Prevalence, Infectious Characteristics and Genetic Diversity of Staphylococcus aureus and Methicillin-Resistant Staphylococcus aureus (MRSA) in Two Raw-Meat Processing Establishments in Northern Greece
Abstract
:1. Introduction
2. Results
2.1. Isolation of S. aureus
2.2. Antimicrobial Resistance of S. aureus
2.3. Carriage of the mecA, mecC, tst, lukF-PV and Enterotoxin Genes
2.4. Biofilm Formation Ability
2.5. Spa Typing
2.6. Pulsed Field Gel Electrophoresis Typing
2.7. Next-Generation Sequencing
3. Discussion
3.1. Isolation, Antimicrobial Susceptibly and Biofilm Formation Ability of S. aureus and MRSA Isolates
3.2. Enterotoxin Gene Carriage of S. aureus Isolates
3.3. Carriage of Genes Encoding for the Toxic Shock Syndrome and Panton–Valentine Leukocidin Toxins
3.4. Genetic Diversity of S. aureus Isolates
3.5. Next-Generation Sequencing
4. Materials and Methods
4.1. Sample Collection
4.2. Isolation and Identification of Staphylococcus aureus
4.3. Molecular Characterization of Staphylococcus aureus
4.4. Detection of Virulence Genes and Methicillin Resistance Genes
4.5. Antimicrobial Susceptibility Testing
4.6. Assessment of Biofilm-Formation Ability
4.7. Pulsed Field Gel Electrophoresis Analysis
4.8. Spa Typing
4.9. Next-Generation Sequencing and Analysis of the Whole Genome
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Sample Origin | Plant F | Plant Z | Total | ||||||
---|---|---|---|---|---|---|---|---|---|
n * | S. aureus ± (%) | MRSA (%) | n * | S. aureus ± (%) | MRSA (%) | n * | S. aureus ± (%) | MRSA (%) | |
Incoming bovine meat | 6 | 1 (16.7) | - | 6 | - | - | 12 | 1 (8.3) | - |
Incoming porcine meat | 6 | 1 (16.7) | - | 14 | 1 (7.1) | - | 20 | 2 (10.0) | - |
Incoming ovine meat | 4 | - | - | 1 | - | - | 5 | - | - |
Non-ground meat products | 6 | - | - | 2 | - | - | 8 | - | - |
Ground meat products | 8 | 4 (50.0) | - | 8 | 2 (25.0) | 1 (12.5) | 16 | 6 (37.5) | 1 (6.3) |
Nasal cavity of workers | 9 | 3 (33.3) | - | 11 | 2 (18.2) | - | 20 | 5 (25.0) | - |
Infrastructure | 5 | - | - | 17 | 1 (5.9) | - | 22 | 1 (4.5) | - |
Equipment | 16 | 5 (31.3) | - | 41 | 2 (4.9) | - | 57 | 7 (12.3) | - |
Total | 60 | 14 (23.3) | - | 100 | 8 (8.0) | 1 (1.0) | 160 | 22 (13.8) | 1 (0.6) |
Sample Code * | Sample Origin | Antimicrobial Resistance Profile ** | mecA | mecC | lukF-PV/tst | SE Genes | Biofilm Formation Ability | Spa Type | PFGE Electrophoretic Cluster |
---|---|---|---|---|---|---|---|---|---|
F20 | Meat | P, TET, TOB | - | - | -/- | - | moderate | t084 | A |
F22 | Equipment | - | - | - | -/+ | sed, sei | moderate | t012 | NT *** |
F28 | Meat product | P, A/C, TET | - | - | -/- | - | moderate | t499 | A |
F29 | Meat product | P, TET | - | - | -/- | - | moderate | t774 | A |
F32 | Meat product | P | - | - | -/- | seb | moderate | t084 | A |
F36 | Equipment | P, A/C | - | - | -/- | seb | moderate | t084 | A |
F37 | Equipment | P | - | - | -/- | seb | moderate | t084 | A |
