1. Introduction
While using fresh human tissue samples is the most accurate research technique for understanding human health and disease, it is well appreciated that complementary study systems can offer greater insight when answering current biological questions. Each methodology has its own strengths and limitations; careful selection and combination provide increased value to scientific studies, where tissue-specific effects can be studied within in vivo samples alongside the detailed investigation of biological mechanisms in more flexible in vitro systems. Complex and physiologically accurate in vitro tissue models have revolutionised human health research [
1], allowing for the routine performance of highly controlled, customised studies using bioengineered tissue equivalents. The reproducible nature of in vitro tissue models allows for continuous and high-throughput experiments due to their ‘on demand’ availability, overcoming sourcing issues that can occasionally be associated with using human samples and providing the additional benefit of stable transport between laboratories. The ability to maintain in vitro tissue models in the long term permits extended or dynamic studies which are not always possible with fresh tissue samples, expanding the range of experiments which can be performed. The myriad technologies now available allow researchers to select the optimal bioengineered tissue system to suit their research techniques and questions, in order to arrive closer to the biological answers they are searching for.
There are three general factors to consider when developing an in vitro tissue model: scaffold/structure, cytokines/growth factors and cell population. Scaffolds are the physical structure on which the tissue model will form, providing mechanical and even chemical cues dependent on the technique used. Growth factors may be incorporated into scaffolds or added to culture media to influence cellular behaviour through direction towards proliferation or differentiation. The cell population used in any in vitro model is key to model success and thus can be the most difficult aspect to optimise, balancing the need for healthy, functional cell populations with a sustainable and consistent supply. Primary cell populations are the most desirable to use, and while some cell populations can be easily isolated from tissues in usable quantities, such as fibroblasts, some demand highly specialist handling during and following isolation. Due to this, repeated cell isolations are required to continue experimental work, such as for respiratory alveolar epithelial cells [
2]. The significant benefits of using primary cell populations to develop tissue models, such as being able to create models of disease, are counterbalanced by the batch-to-batch variation between different donors, at times requiring culture protocols to be reoptimised to support the behaviour of the new batch [
3,
4]. While cancerous or transformed cell lines offer more consistency and a continuous cell supply, they often possess additional genetic mutations which impact cellular function, leading to in vitro models which do not mimic the full functionality of the original tissue and may ultimately provide inaccurate results [
5,
6]. Pluripotent stem cells (PSCs) are an attractive alternative cell source for in vitro models, which, when used effectively, can encompass the benefits of both primary cells and their cancerous counterparts. Although PSCs require differentiation towards a specific cell identity, many differentiation protocols are now well optimised and established, providing the ability to create unlimited, functional cells of any tissue type, including from patient donors.
In the regenerative medicine field, the focus now is on utilising PSC populations to develop complex in vitro models representative of in vivo human tissues. Much progress has been made in specific tissue types; cerebral organoids are well established and utilised widely in the neurobiology field [
7,
8]. Tissues which contain a range of distinct cell types have more complex differentiation requirements, such as skin, and thus need more sustained input to develop the cell populations and resultant tissue models. While the value of PSCs as a resource cannot be overstated, the other elements involved in building an in vitro tissue model must not be overlooked. Many studies have shown that ensuring correct spatial arrangement of cells in three dimensions is critical to maintaining proper reception of physical and chemical cues and ultimately cell function [
9,
10]. A small number of induced PSC (iPSC)-derived skin models have been previously developed, but some lack the natural anatomical structure seen in human skin or use exogenous protein matrices which impact cellular structure and function [
11,
12,
13,
14,
15,
16].
