1. Introduction
Backbone flexibility represents an important parameter in the characterization of a polymer. It affects its glass transition, which defines whether a plastic will be used as a hard (brittle) plastic or a rubbery elastomer at temperatures below or above its glass transition temperature (
Tg), respectively [
1]. More specifically, a stiffer backbone like that of polystyrene yields a higher glass transition temperature (
Tg) of +100 °C [
2] compared to that of a polymer with a more flexible backbone like poly(ethylene oxide) with a
Tg of −53 °C [
3,
4]. Furthermore, more flexible polymeric backbones enable more contacts and interactions between the structural units (SU) constituting the polymer. This matters for polypeptides like proteins where the flexibility of the polypeptidic backbone promotes interactions between amino acids, which lead to the formation of specific secondary structures, eventually leading to the folded protein. For instance, more flexible polypeptides containing glycine [
5] and alanine [
6] generate more contacts between amino acids, which results in longer protein folding times [
7]. Another property affected by polymer backbone flexibility is the stiffness of the resulting polymeric material defined by its modulus. Direct relationships between the modulus of a polymeric material and the persistence length (
lp)—a physical measure of polymer backbone flexibility—have been proposed theoretically [
8,
9,
10] and observed experimentally for semi-rigid linear chains like polymeric bottlebrushes [
11] and DNA [
12]. Backbone flexibility can also be taken advantage of to control the expansion of a polymer coil upon increasing the solution temperature or adjusting its contour length as it interacts with the surface of wax crystals, which is being done with the poly(alkyl methacrylate)s (PC
nMA) used, as viscosity index improvers (VII) or pour point depressants (PPD), respectively, by the oil additive industry [
13]. These examples illustrate the importance of polymer backbone flexibility and how it impacts polymer properties for diverse applications.
Polymer backbone flexibility can be described by the persistence length (
lp), which represents the distance between a reference point and a secondary point taken along the contour length (
Lc) of the polymer chain, where the vector tangent to the chain at the secondary point has lost its orientation with respect to the original orientation of the vector tangent to
Lc at the reference point. Traditionally,
lp has been determined through the analysis of conformational plots generated by measuring the intrinsic viscosity ([
η]) by viscometry [
14] or the radius of gyration (
RG) by scattering techniques [
15,
16] for a series of polymer samples prepared with a narrow molecular weight distribution (MWD) and dissolved in a θ-solvent. Unfortunately, many polymers cannot be prepared with a narrow MWD. For these polydisperse polymer samples, a gel permeation chromatography (GPC) instrument equipped with a light scattering or viscosity detector can be used to obtain [
η] or
RG as a function of molecular weight, which can then be used to build the corresponding conformational plots [
17,
18]. Unfortunately, GPC instruments require careful calibration and are typically operated with the same solvent in which the polymers of interest might not be soluble, and the polymers might not interact with the packing material of the GPC columns, so that the GPC trace truly reflects the MWD of the polymer sample.
The difficulties encountered in accommodating all these experimental requirements rationalize why
lp remains unknown for many polymer backbones and justify the search and development of methodologies based on techniques other than viscometry, scattering, and GPC to determine
lp. One such methodology is based on pyrene excimer formation (PEF) between excited and ground-state pyrenyl labels, which are randomly and covalently attached onto a polymer [
19,
20]. Pyrene was selected over other excimer-forming fluorophores like naphthalene or perylene for the following reasons. The four aromatic rings of pyrene enable much more efficient excimer formation than naphthalene with only two aromatic rings [
21], and the fluorescence of the pyrene monomer and excimer are well-resolved, allowing their separate detection in the fluorescence spectrum, which is not the case for perylene with its five aromatic rings [
22].