F39 | Equipment | P, A/C | - | - | -/- | seb | moderate | t084 | A |
F40 | Equipment | P, AMP, A/C, TOB | - | - | -/- | seb | moderate | t084 | A |
F42 | Meat product | P, A/C | - | - | -/- | seb | moderate | t084 | A |
F43 | Meat product | P, A/C | - | - | -/- | seb | moderate | t084 | A |
F44 | Human nasal cavity | P | - | - | -/- | sed, sei | moderate | t891 | NT |
F45 | Human nasal cavity | P | - | - | -/- | sed | moderate | t197 | A |
F46 | Human nasal cavity | P | - | - | -/- | seb | moderate | t084 | NT |
Ζ5 | Human nasal cavity | P, A/C | - | - | -/+ | seb, sed, sei | moderate | t1510 | NT |
Ζ7 | Human nasal cavity | - | - | - | -/- | - | moderate | new | C |
Ζ18 | Infrastructure | - | - | - | -/- | - | moderate | new | C |
Ζ19 | Equipment | - | - | - | -/- | - | moderate | t091 | B |
Ζ77 | Meat product | - | - | - | -/- | - | moderate | new | C |
Ζ104 | Equipment | - | - | - | -/- | - | strong | t091 | B |
Ζ112 | Meat product | P, AMP, A/C, FOX, TET, TOB, C, SXT | + | - | -/- | - | moderate | t899 | NT *** |
Ζ146 | Meat product | - | - | - | -/- | - | moderate | new | C |
Feature | Isolate Z77 | Isolate Z112 |
---|---|---|
Number of contigs | 85 | 309 |
N50 (bp) | 169,989 | 134,669 |
GC (%), | 33.0 | 33.1 |
Length (bp) | 2,896,939 | 2,840,021 |
Sequence type (ST) | 97 | 398 |
Spa type | Novel type (repeats 07-23-12-12-21-17-13-34-33-34) | t899 |
Resistance genes | - | mecA, blaZ, tetM, fexA, dfrC |
Antibiotic efflux genes | mgrA, arlR, mepR, norC, sdrM, sepA | mgrA, arlR, mepR, norA, norC, sdrM, sepA |
Toxin genes | hlgA, hlgB, hlgC, lukD, lukE | hlgA, hlgB, hlgC |
Exoenzyme genes | aur, splA, splB, splE | aur |
Host immune defense genes | sak, scn | - |
Plasmids | rep20 | rep21, repUS43 |
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Komodromos, D.; Kotzamanidis, C.; Giantzi, V.; Pappa, S.; Papa, A.; Zdragas, A.; Angelidis, A.; Sergelidis, D. Prevalence, Infectious Characteristics and Genetic Diversity of Staphylococcus aureus and Methicillin-Resistant Staphylococcus aureus (MRSA) in Two Raw-Meat Processing Establishments in Northern Greece. Pathogens 2022, 11, 1370. https://doi.org/10.3390/pathogens11111370
Komodromos D, Kotzamanidis C, Giantzi V, Pappa S, Papa A, Zdragas A, Angelidis A, Sergelidis D. Prevalence, Infectious Characteristics and Genetic Diversity of Staphylococcus aureus and Methicillin-Resistant Staphylococcus aureus (MRSA) in Two Raw-Meat Processing Establishments in Northern Greece. Pathogens. 2022; 11(11):1370. https://doi.org/10.3390/pathogens11111370
Chicago/Turabian StyleKomodromos, Dimitrios, Charalampos Kotzamanidis, Virginia Giantzi, Styliani Pappa, Anna Papa, Antonios Zdragas, Apostolos Angelidis, and Daniel Sergelidis. 2022. "Prevalence, Infectious Characteristics and Genetic Diversity of Staphylococcus aureus and Methicillin-Resistant Staphylococcus aureus (MRSA) in Two Raw-Meat Processing Establishments in Northern Greece" Pathogens 11, no. 11: 1370. https://doi.org/10.3390/pathogens11111370