Previously, we have established an in vitro human skin equivalent using primary human cells and a physical porous scaffold, allowing cells to achieve the proper spatial arrangement for normal function, resulting in a skin construct which is highly similar to human skin [
17]. While we have utilised a range of other primary or already-differentiated cell types in this model, such as ageing cells [
18,
19], melanocytes [
20] and sensory neurones [
21], in this study, we have pursued an alternative approach, using iPSC-derived fibroblasts to build the dermal compartment. We show that the iPSC-derived fibroblasts form a consistent dermal model, which is highly similar to the primary human dermal fibroblast model in its structure and extracellular matrix composition. We also show that primary keratinocytes can form a recognisable epidermis when seeded onto the dermal structure, which shows structural similarity with the full primary cell skin equivalent and human native skin samples. This study demonstrates the significant potential of this technology for developing physiologically and anatomically relevant human skin equivalents using components derived from pluripotent cell populations.
2. Materials and Methods
2.1. Derivation of Human iPSC-Derived Fibroblasts
Human iPSC-derived fibroblasts were generated from StemRNA™ Human iPSCs lot number 771-3G (Reprocell Inc, Yokohama, Japan). Differentiation into fibroblasts was carried out by Reprocell Inc, according to a previously published protocol [
13], and the fibroblast phenotype was confirmed by flow cytometry for the following markers: vimentin (ab185030, Abcam, Cambridge, UK), CD10, CD44, CD73 and CD90 (555375, 555479, 555479, 550257, BD Biosciences, Wokingham, UK). Differentiated cells were frozen down in Cellbanker 1 plus (Zenogen Pharma, Fukushima, Japan) until use.
2.2. Routine Maintenance of Cultured Cells
Neonatal human dermal fibroblasts (HDFns, lot #1366434, Thermo Fisher Scientific, Loughborough, UK) were revived and banked in Synthafreeze™ (Thermo Fisher Scientific) according to the manufacturer’s instructions. Cells were maintained in Human Basal Fibroblast Expansion medium (Thermo Fisher Scientific) supplemented with Low Serum Growth Supplement (LSGS, Thermo Fisher Scientific). Cells were passaged enzymatically using Trypsin/EDTA and were used in 3D models between passages 4 and 6.
iPSC-derived fibroblast cultures were provided by Reprocell Inc. Cells were revived and banked in Cell Banker 2 (AMSBio, Abingdon, UK) according to the manufacturer’s instructions. Cells were maintained in 0.1% gelatin (Stem Cell Technologies, Cambridge, UK)-coated 6-well plates (Greiner Bio One, Stonehouse, UK) in Dulbecco’s modified Eagle’s Medium with High Glucose and GlutaMax™ (Thermo Fisher Scientific) supplemented with Foetal Bovine Serum (FBS, Thermo Fisher Scientific), 1% Non-Essential Amino Acids (NEAAs, Thermo Fisher Scientific) and 10 ng/mL basic fibroblast growth factor (bFGF, Peprotech, Thermo Fisher Scientific). Cells were passaged using Accutase (Stem Cell Technologies) and used in 3D models up to a population doubling level of 12.
Neonatal human epidermal keratinocytes (HEKn, lot numbers #2286578 and #2286109) were revived and banked in Synthefreeze™ according to the manufacturer’s instructions. Cells were maintained in Epilife (Thermo Fisher Scientific) supplemented with Human Keratinocyte Growth Supplement (HKGS, Thermo Fisher Scientific). Cells were used in full-thickness models at passage 3.
2.3. Formation of 3D Skin Models
The methodology for generating bioengineered human skin was adapted from Roger et al., 2019 [
17], with significant adjustments made to the formation of the dermis by iPSC-derived fibroblasts. The procedure to generate these full-thickness skin models was performed over two steps, which are described as follows:
- 1)
Insert preparation and dermal model generation.
On the day of dermal model seeding, Alvetex® 12-well scaffolds (Reprocell Europe Ltd., Sedgefield, UK) were prepared for use according to the manufacturer’s protocol as follows: Inserts were initially placed into 6-well plates and soaked in 70% ethanol to render them hydrophilic, before washing in Phosphate-Buffered Saline (PBS) and adding a small amount of dermal media to the insert to prevent it from drying out. Following this, fibroblast populations, which had been cultured to 70–80% confluency, were prepared for seeding to form dermal models.
