Diversity of Picorna-Like Viruses in the Teltow Canal, Berlin, Germany
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sample Collection and Workup
2.2. Illumina Sequencing, Sequence Data Processing, and Virus Sequence Analyses
3. Results
3.1. Sequencing, Assembly, and Identification of Viral Sequences
3.2. Phylogenetic Analyses
3.2.1. Marnaviridae and Related Viruses
3.2.2. Dicistroviridae and Related Viruses
3.2.3. Solinviviridae and Related Viruses
3.2.4. Iflaviridae and Related Viruses
3.2.5. Polycipiviridae and Related Viruses
3.2.6. Picornaviridae and Related Viruses
3.2.7. Noraviridae and Related Viruses
3.2.8. Posaviruses and Related Viruses
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Family | Genus | No. of Sequences | Σ |
---|---|---|---|
Caliciviridae | 11 genera | 0 | 0 |
Dicipiviridae * | Aparavirus | 0 | 98 |
Cripavirus | 3 | ||
Triatovirus | 0 | ||
Untypeable | 95 | ||
Iflaviridae * | Iflavirus | 3 | 3 |
Marnaviridae * | Bacillarnavirus | 0 | 158 |
Kusarnavirus | 0 | ||
Labyrnavirus | 10 | ||
Locarnavirus | 106 | ||
Marnavirus | 3 | ||
Salisharnavirus | 8 | ||
Sogarnavirus | 11 | ||
Untypeable | 20 | ||
Noraviridae * | Orthonoravirus | 0 | 4 |
Untypeable | 4 | ||
Picornaviridae * | Ampivirus | 1 | 10 |
Kobuvirus | 1 | ||
66 other genera | 0 | ||
Untypeable | 8 | ||
Polycipiviridae * | Chipolycivirus | 4 | 6 |
Hupolycivirus | 0 | ||
Sopolycivirus | 0 | ||
Untypeable | 2 | ||
Secoviridae | 8 genera | 0 | 0 |
Solinviviridae * | Invictavirus | 0 | 11 |
Nyfulvavirus | 0 | ||
Untypeable | 11 | ||
Unclassified family | Unclassified genus | 106 | 106 |
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Zell, R.; Groth, M.; Selinka, L.; Selinka, H.-C. Diversity of Picorna-Like Viruses in the Teltow Canal, Berlin, Germany. Viruses 2024, 16, 1020. https://doi.org/10.3390/v16071020
Zell R, Groth M, Selinka L, Selinka H-C. Diversity of Picorna-Like Viruses in the Teltow Canal, Berlin, Germany. Viruses. 2024; 16(7):1020. https://doi.org/10.3390/v16071020
Chicago/Turabian StyleZell, Roland, Marco Groth, Lukas Selinka, and Hans-Christoph Selinka. 2024. "Diversity of Picorna-Like Viruses in the Teltow Canal, Berlin, Germany" Viruses 16, no. 7: 1020. https://doi.org/10.3390/v16071020