An Automated Pipeline for Extracting Forest Structural Parameters by Integrating UAV and Ground-Based LiDAR Point Clouds
Abstract
:1. Introduction
- It introduces a pipeline for the automatic measurement of forest structural parameters on a large scale using ULS point cloud data. This resolves the issue of automating high-precision measurements of forest information over extensive forest areas, which was challenging when using laser radar data from a single source, whether ULS or TLS, for tree structure modeling.
- It proposes an automated matching method for individual trees in TLS point clouds and their corresponding trees in ULS point clouds, based on tree structures. This overcomes the problem commonly encountered with point-based registration methods, which often have high consistency requirements between TLS and ULS point cloud data, making them impractical for real-world applications.
- It introduces a method for augmenting and correcting ULS point cloud sample data, using DBH calculated from TLS point clouds. This addresses the issue of significant bias in the DBH estimation equation, resulting from errors in DBH directly calculated from ULS point clouds.
2. Materials and Methods
2.1. Study Site and Research Data
2.1.1. Study Site
2.1.2. Point Cloud Data Acquisition Method
2.1.3. Manual Field Measurements
2.2. Methodology
2.2.1. Overview of the Pipeline
- Data input: large-scale forest point clouds, acquired using drones and ground-based equipment, (in *.pcd file format) are used as input data for the large-scale modeling method.
- Digital elevation model (DEM) extraction: To perform subsequent segmentation of tree point clouds and obtain accurate tree height, a complete DEM needs to be established. The cloth simulation filter (CSF)-based algorithm [40] has been proven to be one of the best-performing ground point segmentation methods. Due to the high-density nature of ULS point clouds and the threshold settings during the CSF filtering process, a large number of non-ground points are included. Therefore, unlike traditional ground elevation modeling methods, downsampling, rather than upsampling, is required during ULS point cloud modeling for denoising purposes. The Delaunay triangulation of the resulting ground point cloud ultimately achieves automated and precise extraction of ground elevation models. Due to CSF’s point cloud inversion property, it is also applicable to DEM generation from TLS point clouds.
- Single-tree point cloud segmentation: Processing the ULS and TLS tree point clouds involves extracting the portions above a given DEM threshold (e.g., 0.5 m) as input for single-tree segmentation within the point cloud. This step requires assigning indices to segmented single-tree instances. To accomplish the task of automatically segmenting single-tree point clouds in large-scale areas, a method based on deep supervised machine learning for tree detection, segmentation, and trunk reconstruction, as proposed by Windrim et al. [41], is employed. This algorithm is designed specifically for high-resolution aerial LiDAR point clouds and can segment individual trees, identify trunk points, and further build a main stem segmentation model including tree height, diameter, taper, and sweep. The basic idea of the algorithm is to project the tree point cloud into a bird’s eye view (BEV) representation, and then train a Faster R-CNN [42] network with a Resnet-101 backend [43] for segmenting single-tree point clouds. Once each individual tree is detected as a group of 3D points, these points can be further segmented into two parts, stem and canopy, using the PointNet [44] network.
- Single-tree structural feature consistency matching: Differing from existing point-based methods for matching point clouds from different sources, this paper proposes a structural consistency search algorithm to match single-tree point clouds segmented from ULS point clouds with those segmented from TLS point clouds, establishing a dataset for estimating allometric growth models. If a limited number of single-tree point clouds are obtained from the provided TLS point cloud, ULS tree point clouds with distinct main stem features, obtained in step 3, can also be used as model estimation data. Tree height, crown diameter, and DBH calculations are performed directly on these single-tree point clouds. Utilizing the obtained quantitative structural data from these trees, an allometric growth model for the current sample area can be established. These quantitative structural parameters from this portion of trees will also be part of the overall measurement results.
- For trees in ULS point clouds with poor quality or for incomplete main stem point clouds, their tree height and crown diameter are directly extracted. These values are then input into the allometric growth model, established in step 4, to obtain estimated DBH parameters.
2.2.2. Tree Structure Consistency Assessment Method
- The object being sought unquestionably exists within the collection of tree point clouds segmented from ULS data.
- The same tree exhibits similar topological structures across various sources of point clouds, even in cases where certain branches may remain unobserved in some of the source point clouds.
- Constructing the Branching Structure of Single Trees from Point Clouds
- Node Feature Representation
- To calculate the feature representation of nodes, we perform a depth-first traversal from the root node, computing the depth ‘r’ for all branch nodes. These depth values serve as weighting coefficients for the individual branch nodes. This consideration is primarily based on the growth characteristics of trees, where the main trunk often has the most branches. The decision to use weighting for node similarity calculations depends on whether we believe the main trunk contributes more to tree similarity.
- We calculate the structural features of each branch node ‘t’ and represent them as a two-dimensional feature matrix. Taking a branch node with three child nodes as an example, the structure is depicted in Figure 7.
- Two-Dimensional Feature Matrix Similarity Assessment
- For the two feature matrices to be evaluated, Am×m+1 and Bn×n+1, if m = n and for all aij and bij, |aij − bij| < µ (µ being the similarity measurement threshold), they are considered fully isomorphic, and the node similarity is 1.
- If m = n and for all aij and bij, |aij − bij| ≥ µ (µ being the similarity measurement threshold), they are considered fully heterogeneous, and the node similarity is 0.
- If m = n, then if the number of elements satisfying |aij − bij| ≥ µ (µ being the similarity measurement threshold) is x, and the number of valid elements in A and B is y (N = (m × m + 3)/2), the node similarity is x/y.
