Lack of Association between Cytokine Genetic Polymorphisms in Takayasu’s Arteritis in Mexican Patients
Abstract
1. Introduction
2. Materials and Methods
2.1. Subjects
2.2. DNA Preparation
2.3. Statistical Analysis
3. Results
4. Discussion
5. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Gene Localization | Chromosomal | Gene Name | Total SNPs Studied | Marker (db SNP ID) | Site Polymorphic |
---|---|---|---|---|---|
IL-10 | 1q31 | Interleukin-10 | 3 | rs1800896 | IL-10 −1082 A/G |
rs1800871 | IL-10 −819 C/T | ||||
rs1800872 | IL-10 −592 A/C | ||||
TNF-α | 6p21 | Tumor necrosis factor-alpha | 2 | rs361525 | TNF-α −238 A/G |
rs1800629 | TNF-α −308 A/G | ||||
IFN-γ | 12q15 | Interferon-gamma | 2 | rs2069709 | IFN-γ −179 G/T |
rs2069710 | IFN-γ −155 G/A | ||||
TGF-β | 19q13.2 | Transforming growth factor beta | 2 | rs1800469 | TGF-β −509 T/C |
rs1800470 | TGF-β 29 T/C |
Demographic Features | Takayasu’s Patients | Healthy Controls | p |
---|---|---|---|
Total subjects (n) | |||
Female | 50 | 48 | 0.021 a |
Male | 2 | 12 | |
Age (years) | 28 | 34.7 | 0.158 b |
Medium | (13–52) | (17–51) | |
Hata’s classification (%) | |||
Type I | 9.6 | - | |
Type II | 7.7 | - | |
Type III | 5.7 | - | |
Type IV | 0 | - | |
Type V | 76.9 | - | |
Activity (%) | |||
Yes | 61.5 | - | |
No | 38.5 | - | |
Blood pressure (mmHg ± SD) | |||
Diastolic | 82.93 ± 28.5 | 78.80 ± 9.6 | 0.068 c |
Systolic | 140.34 ± 22.3 | 122.61 ± 17.3 | 0.004 c |
Gene | Genotype | Controls | Patients | p | OR (95% CI) | ||
---|---|---|---|---|---|---|---|
n | % | n | % | ||||
TNF-α-238 | GG | 59 | 98.3 | 49 | 94.2 | 0.335 | 0.271 (0.02–2.74) |
GA | 1 | 1.7 | 3 | 5.8 | 0.339 | 0.283 (0.02–2.76) | |
AA | 0 | 0 | 0 | 0 | - | - | |
Alleles | |||||||
G | 119 | 99.1 | 101 | 97.1 | 0.339 | 0.282 (0.02–2.76) | |
A | 1 | 0.9 | 3 | 2.9 | - | - | |
TNF-α-308 | GG | 51 | 85 | 45 | 86.5 | 0.819 | 1.000(0.40–2.45) |
GA | 9 | 15 | 7 | 13.5 | 0.946 | 0.947 (0.55–1.60) | |
AA | 0 | 0 | 0 | 0 | - | - | |
Alleles | |||||||
G | 111 | 92.5 | 97 | 93.3 | 0.970 | 1012 (0.40–3.18) | |
A | 9 | 7.5 | 7 | 6.7 | - | - | |
TGF-β-509 | TT | 17 | 28.3 | 11 | 21.1 | 0.511 | 0.678 (0.28–1.62) |
TC | 23 | 38.8 | 26 | 50.0 | 0.293 | 1.608 (0.75–3.41) | |
CC | 20 | 33.3 | 15 | 28.8 | 0.759 | 0.810 (0.36–1.81) | |
Alleles | |||||||
T | 57 | 47.5 | 48 | 46.1 | 0.946 | 0.947 (0.55–1.60) | |
C | 63 | 52.5 | 56 | 53.4 | - | - | |
TGF-β 29 | TT | 17 | 28.3 | 13 | 25.0 | 0.854 | 0.843 (0.36–1.95) |
TC | 25 | 41.7 | 27 | 51.9 | 0.370 | 1.512 (0.71–3.19) | |
CC | 18 | 30 | 12 | 23.0 | 0.541 | 0.700 (0.29–1.63) | |
Alleles | |||||||
T | 59 | 49.1 | 53 | 50.9 | 0.893 | 1.07 (0.63–1.81) | |
C | 61 | 50.9 | 51 | 49.1 | - | - | |
IFN-γ-179 | GG | 57 | 95 | 50 | 96.2 | 0.869 | 1.315 (0.21–8.19) |
GT | 3 | 5 | 2 | 3.8 | 0.869 | 0.760 (0.12–4.73) | |
TT | 0 | 0 | 0 | 0 | - | - | |
Alleles | |||||||