Primary HDFn cultures were washed with PBS and detached from cultureware using Trypsin/EDTA, with the reaction being neutralised using Trypsin Neutraliser solution (Thermo Fisher Scientific). HDFns were then counted using the Trypan Blue exclusion assay to determine cell viability. The medium was removed from the prepared inserts, and 0.5 M viable cells were seeded on top of each 12-well insert in approximately 200 µL medium in a dropwise manner, ensuring even coverage across the surface. Inserts were then incubated at 37 °C for at least 2 h to allow cells to attach to the scaffold, before topping up each well with 10 mL of dermal model media consisting of Human Basal Fibroblast Expansion medium, LSGS, 1% Penicillin/Streptomycin, 100 µg/mL ascorbic acid and 5 ng/mL Transforming Growth Factor-β (TGF-β).
iPSC-derived fibroblasts were washed with PBS before being detached from cultureware using Accutase, with maintenance media, as described above, added to neutralise the reaction. iPSC-derived fibroblasts were then counted using the Trypan Blue exclusion assay to determine cell viability, and seeded onto the inserts as described above, with 0.5 M per 12-well insert in a dropwise manner, using the dermal model media. In selected experiments where the DMEM formulation was used for iPSC-derived fibroblast dermal models, media consisted of the following: DMEM, 10% FBS, 1% NEAA, 1% Penicillin/Streptomycin, 100 µg/mL ascorbic acid and 5 ng/mL TGF-β.
Dermal models were subsequently cultured at 37 °C and 5% CO2 for up to 28 days, with full media changes every 3–4 days.
- 2)
Full-thickness model formation.
To form full-thickness skin equivalents, 28-day-old dermal models were used. Primary HEKns, which had been grown to 70–80% confluency, were detached from cultureware using Trypsin/EDTA and the reaction neutralised using Trypsin Neutraliser solution. HEKns were counted using the Trypan Blue exclusion assay to determine cell viability. Just before HEKn seeding, dermal models were moved to fresh 6-well plates, with any media remaining on the model carefully aspirated, avoiding touching the dermal model. Then, 1.3 M viable HEKns were seeded onto each dermal model at approximately 200 µL in a dropwise manner, to ensure even coverage across the surface. Models were then incubated at 37 °C for at least 2 h to allow cells to attach to the scaffold, before topping up each well with 10 mL of submerged culture media consisting of the following: Epilife, HKGS, 1% Penicillin/Streptomycin, 10 ng/mL keratinocyte growth factor, 100 µg/mL ascorbic acid and 140 µM calcium chloride. Models were then cultured at 37 °C and 5% CO2 for 48 h without interference.
Following this, models were moved to the air–liquid interface using the Alvetex® Well Insert holder and Deep Petri Dish (Reprocell Europe Ltd.). The medium was aspirated from full-thickness model inserts, carefully ensuring that all liquid was removed from the top of the models without disturbing the keratinocyte layer. Models were then placed into the Well Insert holder on the middle setting, with 3 models in each Deep Petri Dish. A total of 35 mL of air–liquid interface media was carefully added to the Deep Petri Dish area below the models, which is sufficient to touch the base of each model, creating the air–liquid interface condition. Air–liquid interface media consisted of Epilife, HKGS, 1% Penicillin/Streptomycin, 10 ng/mL keratinocyte growth factor, 100 µg/mL ascorbic acid and 1.64 mM calcium chloride. Full-thickness models were then cultured at 37 °C and 5% CO2 for a further 14 days, with full media changes every 3–4 days.
2.4. Tissue Model Processing
Upon harvesting, models were washed twice in PBS before fixing in 4% paraformaldehyde (Thermo Fisher Scientific) for 2 h at room temperature. Models were dehydrated through a series of ethanols up to 100%, before being incubated in Histoclear II (National Diagnostics, Atlanta, GA, USA) for 30 min. Samples were then incubated in a 1:1 ratio of Histoclear II/molten wax (Cell Path, Powys, UK) at 60 °C for at least 30 min, or until the mixture had completely melted. Samples were then incubated in pure molten wax for 60 min at 60 °C, before embedding in wax in plastic moulds. Samples were sectioned at 5 µm on a Leica RM2125 RT rotary microtome and mounted onto SuperFrost charged microscope slides (Thermo Fisher Scientific).
