A Homozygous Deep Intronic SNX14 Variant Activates Pseudo-Exon Inclusion in a Patient with SCAR20
Abstract
1. Introduction
2. Materials and Methods
2.1. Whole Genome Sequencing (WGS) and Data Analysis
2.2. RNA-Seq and Data Analysis
3. Results
3.1. Clinical Presentation
3.2. Variant Identification by DROP on RNA-Seq Data
3.3. Retrospective WGS Data Analysis
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| ACMG/AMP | American College of Medical Genetics and Genomics/ Association for Molecular Pathology |
| CADD | Combined Annotation Dependent Depletion |
| DROP | Detection of RNA Outliers Pipeline |
| FDR | False discovery rate |
| IGV | Integrative Genomics Viewer |
| Indels | Small insertion/deletion |
| NAA | N-acetyl aspartate |
| NMD | Nonsense-mediated decay |
| RNA-seq | RNA-sequencing |
| SNVs | Single Nucleotide Variants |
| SNX14 | Sorting nexin 14 |
| SCAR20 | Spinocerebellar ataxia, autosomal recessive 20 |
| VUS | Variants of uncertain significance |
| WES | Whole exome sequencing |
| WGS | Whole genome sequencing |
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Misceo, D.; Strømme, P.; Sundaram, A.Y.M.; Bjørnstad, P.M.; Strand, M.E.; Chawla, M.S.; Frengen, E. A Homozygous Deep Intronic SNX14 Variant Activates Pseudo-Exon Inclusion in a Patient with SCAR20. Genes 2026, 17, 378. https://doi.org/10.3390/genes17040378
Misceo D, Strømme P, Sundaram AYM, Bjørnstad PM, Strand ME, Chawla MS, Frengen E. A Homozygous Deep Intronic SNX14 Variant Activates Pseudo-Exon Inclusion in a Patient with SCAR20. Genes. 2026; 17(4):378. https://doi.org/10.3390/genes17040378
Chicago/Turabian StyleMisceo, Doriana, Petter Strømme, Arvind Y. M. Sundaram, Pål Marius Bjørnstad, Mari Elen Strand, Maninder Singh Chawla, and Eirik Frengen. 2026. "A Homozygous Deep Intronic SNX14 Variant Activates Pseudo-Exon Inclusion in a Patient with SCAR20" Genes 17, no. 4: 378. https://doi.org/10.3390/genes17040378
APA StyleMisceo, D., Strømme, P., Sundaram, A. Y. M., Bjørnstad, P. M., Strand, M. E., Chawla, M. S., & Frengen, E. (2026). A Homozygous Deep Intronic SNX14 Variant Activates Pseudo-Exon Inclusion in a Patient with SCAR20. Genes, 17(4), 378. https://doi.org/10.3390/genes17040378