The methodology based on PEF takes advantage of the fact that since a pyrenyl label attached to a polymer chain remains excited for a finite and short period of time (<1 μs), it can only probe a volume referred to as a
blob, which is much smaller than the polymer coil. Since each pyrenyl label probes the same
blob, the polymer coil can be divided into a cluster of identical
blobs, among which the randomly attached pyrenyl labels distribute themselves according to a Poisson distribution. The fluorescence
blob model (FBM) can then be applied to fit the fluorescence decays acquired with the pyrene-labeled polymer and to determine the number (
Nblob) of SU that are encompassed inside a
blob. Multiplying
Nblob by the length (
b) of a SU yields the contour length (
Lc) of the polymer segment inside a
blob whose squared end-to-end distance (<
rEE2>
blob) represents the square of the
blob diameter (see
Figure 1). Conducting these PEF experiments with a series of poly(oligo(ethylene glycol) methyl ether methacrylate)s labeled with 1-pyrenebutanol (PyC
4-PEG
nMA) [
19],
Nblob was found to decrease with an increasing side chain length (
n), reflecting the extension of the main chain. A plateau was reached for
n equal to 16 and 19, corresponding to a fully extended polymethacrylate backbone over a length scale defined by a
blob. Since a
blob remains the same for a given polymer family, <
rEE2>
blob could be determined by taking
Nblob in the plateau region as
Nblob∞, corresponding to the
Nblob value of a fully extended polymethacrylate backbone yielding <
rEE2>
blob = (
Nblob∞ ×
b)
2. Unfortunately, <
rEE2>
blob was also found to decrease with increasing solvent viscosity as a consequence of PEF being diffusion-controlled, with a higher solvent viscosity reducing the reach of a pyrenyl label and <
rEE2>
blob. Fortunately, this detrimental effect could be eliminated by selecting organic solvents with a viscosity of 0.74 (±0.08) mPa.s at 25 °C, for which
Nblob∞ would equal 12 [
19].
Because the
blobs are much smaller than the polymer coil,
Nblob takes values that are usually smaller than 100, which are small enough to ensure that
Nblob is not affected by the solvent quality toward the polymer. Such conditions enable the application of the Kratky–Porod equation given in Equation (1) after being modified to reflect the confinement of a polymer segment inside a
blob (see
Figure 1) [
23]. With
Nblob known experimentally from the PEF measurements and
Nblob∞ and
b being equal to, respectively, 12 [
19] and 0.25 nm [
24,
25] for a methacrylate monomer, Equation (1) could be solved to retrieve
lp for the PyC
4-PEG
nMA samples in
N,
N-dimethylformamide (DMF) with a suitable 0.79 mPa.s solvent viscosity.
lp was found to increase linearly from 0.43 nm for PEG
0MA (i.e., poly(methyl methacrylate)) to 1.8 nm for PEG
5MA with the square of the number of non-hydrogen atoms in the side chain (
NS2) of a PEG
nMA sample as predicted theoretically [
26].
While the
lp values retrieved for the PEG
nMA samples in DMF by applying this PEF-based methodology were encouraging, they were the first
lp values reported for PEG
nMA samples and could not be compared to already published
lp values. To validate the PEF-based methodology, the present study describes its application to a series of poly(alkyl methacrylate)s randomly labeled with 1-pyrenebutanol (PyC
4-PC
nMA with
n = 1, 4, 6, 8, 12, and 18) to determine
lp for the PC
nMA samples and compare them with already published
lp values obtained by viscometry [
14]. The PEF experiments were conducted in
o-xylene, which could solubilize all the PyC
4-PC
nMA samples and had a suitable viscosity of 0.76 mPa.s to ensure that
Nblob∞ equaled 12 [
19]. The
lp values determined by PEF and viscometry [
14] for the PC
nMA samples were in good agreement, supporting the notion that the PEF-based methodology can be employed for
lp determination. The
lp values obtained with the PyC
4-PC
nMA samples in o-xylene were also compared to the
lp values obtained for the PyC
4-PEG
nMA samples in
o-xylene and DMF [
19] as well as those obtained for a series of PEG
nMA in DMF where the pyrenyl labels were connected to the polymethacrylate backbone via a penta(ethylene glycol) linker (PyEG
5-PEG
nMA) [
20]. The good agreement observed between the
lp values obtained for these different polymethacrylate samples with different side chain compositions in DMF for the PyC
4-PEG
nMA and PyEG
5-PEG
nMA samples, in
o-xylene for the PyC
4-PEG
nMA and PyC
4-PC
nMA samples, and polymethacrylate backbones labeled with different pyrene derivatives indicates that the PEF-based methodology for determining
lp is robust.
While the pyrene-labeling requirement for PEF experiments conducted on macromolecules is a disadvantage compared to techniques like viscometry [
14], scattering [
15,
16], or GPC [
17,
18] that can characterize a macromolecule without chemical post-modification, the extreme sensitivity of fluorescence enables the study of pyrene-labeled macromolecules in the 0.1–50 mg/L range, 3 to 4 orders of magnitude lower than what is currently achievable by the more conventional techniques. Consequently, this study demonstrates that the PEF-based methodology is a robust technique for probing the conformation of macromolecules, and because it can operate with extremely dilute solutions, it can effectively complement the more traditional characterization techniques under conditions requiring improved sensitivity, such as those encountered for macromolecules located at interfaces.