2.5. Histology
Haematoxylin and Eosin staining was performed as subsequently described. Slides were deparaffinised in Histoclear I (National Diagnostics, Scientific Laboratory Supplies, Nottingham, UK) for 20 min, before rehydrating in 100%, 95% and 70% ethanols and distilled water. Slides were stained in Mayer’s haematoxylin solution (Merck, Dorset, UK) for 5 min, before washing for 30 s in distilled water. Slides were dehydrated in 70% ethanol for 30 s, before being incubated in alkaline ethanol for 30 s to develop the characteristic blue of the nuclei. Slides were washed in 70% ethanol and further dehydrated in 95% ethanol for 30 s each, before staining in Eosin Y (Merck) in 95% ethanol for 30 s. Slides were then washed twice in 95% ethanol for 10 s each, before dehydration in 100% ethanol for 15 s and 30 s. Slides were cleared in Histoclear I for 5 min, before clearing again in fresh Histoclear I. Slides were mounted onto glass coverslips in Histomount or Omnimount (National Diagnostics).
2.6. Immunofluorescence
Slides were deparaffinised in Histoclear I for 20 min, before rehydration in 100% and 70% ethanols and washing in PBS. Antigen retrieval was performed by incubating slides in pH 6 citrate buffer at 95 °C for 20 min and allowing slides to cool to room temperature. Blocking was performed at room temperature for 60 min, using 20% normal calf serum (Thermo Fisher Scientific) in 0.4% Triton-X-100 in PBS. Primary antibodies were added to the slides (see
Table 1) and incubated either at room temperature for 60 min or at 4 °C overnight. Following this, slides were washed 3 times in PBS for 10 min each, before appropriate secondary antibodies and Hoescht 33342 (Thermo Fisher Scientific) were added, and incubated for 60 min at room temperature. Slides were washed another 3 times in PBS for 10 min each, before mounting on glass coverslips with Vectashield
® Antifade Mounting Medium (Vector Labs, Newark, NJ, USA). Slides were stored at 4 °C away from light until imaging was performed using a Zeiss 800 confocal microscope with Airyscan or the Zeiss Axioskop 40 fluorescent microscope (Carl Zeiss Microscopy Ltd., Cambridge, UK).
2.7. Collagen Assay
A total collagen hydroxyproline assay (QuickZyme Biosciences, Leiden, The Netherlands) was performed according to the manufacturer’s instructions; 3 mm punch biopsy samples were taken from individual 3D models and processed using the protocol provided in the kit.
2.8. Fibronectin Assay
A fibronectin ELISA (R&D Systems, Abingdon, UK) was performed according to the manufacturer’s instructions; 3 mm punch biopsy samples were taken from individual 3D models and processed according to the protocol provided in the kit.
2.9. Human Skin Samples
Healthy human skin samples were obtained from surgical residual sources with full ethical consent from the patient according to Reprocell tissue protocol TPS-011-UK, under REC reference number 22/WS/0007. Human skin samples were fixed in 10% neutral buffered formalin and dehydrated through a series of ethanols, 70%, 80%, 90%, 95% and 100%, before being embedded in wax as described above.
4. Discussion
The use of fresh tissue samples or primary cells is considered the most desirable and accurate way to conduct human biological research; however, a combination of factors can restrict feasibility. These include the limited viability window during which experiments can be performed, the requirement for specialist equipment and careful monitoring, a complex legal and ethical framework surrounding the use of human samples and the simple fact that demand often outstrips supply. The use of complementary systems enhances scientific studies, with each bringing its own strengths in answering biological questions. In vitro tissue models can offer many of the benefits of human tissue, particularly when using primary cells and ensuring that the cellular microenvironment contains the correct spatial, physical and chemical cues to develop and maintain a complex tissue construct. However, the limited nature of primary cells creates the need to use multiple donor batches, resulting in biological variation which can impact model performance. Additionally, the inability to successfully isolate and maintain some cell populations prohibits their study. While transformed cells offer a potential option for consistent cell supplies, their inherent differences often prevent them from truly recapitulating their primary counterparts.
