Genetic Association Study of Brain-Derived Neurotrophic Factor (BDNF) and Serotonin-Related Gene Variants in Suicide Attempters with Major Depressive Disorder and Control Persons
Abstract
1. Introduction
2. Methods
2.1. Study Population
2.2. Research Methods
2.2.1. Epidemiological Questionnaire
2.2.2. Genetic Testing
2.2.3. Data Analysis
3. Results
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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| Rating Scale | Suicide Attempter Group (n = 180) Mean ± S.D. | Comparison Group (n = 159) Mean ± S.D. | t or x2 | p Value |
|---|---|---|---|---|
| Age a | 43.44 ± 18.31 | 10.08 ± 1.23 | 73.08 | <0.01 |
| Sex (N,%) b | ||||
| Female | 111(49.11%) | 801(54.53%) | 2.31 | 0.13 |
| Male | 115(50.88%) | 668(45.47%) |
| SNP ID | Chromosome | Location | Position (Coordinate) | Distance | Alleles | |
|---|---|---|---|---|---|---|
| rs6265 | 11 | UTR | 27636491 | 128/93 | G/A | BDNF |
| rs11030101 | 11 | UTR | 27637319 | 26/31 | A/T | BDNF |
| rs1386493 | 12 | Intron | 70641445 | −11,120 | G/A | TPH2 |
| rs3813034 | 17 | flanking_3UTR | 25548929 | −102 | C/A | SLC6A4 |
| rs6311 | 13 | flanking_5UTR | 46369478 | −1303 | G/A | HTR2A |
| rs6313 | 13 | Coding | 46367940 | 310/101 | C/T | HTR2A |
| rs6314 | 13 | Coding | 46307034 | 62/740 | C/T | HTR2A |
| rs6296 | 6 | Coding | 78228978 | 312/860 | G/C | HTR1B |
| Characteristics | Control | Suicide Attempter | OR | 95% C.I. | p | ||
|---|---|---|---|---|---|---|---|
| N | % | N | % | ||||
| rs1800532TPH1Genotype | |||||||
| AA | 375 | 25.68 | 64 | 28.32 | 1.00 | ||
| AC | 719 | 49.25 | 115 | 50.88 | 0.94 | 0.67–1.30 | 0.34 |
| CC | 366 | 25.07 | 47 | 20.8 | 0.75 | 0.50–1.13 | |
| Allele | |||||||
| A | 1469 | 50.31 | 243 | 53.76 | |||
| C | 1451 | 49.69 | 209 | 46.24 | 0.87 | 0.71–1.06 | 0.17 |
| Dominant | |||||||
| A/A | 375 | 25.68 | 64 | 28.32 | 1.00 | 0.4 | |
| C/A, C/C | 1085 | 74.32 | 162 | 71.68 | 0.87 | 0.64–1.20 | |
| Recessive | |||||||
| A/A, C/A | 1094 | 74.93 | 179 | 79.2 | 1.00 | 0.16 | |
| C/C | 366 | 25.07 | 47 | 20.8 | 0.78 | 0.56–1.11 | |
| Overdominant | |||||||
| A/A, C/C | 741 | 50.75 | 111 | 49.12 | 1.00 | 0.65 | |
| C/A | 719 | 49.25 | 115 | 50.88 | 1.07 | 0.81–1.41 | |
| rs1386493TPH2Genotype | |||||||
| G/G | 1093 | 74.86 | 172 | 76.44 | 1.00 | ||
| G/A | 335 | 22.95 | 48 | 21.33 | 0.91 | 0.65–1.28 | 0.86 |