- If m < n, sequentially delete the rows and columns corresponding to the n–m nodes in B, and calculate the similarity according to the above rules, taking the maximum value q × m/n as the node similarity.
- Tree Similarity Assessment
2.2.3. Methods for Calculating Tree Height and Crown Diameter
- Tree Height Calculation
- Calculation of Crown Diameter
- The tree crown point cloud undergoes vertical segmentation at 0.1 m intervals.
- Each segment is subjected to a convex hull fitting process within the xoy coordinate system.
- The maximum Euclidean distance between the centroids of these convex hulls is calculated, as exemplified in Figure 10a.
- CBH is ascertained through segmented regression, pinpointing the height at which the regression slope experiences a pronounced increase, often indicative of the presence of branches.
- Points situated above the CBH are categorized as part of the tree crown, as depicted in Figure 10b, and are employed for calculating the crown diameter (CD) using the formula defined in Equation (4), where ‘S’ denotes the crown projection area.
2.2.4. Calculation and Estimation Methods for DBH
- Method for Calculating DBH Based on Point Clouds
- The single-tree point cloud is first corrected, and at a vertical distance of 1.25–1.35 m above the lowest point in the corrected single-tree point cloud, the trunk point cloud is sliced, as depicted in Figure 11a.
- Points within the tree slice are projected onto the x–y plane, convex hulls are computed to generate two polygons, and Gaussian smoothing is applied to them to better fit the actual trunk slice. It is assumed that the trunk boundary lies between the “inner” and “outer” polygon boundaries, as illustrated in Figure 11b.
- Ten sets of perpendicular lines, passing through the centroids of the “inner” and “outer” contours, are randomly generated. Each set of lines takes the form of D1 and D2, as shown in Figure 11c. The average of D1 and D2 for each set is considered one measurement.
- The mean square error is computed for the ten measurements. If the mean square error exceeds the slice thickness, the slice point cloud is deemed incomplete or inadequate for representing the trunk, and the DBH estimation for that instance is discarded. Otherwise, the average of the ten measurements is taken as the final DBH measurement, as illustrated in Figure 11c.
- Method for DBH Estimation Based on Tree Height and Crown Diameter
- Method for Augmenting and Correcting ULS Point Cloud Sample Data
- 1.
- Pairwise Point Cloud Matching and High-Precision Sampling
- 2.
- Processing ULS Point Clouds
- Sample Precision and Regression Enhancement
3. Results
3.1. Experimental Results on Chinese Scots Pine Plot
3.2. Experimental Results on Mongolian Oak Plot
4. Discussion
4.1. Selection of Experimental Plots
4.2. Tree Height Measurement Performance Based on ULS Point Clouds
4.3. Diameter Measurement and Estimation Performance
4.4. Diameter Prediction Performance Based on Point Cloud Measurement Data
5. Conclusions
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
Correction Statement
References
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Equipment Parameters | Scanning Configuration |
---|---|
Flight altitude | 35 m |
Flight speed | 3 m/s |
Point cloud density | 1772 points/m2 |
Flight strip overlap | 65% |
Heading angle | 28° |
Echo mode | Triple |
Sampling rate | 160 kHz |
Scanning mode | Repeat |
Data Categories | Parameters | Manual Measurement Values (cm) | Values Estimated from ULS/TLS Point Clouds (cm) |
---|---|---|---|
Height | Mean | 13.71 | 13.70 |
Median | 13.65 | 13.44 | |
Maximum | 20.10 | 20.29 | |
Minimum | 8.61 | 8.28 | |
DBH | Mean | 21.50 | 21.31 |
Median | 20.65 | 21.28 | |
Maximum | 40.46 | 44.24 | |
Minimum | 10.83 | 5.29 | |
Number of trees | 259 | 24,695 (%) |
Data Categories | Parameters | Manual Measurement Values (cm) | Values Estimated from ULS/TLS Point Clouds (cm) |
---|---|---|---|
Height | Mean | 13.72 | 13.77 |
Median | 13.53 | 13.48 | |
Maximum | 22.99 | 23.26 | |
Minimum | 6.21 | 3.97 | |
DBH | Mean | 18.88 | 18.62 |
Median | 18.48 | 19.06 | |
Maximum | 29.35 | 34.41 | |
Minimum | 11.04 | 7.00 | |
Number of trees | 223 | 191 (85.6%) |
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Xu, D.; Chen, G.; Zhang, S.; Jing, W. An Automated Pipeline for Extracting Forest Structural Parameters by Integrating UAV and Ground-Based LiDAR Point Clouds. Forests 2023, 14, 2179. https://doi.org/10.3390/f14112179
Xu D, Chen G, Zhang S, Jing W. An Automated Pipeline for Extracting Forest Structural Parameters by Integrating UAV and Ground-Based LiDAR Point Clouds. Forests. 2023; 14(11):2179. https://doi.org/10.3390/f14112179
Chicago/Turabian StyleXu, Dali, Guangsheng Chen, Shuming Zhang, and Weipeng Jing. 2023. "An Automated Pipeline for Extracting Forest Structural Parameters by Integrating UAV and Ground-Based LiDAR Point Clouds" Forests 14, no. 11: 2179. https://doi.org/10.3390/f14112179
APA StyleXu, D., Chen, G., Zhang, S., & Jing, W. (2023). An Automated Pipeline for Extracting Forest Structural Parameters by Integrating UAV and Ground-Based LiDAR Point Clouds. Forests, 14(11), 2179. https://doi.org/10.3390/f14112179