In this study, we have used iPSC-derived dermal fibroblasts to create full-thickness human skin equivalents which were compared to skin models created using primary dermal fibroblasts. We examined the growth and synthesis of the extracellular matrix within iPSC-derived dermal models compared to the primary cell controls, before using primary human keratinocytes to build a full-thickness skin equivalent. In-depth characterisation was then performed to assess the structure of the full-thickness models created using a dermal compartment derived either from iPSC-derived fibroblasts or from primary fibroblasts in comparison to native human skin tissue.
The initial characterisation of the iDFs aimed to ensure that fibroblast identity had been maintained on transfer to a different laboratory and to explore their phenotype when cultured in the same defined culture media used for the primary fibroblasts. The absence of immunostaining for the pluripotency regulator Oct4 contributed to confirming the differentiated state and absence of the stem cell phenotype. Positive immunostaining for fibroblast-associated markers—cytoskeletal protein vimentin [
14], junctional protein N cadherin [
22] and membrane glycoprotein CD90 [
23]—helped confirm fibroblast identity. Flow cytometry data further confirmed the expected expression patterns for Oct4 and vimentin data for the fibroblast phenotype. The relatively low level of alpha smooth muscle actin expression was consistent with the fact that the fibroblasts remained in an unstimulated state. Growth curves compared alternative media compositions to ensure that iDFs were capable of proliferating in the M106 medium and that the phenotype was maintained. The small increase in population doubling time likely reflects the difference the in nutritional composition of the M106 defined medium, a phenomenon also noted in the primary cells used in these experiments [
24,
25]. Population growth was reduced and plateaued around day 6 when iDFs were cultured in the defined media, as opposed to the continued increase observed in the recommended DMEM formulation. It should be noted that the DMEM formulation contains basic fibroblast growth factor (also known as FGF-2), a potent stimulator of fibroblast growth [
26], which enhances proliferation. Flow cytometry demonstrated no significant difference in the expression of selected markers when iDFs were cultured in the two media types.
Initial experiments compared the ability of iPSC-derived fibroblasts and primary dermal fibroblasts to integrate with the scaffold, again using the alternative media types. Previous work has shown that a range of fibroblast types can enter and populate the porous scaffold successfully [
18,
19,
27]. The data herein demonstrate that the same successful outcome was replicated using iDFs, indicating the possibility of creating a full-thickness skin model using these cells in this established system.
Subsequent experiments focused on a week-by-week comparison of dermal models formed using iDFs and primary human dermal fibroblasts, investigating cell number and extracellular matrix deposition, when cultured in the M106 medium. The histology data confirmed the sustained increase in iDFs inside and on the surface of the scaffold membrane over time. It was also noted that there are generally fewer iDFs in the models compared to constructs containing primary fibroblasts. Quantitative analysis confirmed that the number of cells in the iDF models was consistently around half of that observed in time-matched primary cell dermal models. This is unexpected given the fact that the same number of cells were seeded on the porous scaffold at the beginning of dermal culture. The reduced iDF population within the scaffold did not impact extracellular matrix (ECM) synthesis. Quantitative analysis showed no significant difference in the deposition of key ECM proteins collagen 1 and fibronectin between the two populations. iPSC-derived fibroblast populations have previously been shown to synthesise the ECM, but this was often either in conventional 2D cell culture or in combination with exogenous protein matrices, which could influence results [
11,
14]. A recent study has also noted the enhanced ability of iPSC-derived fibroblasts to generate ECM proteins in an alternative defined medium, a beneficial property for generating in vitro skin models without using animal products [
11]. The unique nature of the system reported herein permits close monitoring of endogenous ECM synthesis in response to changing culture conditions coupled with a consistent anatomical 3D structure and direct comparison to primary cell controls. Sufficient evidence was collected in these dermal model studies to undertake pilot studies assessing the ability of the iDF dermal models to maintain an epidermis.