2. Materials and Methods
Chemicals: The synthesis and characterization of the poly(alkyl methacrylate)s labeled with 1-pyrenebutanol (PyC
4-PC
nMA with
n = 1, 4, 6, 8, 12, and 18) and the poly(oligo(ethylene glycol) methyl ether methacrylate) labeled with either 1-pyrenebutanol (PyC
4-PEG
nMA with
n = 0–5, 9, 16, and 19) or 1-pyrenemethoxypenta(ethylene glycol) (PyEG
5-PEG
nMA with
n = 0, 3–5, 7, 9, and 19) were presented in the references [
19,
20,
27], respectively. Their chemical structure is shown in
Table 1.
o-Xylene was purchased from Sigma-Aldrich (St. Louis, MO, USA).
UV-Vis Absorption: Absorption spectra of solutions of the PyC4-PCnMA and PyC4-PEGnMA samples in o-xylene were acquired with a Cary 100 UV-Visible spectrophotometer to ensure that the absorbance at 344 nm was equal to 0.1, corresponding to a concentration of pyrenyl labels of 2.5 × 10−6 M and a less than 50 mg/L concentration of pyrene-labeled polymer. Such low polymer concentrations ensure that no intermolecular PEF takes place.
Steady-State Fluorescence: All PyC4-PCnMA and PyC4-PEGnMA solutions in o-xylene were degassed with a gentle flow of nitrogen for 50 min before acquiring the fluorescence spectra and decays. A HORIBA QM-400 spectrofluorometer fitted with a xenon arc lamp was employed to acquire the fluorescence spectra of the PyC4-PCnMA and PyC4-PEGnMA solutions from 350 to 600 nm. The solutions were excited at 344 nm. Analysis of the fluorescence spectra yielded the IE/IM ratio obtained by integrating the fluorescence spectra from 376 to 382 nm and from 500 to 530 nm to determine the monomer (IM) and excimer (IE) fluorescence intensity, respectively, before dividing IE by IM.
Time-Resolved Fluorescence: The degassed solutions of PyC4-PCnMA and PyC4-PEGnMA in o-xylene were excited at 344 nm with a 340 nm NanoLED fitted to the excitation monochromator set at 344 nm of an IBH Ltd. time-resolved fluorometer with a 500 kHz repetition rate and a 2.04 ns time-per-channel to obtain their fluorescence decays at 379 and 510 nm for the pyrene monomer and excimer, respectively. The monomer and excimer fluorescence decays were acquired with cut-off filters at 370 and 495 nm placed before the emission monochromator to minimize stray light from reaching the detector and with 40,000 and 20,000 counts at the decay maximum, respectively. The beam from the NanoLED was reflected off a triangular aluminum monolith and passed through the emission monochromator set at 344 nm to obtain the instrument response function (IRF).
Fluorescence Decay Analysis: The fluorescence
blob model (FBM) was applied to fit globally the fluorescence decays of the pyrene monomer and excimer of the PyC
4-PC
nMA and PyC
4-PEG
nMA solutions in
o-xylene [
19,
20]. The FBM acknowledges that, while it remains excited, a pyrenyl label only probes a finite subvolume of the polymer coil, referred to as a
blob, which is used to compartmentalize the polymer coil into a cluster of identical
blobs where the pyrenyl moieties distribute themselves randomly according to a Poisson distribution. The main parameters retrieved from the FBM analysis of the decays are the rate constant (
kblob) for diffusive encounters taking place inside a
blob between two structural units (SU) bearing an excited (
Pydiff*) and a ground-state pyrenyl labels, the average number <
n> of ground-state pyrenyl groups inside a
blob, and the product
ke × [
blob] of the rate constant (
ke) representing the exchange of pyrene groups between
blobs and the
blob concentration ([
blob]) inside the polymer coil. Upon encounter between two SU bearing excited and ground-state pyrenes, the excited pyrene
Pydiff* turns into the species
Pyk2*, which reacts rapidly with the ground-state pyrene with the large rate constant
k2 (~10 ×
kblob) to form one of the two excimers
E0* or
D*.