| A/A | 32 | 2.19 | 5 | 2.22 | 0.99 | 0.38–2.58 | |
| Allele | |||||||
| G | 2521 | 86.34 | 392 | 87.11 | 1.00 | ||
| A | 399 | 13.66 | 58 | 12.89 | 0.93 | 0.70–1.26 | 0.65 |
| Dominant | |||||||
| G/G | 1093 | 74.86 | 172 | 76.44 | 1.00 | ||
| G/A, A/A | 367 | 25.14 | 53 | 23.56 | 0.92 | 0.66–1.28 | 0.61 |
| Recessive | |||||||
| G/G, G/A | 1428 | 97.81 | 220 | 97.78 | 1.00 | ||
| A/A | 32 | 2.19 | 5 | 2.22 | 1.01 | 0.39–2.63 | 0.98 |
| Overdominant | |||||||
| G/G, A/A | 1125 | 77.05 | 177 | 78.67 | 1.00 | ||
| G/A | 335 | 22.95 | 48 | 21.33 | 0.91 | 0.65–1.28 | 0.59 |
| rs3813034SLC6A4Genotype | |||||||
| C/C | 954 | 65.88 | 139 | 61.33 | 1.00 | ||
| C/A | 445 | 30.73 | 72 | 32 | 1.11 | 0.82–1.51 | 0.072 |
| A/A | 49 | 3.38 | 15 | 6.67 | 2.10 | 1.15–3.85 | |
| Allele | |||||||
| C | 2353 | 81.25 | 350 | 77.33 | 1.00 | ||
| A | 543 | 18.75 | 102 | 22.67 | 1.26 | 0.99–1.61 | 0.06 |
| Dominant | |||||||
| C/C | 954 | 65.88 | 139 | 61.33 | 1.00 | 0.2 | |
| A/C, A/A | 494 | 34.12 | 87 | 38.67 | 1.21 | 0.91–1.61 | |
| Recessive | |||||||
| C/C, A/C | 1399 | 96.62 | 211 | 93.33 | 1.00 | 0.028 | |
| A/A | 49 | 3.38 | 15 | 6.67 | 2.03 | 1.12–3.68 | |
| Overdominant | |||||||
| C/C, A/A | 1003 | 69.27 | 154 | 68 | 1.00 | 0.73 | |
| A/C | 445 | 30.73 | 72 | 32 | 1.05 | 0.78–1.42 | |
| rs6311HTR2AGenotype | |||||||
| AA | 392 | 26.8 | 52 | 23 | 1.00 | ||
| AG | 714 | 48.8 | 112 | 49.6 | 1.18 | 0.83–1.68 | 0.39 |
| GG | 356 | 24.4 | 62 | 27.4 | 1.31 | 0.88–1.95 | |
| Allele | |||||||
| G | 1426 | 51.23 | 216 | 47.56 | 1.00 | ||
| A | 1498 | 48.77 | 236 | 52.44 | 1.04 | 0.85–1.27 | 0.70 |
| Dominant | |||||||
| A/A | 392 | 26.81 | 52 | 23.11 | 1.00 | ||
| A/G, G/G | 1070 | 73.19 | 174 | 76.89 | 1.23 | 0.88–1.71 | 0.22 |
| Recessive | |||||||
| A/A, A/G | 1106 | 75.65 | 164 | 72 | 1.00 | ||
| G/G | 356 | 24.35 | 62 | 28 | 1.17 | 0.86–1.61 | 0.32 |
| Overdominant | |||||||
| A/A, G/G | 748 | 51.16 | 114 | 51.11 | 1.00 | ||
| A/G | 714 | 48.84 | 112 | 48.89 | 1.03 | 0.78–1.36 | 0.84 |
| rs631364HTR2AGenotype | |||||||
| T/T | 361 | 24.59 | 53 | 23.56 | 1.00 | ||
| T/C | 712 | 48.5 | 110 | 48 | 1.15 | 0.81–1.63 | 0.42 |
| C/C | 395 | 26.91 | 53 | 28.44 | 1.30 | 0.88–1.93 | |
| Allele | |||||||
| T | 1502 | 51.16 | 216 | 47.56 | |||
| C | 1434 | 48.84 | 236 | 52.44 | 1.14 | 0.94–1.40 | 0.18 |
| Dominant | |||||||