Primary human keratinocytes were seeded onto both the iDF and primary cell control models to produce a full-thickness skin model. This parallels other studies which also used this stepwise approach to examine the capabilities of the dermal model [
13]. However, the final step of introducing iPSC-derived keratinocytes in addition to iPSC-derived fibroblasts to form full-thickness skin models appeared to cause issues in other studies. What was common to these was the variability in the formation of the epidermis in the full-thickness skin equivalent. Many such full-thickness skin models reportedly showed poor structure and organisation, and at times were unrecognisable as a stratified, differentiated epidermis [
11,
13,
14,
16]. A study which also incorporated iPSC-derived melanocytes into an iPSC-derived full-thickness skin model does show a more recognisable phenotype [
12], with an observable stratum corneum, yet the structural organisation of the epidermis is still variable. While the use of iDFs resulted in a partly thinner epidermis, the iDF dermal model reported herein was able to support the formation of a recognisable and organised epidermis comparable in overall structure to models created using primary dermal fibroblasts and native tissue architecture. The epidermal tissue has a polarised basal layer of cells, as evidenced by distinct staining for cytokeratins 10 and 14, and a differentiated stratum corneum on the surface, consistent with the structure of the primary cell control and the human skin samples. Further characterisation using a range of skin markers confirmed their correct spatial localisation, including key barrier and junctional proteins. These data indicate that epidermal stratification and differentiation processes had successfully occurred in skin equivalents built on iPSC-derived cells.
Whilst we have successfully demonstrated the ability of human iPSC-derived fibroblasts to produce a dermal equivalent comprising an endogenously produced ECM, it is also important to recognise the limitations and scope for improvement. For example, our data indicate the formation of human ECM components, but they are not in any way exhaustive. Additional work is required to assess the ECM composition in a more in-depth manner, making comparisons to the control and native human skin with more extensive analytical capability such as by applying proteomic approaches. Similarly, analysis of the secretome of the dermal compartment would also demonstrate comparability to the native dermis. Indeed, we have previously shown that such signalling is an important aspect in the development of HSEs (18). The HSE developed in this study is composed of only two cell types, one of which is a primary cell population. Logical next steps to address this would include using iPSC-derived keratinocytes to form the full-thickness HSE, to determine whether the improved epidermal organisation can be maintained within a model produced exclusively from iPSC-derived cells. This would also further elucidate the role of the stem cell-derived dermis in the formation and support of the epidermis. The relatively simple nature of our stem cell-derived HSE model lends itself well to the generation and addition of other integral skin cell populations, such as melanocytes or immune cells. For example, we have successfully created human skin equivalents using primary pigmented and immune cells based on similar platform technology [
20,
28]. The incorporation of skin appendages, such as hair follicles or sebaceous glands, is much more sophisticated to reproduce but is an ultimate goal as technology advances. Collectively, such research tools would expand the potential uses of HSEs as well as provide more accurate insights into biological questions. The applications of HSE technology are wide ranging, from fundamental skin biology work to generating patient-derived HSEs to study inherited skin conditions or the cutaneous component of genetic diseases. Personalised medicine studies would also be possible following further development of stem cell-derived HSEs, allowing for the selection of efficient therapeutics; this may be especially useful for major clinical issues such as chronic skin ulceration, whereby patients can be screened for a range of potential therapies and any underlying wound features explored. Whilst there are many exciting possibilities for such technology, it is essential that the methodology to construct such models is developed in incremental steps, which are checked and validated. Indeed, the current study exemplifies a step in this direction, adopting this approach.
In summary, these data provide compelling evidence that iPSC-derived fibroblasts are capable of producing an endogenous extracellular matrix within a scaffold membrane designed to support the bioengineering of a human skin construct. The dermal equivalent generated contained ECM proteins characteristic of native skin tissue that are suitable to support the growth and differentiation of the epidermis. This study paves the way for future work developing a human full-thickness skin equivalent produced entirely from iPSC-derived cell populations using this approach. This approach would also be valuable to support other epithelial tissue models that would benefit from such stromal interactions.