E0* and
D* represent pyrenyl labels that form an excimer with a well- or poorly stacked ground-state pyrene, resulting in a short or long excimer lifetime
τE0 or
τD, respectively. The fifth pyrene species accounts for the pyrenyl pendants that are isolated along the polymer, which cannot form excimer and emit as if they were free in solution (
Pyfree*). The molar fractions
fdiff,
fk2, and
ffree represent the contributions from the species
Pydiff*,
Pyk2*, and
Pyfree*, respectively, while the combined contribution of the pre-aggregated pyrene species
E0* and
D* are represented by the molar fraction
fagg.
The mathematical expressions used to fit the fluorescence decays of the pyrene monomer and excimer are presented as
Equations (S1) and (S2) in Supplementary Materials, respectively, after they had been convoluted with the IRF. The parameters used in
Equations (S1) and (S2) were optimized according to the Marquardt-Levenberg algorithm [
28] and these parameters retrieved from the global FBM analysis of the fluorescence decays are listed in
Tables S1–S4. These FBM analyses were first conducted with the program
globmis90gbg using a floating
k2. The
k2 values obtained by globally fitting the pyrene monomer and excimer fluorescence decays of all the PyC
4-PC
nMA or PyC
4-PEG
nMA samples for an
n-value of a given polymer series were averaged. The analysis of these fluorescence decays was then repeated with the program
globmis90bbg where
k2 was fixed to its average value. This procedure has been shown to retrieve the other parameters with much greater accuracy [
29]. A listing of the programs
globmis90gbg and
globmis90bbg written in Fortran is provided as
Supplementary Materials.
The size of a
blob could be determined from the number (
Nblob) of SU constituting a
blob according to Equation (2). Equation (2) combines the molar fraction of SU bearing a pyrenyl label in the PyC
4-PC
nMA and PyC
4-PEG
nMA samples, which had been determined earlier [
19,
27], the molar fraction (
fMfree) of
Pyfree* species detected in the pyrene monomer fluorescence decays, and the average number (<
n>) of pyrenyl labels per
blob.
4. Discussion
The recent demonstration that PEF can probe the local density, and thus the conformation of macromolecules in solution [
31], was taken advantage of in the present study to characterize the persistence length of a series of PyC
4-PC
nMA samples. The good agreement observed between the persistence lengths determined with different techniques and polymeric constructs in
Figure 6 suggests that the methodology is robust. Since the present study confirms that PEF provides quantitative information about macromolecular conformations, the strengths and limitations of the PEF-based methodology are now discussed in comparison with the more traditional techniques already available.
Certainly, the main disadvantage of the PEF-based methodology described herein is the requirement that the macromolecule of interest is randomly labeled with pyrene, which imposes an additional synthetic step compared to techniques such as viscometry [
14] or scattering [
15,
16], which use the macromolecule “as prepared”. Fortunately, the labeling must be random, which is much easier to accomplish compared to the specific end-labeling, which is typically required for quantitative studies of linear chains [
32,
33,
34,
35,
36]. Random pyrene labeling can be achieved via grafting through
, as is performed in the present and earlier studies [
19,
20,
27,
37] or grafting to as with polypeptides [
38,
39] or polysaccharides [
40,
41]. While random pyrene labeling can be fairly easily implemented, this extra synthetic step would not be needed with scattering or viscometry experiments.
Another limitation in the PEF-based methodology is the range of
lp values that can be retrieved. Since
lp is derived by using
Nblob in Equation (1),
lp becomes more challenging to determine when
Nblob approaches
Nblob∞, at which point
lp tends to infinity. As shown in
Figure 5C, <
Nblob> ranges from 42 (±4) for PyC
4-PC
1MA to 18 (±2) for PyC
4-PC
18MA, the latter value approaching the
Nblob∞ value of 12. In fact, a 1.65 nm
lp value was obtained for PyC
4-PC
18MA with
NS2 = 400, which would have been off the straight line in
Figure 6, suggesting that the <
Nblob> value of 18 for PC
4-PC
18MA might be too close to
Nblob∞ to recover an accurate
lp. Larger
Nblob values can be retrieved by using a pyrene derivative with a longer linker since a longer linker enables a pyrenyl label to probe a larger
blob resulting in a larger
Nblob value [
37,
39]. However, the linker should not be too long, as in the case of the penta(ethylene glycol) linker used for the PyEG
5-PEG
nMA samples, which could not fully deploy during the time a pyrenyl label remained excited despite the long lifetime of pyrene [
20].
