Limited Variation in Codon Usage across Mitochondrial Genomes of Non-Biting Midges (Diptera: Chironomidae)
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Insects
2.2. Mitochondrial Genome Sequencing of Conchapelopia togamaculosa
2.3. Relative Synonymous Codon Usage Analysis of Chironomidae
2.4. Effective Number of Codons Analysis of Chironomidae
3. Results
3.1. Mitochondrial Genome of C. togamaculosa
3.2. Relative Synonymous Codon Usage across Chironomidae
3.3. Effective Number of Codons across Chironomidae
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
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Subfamily | Species | GenBank Accession Number | Reference |
---|---|---|---|
Chironominae | Axarus fungorum | ON099430 | [22] |
Chironominae | Chironomus kiiensis | MZ150770 | [23] |
Chironominae | Dicrotendipes pelochloris | ON838257 | [5] |
Chironominae | Glyptotendipes tokunagai | MZ747091 | [5] |
Chironominae | Microchironomus tabarui | MZ261913 | [24] |
Chironominae | Microtendipes umbrosus | MZ981734 | [13] |
Chironominae | Nilodorum tainanus | ON838256 | [5] |
Chironominae | Polypedilum henicurum | MZ981735 | [25] |
Chironominae | Stenochironomus okialbus | OL753645 | [26] |
Chironominae | Tanytarsus formosanus | ON838255 | [5] |
Diamesinae | Boreoheptagyia brevitarsis | MZ043575 | [7] |
Diamesinae | Diamesa qiangi | MZ127839 | [7] |
Diamesinae | Pagastia tianmumontana | MZ231025 | [7] |
Diamesinae | Potthastia gaedii | OM302504 | [7] |
Diamesinae | Sympotthastia takatensis | MZ231026 | [7] |
Orthocladiinae | Brillia brevicornis | MZ424311 | [6] |
Orthocladiinae | Cricotopus bicinctus | OP006251 | [27] |
Orthocladiinae | Limnophyes minimus | MZ041033 | [28] |
Orthocladiinae | Paratrichocladius tamaater | MW837768 | [6] |
Orthocladiinae | Propsilocerus paradoxus | MW846254 | [6] |
Orthocladiinae | Rheocricotopus villiculus | MW373526 | [8] |
Orthocladiinae | Smittia aterrima | ON838254 | [5] |
Orthocladiinae | Thienemanniella nipponica | MZ424312 | [6] |
Podonominae | Parochlus steinenii | KT003702 | [9] |
Prodiamesinae | Monodiamesa bonalpicola | MW837770 | [6] |
Prodiamesinae | Prodiamesa olivacea | MW373525 | [8] |
Tanypodinae | Clinotanypus yani | MW373524 | [8] |
Tanypodinae | Conchapelopia togamaculosa | PP831866 | This study |
Tanypodinae | Tanypus punctipennis | MZ475054 | [10] |
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Lei, T.; Zheng, X.; Song, C.; Jin, H.; Chen, L.; Qi, X. Limited Variation in Codon Usage across Mitochondrial Genomes of Non-Biting Midges (Diptera: Chironomidae). Insects 2024, 15, 752. https://doi.org/10.3390/insects15100752
Lei T, Zheng X, Song C, Jin H, Chen L, Qi X. Limited Variation in Codon Usage across Mitochondrial Genomes of Non-Biting Midges (Diptera: Chironomidae). Insects. 2024; 15(10):752. https://doi.org/10.3390/insects15100752
Chicago/Turabian StyleLei, Teng, Xiaojun Zheng, Chao Song, Haobo Jin, Lingjun Chen, and Xin Qi. 2024. "Limited Variation in Codon Usage across Mitochondrial Genomes of Non-Biting Midges (Diptera: Chironomidae)" Insects 15, no. 10: 752. https://doi.org/10.3390/insects15100752
APA StyleLei, T., Zheng, X., Song, C., Jin, H., Chen, L., & Qi, X. (2024). Limited Variation in Codon Usage across Mitochondrial Genomes of Non-Biting Midges (Diptera: Chironomidae). Insects, 15(10), 752. https://doi.org/10.3390/insects15100752