| T/T | 395 | 26.91 | 53 | 23.56 | 1.00 | ||
| C/T, C/C | 1073 | 73.09 | 173 | 76.44 | 1.20 | 0.87–1.67 | 0.27 |
| Recessive | |||||||
| T/T, C/T | 1107 | 75.41 | 163 | 71.56 | 1.00 | ||
| C/C | 361 | 24.59 | 63 | 28.44 | 1.19 | 0.87–1.62 | 0.29 |
| Overdominant | |||||||
| T/T, C/C | 756 | 51.5 | 116 | 52 | 1.00 | ||
| C/T | 712 | 48.5 | 110 | 48 | 1.01 | 0.76–1.33 | 0.96 |
| rs6314HTR2A Genotype | |||||||
| C/C | 1441 | 99.93 | 226 | 100 | 1.00 | ||
| C/T | 2 | 0.07 | 0 | 0 | 0.00 | 0.00–NA | 0.45 |
| Allele | |||||||
| C | 2884 | 99.86 | 452 | 100 | |||
| T | 2 | 0.14 | 0 | 0 | NA | NA | 0.44 |
| Dominant | |||||||
| A/A | 375 | 25.7 | 64 | 28.3 | 1.00 | 0.4 | |
| C/A, C/C | 1085 | 74.3 | 162 | 71.7 | 0.87 | 0.64–1.20 | |
| Recessive | |||||||
| A/A, C/A | 1094 | 74.9 | 179 | 79.2 | 1.00 | 0.16 | |
| C/C | 366 | 25.1 | 47 | 20.8 | 0.78 | 0.56–1.11 | |
| Overdominant | |||||||
| A/A, C/C | 741 | 50.8 | 111 | 49.1 | 1.00 | 0.65 | |
| C/A | 719 | 49.2 | 115 | 50.9 | 1.07 | 0.81–1.41 | |
| rs6296HTR1BGenotype | |||||||
| C/C | 348 | 25.18 | 63 | 28.44 | 1.00 | ||
| C/G | 716 | 51.81 | 111 | 47.56 | 0.86 | 0.6–1.20 | 0.66 |
| G/G | 318 | 23.01 | 52 | 24 | 0.90 | 0.61–1.34 | |
| Allele | |||||||
| C | 1412 | 51.09 | 237 | 52.22 | 1.00 | ||
| G | 1352 | 48.91 | 215 | 47.78 | 1.06 | 0.87–1.29 | 0.59 |
| Dominant | |||||||
| C/C | 348 | 25.18 | 63 | 28.44 | 1.00 | ||
| C/G, G/G | 1034 | 74.82 | 163 | 71.56 | 0.87 | 0.64–1.19 | 0.39 |
| Recessive | |||||||
| C/C, C/G | 1064 | 76.99 | 174 | 76 | 1.00 | ||
| G/G | 318 | 23.01 | 52 | 24 | 1.00 | 0.72–1.40 | 0.99 |
| Overdominant | |||||||
| C/C, G/G | 666 | 48.19 | 115 | 52.44 | 1.00 | ||
| C/G | 716 | 51.81 | 111 | 47.56 | 0.90 | 0.68–1.19 | 0.45 |
| rs6265 BDNF Genotype | |||||||
| G/G | 432 | 29.61 | 65 | 28.44 | 1.00 | ||
| G/A | 709 | 48.59 | 104 | 46.67 | 0.97 | 0.70–1.36 | 0.52 |
| A/A | 318 | 21.8 | 57 | 24.89 | 1.19 | 0.81–1.75 | |
| Allele | |||||||
| G | 1573 | 53.91 | 234 | 51.78 | 1.00 | ||
| A | 1345 | 46.09 | 218 | 48.22 | 1.09 | 0.89–1.33 | 0.40 |
| Dominant | |||||||
| G/G | 432 | 29.61 | 65 | 28.44 | 1.00 | ||
| G/A, A/A | 1027 | 70.39 | 161 | 71.56 | 1.04 | 0.76–1.42 | 0.79 |
| Recessive | |||||||
| G/G, G/A | 1141 | 78.2 | 169 | 75.11 | 1.00 | ||
| A/A | 318 | 21.8 | 57 | 24.89 | 1.21 | 0.87–1.67 | 0.26 |
| Overdominant | |||||||
| G/G, A/A | 750 | 51.41 | 122 | 53.33 | 1.00 | ||
