst(se) | Fis(se) | Fit(se) |
---|---|---|---|
ILSTS006 | 0.0955(0.0132) | −0.0022 (0.0312) | 0.0935 (0.0306) |
SPS115 | 0.0896(0.0140) | −0.0019 (0.0336) | 0.0879 (0.0333) |
BM1824 | 0.0837(0.0111) | 0.0041 (0.0346) | 0.0875 (0.0332) |
TGLA122 | 0.0821(0.0107) | −0.0137 (0.0257) | 0.0695 (0.0255) |
ETH3 | 0.0793(0.0108) | −0.0040 (0.0326) | 0.0756 (0.0318) |
ETH225 | 0.0781(0.0099) | −0.0169 (0.0312) | 0.0625 (0.0297) |
BM2113 | 0.0762(0.0099) | −0.0050 (0.0288) | 0.0716 (0.0278) |
TGLA126 | 0.0759 (0.0123) | −0.0086 (0.0374) | 0.0680 (0.0364) |
CSSM66 | 0.0740 (0.0096) | −0.0185 (0.0258) | 0.0568 (0.0252) |
TGLA53 | 0.0715 (0.0079) | 0.0036 (0.0222) | 0.0749 (0.0220) |
INRA023 | 0.0694 (0.0105) | −0.0047 (0.0285) | 0.0651 (0.0282) |
CSRM60 | 0.0659 (0.0094) | −0.0349(0.0289) | 0.0333 (0.0287) |
ETH10 | 0.0615 (0.0109) | −0.0215(0.0320) | 0.0413 (0.0317) |
TGLA227 | 0.0608 (0.0077) | 0.0059(0.0236) | 0.0663 (0.0234) |
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Svishcheva, G.; Babayan, O.; Lkhasaranov, B.; Tsendsuren, A.; Abdurasulov, A.; Stolpovsky, Y. Microsatellite Diversity and Phylogenetic Relationships among East Eurasian Bos taurus Breeds with an Emphasis on Rare and Ancient Local Cattle. Animals 2020, 10, 1493. https://doi.org/10.3390/ani10091493
Svishcheva G, Babayan O, Lkhasaranov B, Tsendsuren A, Abdurasulov A, Stolpovsky Y. Microsatellite Diversity and Phylogenetic Relationships among East Eurasian Bos taurus Breeds with an Emphasis on Rare and Ancient Local Cattle. Animals. 2020; 10(9):1493. https://doi.org/10.3390/ani10091493
Chicago/Turabian StyleSvishcheva, Gulnara, Olga Babayan, Bulat Lkhasaranov, Ariuntuul Tsendsuren, Abdugani Abdurasulov, and Yurii Stolpovsky. 2020. "Microsatellite Diversity and Phylogenetic Relationships among East Eurasian Bos taurus Breeds with an Emphasis on Rare and Ancient Local Cattle" Animals 10, no. 9: 1493. https://doi.org/10.3390/ani10091493