NblobMMO obtained from molecular mechanics optimization (MMO) for the PyEG
5-PEG
nMA samples was found to equal 41, whereas <
Nblob> only equaled 23 (±2) for the “fully extended” PyEG
5-PEG
19MA sample [
42], a clear indication that the pyrenyl label did not have sufficient time to fully deploy in solution. In summary, the PEF-based methodology is unlikely to yield the persistence length of stiff polymeric backbones like that of DNA or a-helical poly(
L-glutamic acid). Nevertheless, the still unknown persistence length of numerous polymers with more flexible backbones could be determined with the PEF-based methodology described in this report.
Another complication associated with PEF-based experiments is that the macromolecule under study should be photochemically inert over the range of wavelengths involved for the PEF experiments, with the pyrene derivatives being typically excited at 344 nm and their fluorescence being monitored between 360 and 600 nm (see
Figure 2). This condition precludes the application of PEF to fullerenes, carbon nanotubes, and many conjugated polymers whose spectral features interfere with those of pyrene.
Despite these drawbacks, the PEF-based methodology offers several advantages that should be considered over the more traditional techniques. The first one is that the use of a blob as a unit volume, which is much smaller than the polymer coil, makes the methodology impervious to the polydispersity of the polymer sample. Since a large or short polymer chain is described by many or few identical blobs, respectively, the focus of the study is shifted from the entire population of polydisperse chains to that of identical monodisperse blobs. This aspect represents a major advantage of the PEF-based methodology since it enables the study of polydisperse samples such as the PyC4-PCnMA and PyC4-PEGnMA samples investigated herein. Such polymer samples would otherwise be more challenging to characterize by scattering or viscosity experiments, which are much more sensitive to sample polydispersity.
The second advantage is the extreme sensitivity of PEF. Solutions with concentrations of pyrene-labeled polymers as low as 0.5 mg/L yield enough fluorescence signal to acquire the fluorescence spectra and decays required for a fluorescence analysis. While the use of traditional techniques such as scattering or viscometry always requires the extrapolation of trends obtained as a function of polymer concentration to zero-polymer concentration, this extrapolation step is irrelevant in fluorescence experiments since these experiments are conducted at polymer concentrations that are so low that they are equivalent to zero-polymer concentrations. This feature is most advantageous when working with macromolecules that are subject to intermacromolecular long-range electrostatic forces for protonated PAMAM dendrimers [
43] or are poorly soluble and might aggregate by working at higher concentrations. Consequently, and like any other technique, the PEF-based methodology described in this report possesses disadvantages and advantages that need to be considered before deciding on its application for the study of a macromolecule.
5. Conclusions
Although the chemical composition of the PyC
4-PC
nMA and PyC
4-PEG
nMA samples is quite different, with the side chains of the latter and former polymers being polar oligo(ethylene glycol) and apolar alkyl chains, both polymers shared similar conformations in solvents where they were both soluble, such as in THF [
19], toluene [
19], and now
o-xylene based on their similar <
Nblob>-vs.-
MWSU trends. Furthermore, the fact that the <
Nblob>-vs.-
MWSU trend obtained for PyC
4-PEG
nMA in DMF overlapped those of PyC
4-PC
nMA and PyC
4-PEG
nMA in
o-xylene further supported the notion that these trends depended solely on the solvent viscosity (and not its nature) and
MWSU, as shown in
Figure 5C. This outcome resulted from the similar architecture displayed by these polymer samples, which shared a common polymethacrylate backbone and linear side chains.
The similar conformations expected from the <
Nblob>-vs.-
MWSU trends shown in
Figure 5C for the PyC
4-PC
nMA and PyC
4-PEG
nMA samples in
o-xylene were confirmed by applying Equation (1) to extract
lp.
lp was found to increase linearly with increasing
NS2 in
Figure 6, as expected from theoretical predictions [
26]. Within experimental error, all
lp-vs.-
NS2 trends shown in
Figure 6 agreed with each other, confirming the ability of these PEF experiments to retrieve
lp. Furthermore, the
lp values obtained from the PEF experiments with the PyC
4-PC
nMA samples in
o-xylene were in good agreement with those reported for PC
nMA samples obtained by viscometry, which validated the
lp values retrieved from PEF measurements. Consequently, this study confirms the capability of PEF experiments to characterize the conformation of linear chains in solution through the determination of
lp. By taking advantage of fluorescence to conduct these experiments at very low polymer concentrations, the PEF-based methodology described herein complements the more traditional techniques, such as viscometry, scattering, and GPC, which are also used to determine
lp but at usually much higher polymer concentrations.