| G/A | 709 | 48.59 | 104 | 46.67 | 0.90 | 0.68–1.19 | 0.47 |
| rs11030101BDNFGenotype | |||||||
| A/A | 691 | 47.3 | 135 | 61.82 | 1.00 | ||
| A/T | 642 | 43.94 | 75 | 33.18 | 0.60 | 0.44–0.81 | 0.0004 |
| T/T | 128 | 8.76 | 11 | 5 | 0.44 | 0.23–0.84 | |
| Allele | |||||||
| A | 2024 | 69.27 | 345 | 78.41 | 1.00 | ||
| T | 898 | 30.73 | 97 | 21.59 | 0.63 | 0.50–0.80 | 0.0002 |
| Dominant | |||||||
| A/A | 691 | 47.3 | 135 | 61.82 | 1.00 | 0.0004 | |
| A/T, T/T | 770 | 52.7 | 86 | 38.18 | 0.57 | 0.43–0.76 | |
| Recessive | |||||||
| A/A, A/T | 1333 | 91.24 | 210 | 95 | 1.00 | 0.043 | |
| T/T | 128 | 8.76 | 11 | 5 | 0.55 | 0.29–1.03 | |
| Overdominant | |||||||
| A/A, T/T | 819 | 56.06 | 146 | 66.82 | 1.00 | 0.0046 | |
| A/T | 642 | 43.94 | 75 | 33.18 | 0.66 | 0.49–0.88 | |
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Kim, T.; Oh, S.B.; Choi, H.J.; Koh, C.Y.; Kim, Y.O.; Kim, M.J.; Woo, S.; Lee, Y.; Lee, C.M.; Kim, J.W.; et al. Genetic Association Study of Brain-Derived Neurotrophic Factor (BDNF) and Serotonin-Related Gene Variants in Suicide Attempters with Major Depressive Disorder and Control Persons. Genes 2025, 16, 1304. https://doi.org/10.3390/genes16111304
Kim T, Oh SB, Choi HJ, Koh CY, Kim YO, Kim MJ, Woo S, Lee Y, Lee CM, Kim JW, et al. Genetic Association Study of Brain-Derived Neurotrophic Factor (BDNF) and Serotonin-Related Gene Variants in Suicide Attempters with Major Depressive Disorder and Control Persons. Genes. 2025; 16(11):1304. https://doi.org/10.3390/genes16111304
Chicago/Turabian StyleKim, Taehun, Seong Beom Oh, Han Joo Choi, Chan Young Koh, Yong Oh Kim, Min Jeong Kim, Sijun Woo, Youngil Lee, Chang Min Lee, Jong Wan Kim, and et al. 2025. "Genetic Association Study of Brain-Derived Neurotrophic Factor (BDNF) and Serotonin-Related Gene Variants in Suicide Attempters with Major Depressive Disorder and Control Persons" Genes 16, no. 11: 1304. https://doi.org/10.3390/genes16111304
APA StyleKim, T., Oh, S. B., Choi, H. J., Koh, C. Y., Kim, Y. O., Kim, M. J., Woo, S., Lee, Y., Lee, C. M., Kim, J. W., Yi, Y.-S., & Lim, M. H. (2025). Genetic Association Study of Brain-Derived Neurotrophic Factor (BDNF) and Serotonin-Related Gene Variants in Suicide Attempters with Major Depressive Disorder and Control Persons. Genes, 16(11), 1304. https://doi.org/10.3390/genes16111304