G | 117 | 97.5 | 102 | 98.1 | 0.871 | 1.30 (0.21–7.98) | |
T | 3 | 2.5 | 2 | 1.9 | - | - | |
IFN-γ-155 | AA | 60 | 100 | 52 | 100 | - | - |
AG | 0 | 0 | 0 | 0 | - | - | |
GG | 0 | 0 | 0 | 0 | - | - | |
Alleles | - | - | |||||
A | 120 | 100 | 104 | 100 | - | - | |
G | 0 | 0 | 0 | 0 | - | - | |
IL-10-592 | AA | 8 | 13.3 | 5 | 9.6 | 0.751 | 0.691 (0.27–2.62) |
AC | 30 | 50 | 28 | 53.8 | 0.828 | 1.166 (0.55–2.45) | |
CC | 22 | 36.7 | 19 | 36.5 | 0.855 | 0.994 (0.46–1.59) | |
Alleles | |||||||
A | 46 | 38.3 | 38 | 36.5 | 0.890 | 0.926 (0.53–1.59) | |
C | 74 | 61.7 | 66 | 63.5 | - | - | |
IL-10-819 | TT | 8 | 13.3 | 6 | 11.5 | 1.000 | 0.847 (0.27–2.62) |
TC | 27 | 45 | 26 | 50.0 | 0.734 | 1.222 (0.58–2.57) | |
CC | 25 | 41.7 | 20 | 38.5 | 0.879 | 0.875 (0.40–1.86) | |
Alleles | |||||||
T | 43 | 35.8 | 38 | 36.5 | 0.976 | 1.031 (0.59–1.78) | |
C | 77 | 64.2 | 66 | 63.5 | - | - | |
IL-10-1082 | AA | 32 | 53.3 | 23 | 49.2 | 0.440 | 0.693 (0.32–1.46) |
AG | 26 | 43.3 | 27 | 51.9 | 0.472 | 1.412 (0.66–2.97) | |
GG | 2 | 3.3 | 2 | 3.8 | 0.715 | 1.160 (0.15–8.53) | |
Alleles | |||||||
A | 90 | 75 | 74 | 71.1 | 1.619 | 0.822 (0.45–1.48) | |
G | 30 | 25 | 30 | 28.9 | - | - |
IL-10 | Haplotype Frequency | TNF-α | Haplotype Frequency | TGF-β | Haplotype Frequency |
---|---|---|---|---|---|
CCA | 0.357 | GG | 0.911 | TC | 0.467 |
ATA | 0.352 | GA | 0.071 | CT | 0.435 |
CCG | 0.259 | AG | 0.018 | CC | 0.065 |
ACA | 0.023 | TT | 0.033 |
IL-10 −592 | pC | OR (CI 95%) | IL-10 −819 | pC | OR (CI 95%) | IL-10 −1082 | pC | OR (CI 95%) | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
A | C | - | - | T | C | - | - | A | G | - | - | |
Our study | 36.5 | 63.5 | - | - | 36.5 | 63.5 | - | - | 71.1 | 28.9 | - | - |
Korean [33] | 78.6 | 21.4 | 0.0001 | 0.20 (0.13–0.31) | 73.3 | 26.7 | 0.0001 | 0.20 (0.13–0.32) | 93.9 | 6.1 | 0.0001 | 0.16 (0.05–0.27) |
Tunisian [34,35,36,37,38,39] | 20.0 | 80 | 0.0003 | 96.9 (29.7–31.0) | 19.2 | 80.8 | 0.0002 | 2.12 (1.53–3.80) | 44.7 | 55.3 | 0.0001 | 3.10 (1.94–4.96) |
German [40] | 28.2 | 71.8 | 0.1060 | 7.30 (2.20–24.1) | 28.2 | 71.8 | 0.1065 | 1.46 (0.94–2.25) | 54.7 | 45.3 | 0.0019 | 2.08 (1.32–3.20) |
TNF-α −238 | TNF-α −308 | |||||||||||
G | A | pC | OR (CI 95%) | G | A | pC | OR (CI 95%) | - | - | - | - | |
Our study | 97.1 | 2.9 | - | - | 93.7 | 6.7 | - | - | - | - | - | - |
Indian [41] | 91.6 | 8.3 | 0.1117 | 3.06 (0.87–10.6) | 93.0 | 7.0 | 0.223 | 2.53 (0.71–9.02) | - | - | - | - |
Taiwanese [42] | 82.1 | 17.8 | 0.0004 | 7.30 (2.20–24.1) | 98.6 | 1.4 | 0.612 | 0.46 (0.09–2.34) | - | - | - | - |
Iranian [43] | 25.8 | 74.2 | 0.0001 | 96.9 (29.7–31.6) | 92.8 | 7.2 | 0.213 | 2.62 (0.72–9.52) | - | - | - | - |
TGF-β −509 | TGF-β −29 | |||||||||||
T | C | pC | OR (CI 95%) | T | C | pC | OR (CI 95%) | - | - | - | - | |
Our study | 46.1 | 56.4 | - | - | 50.9 | 49.1 | 0.0010 | - | - | - | - | - |
Iranian [44] | 39.8 | 60.2 | 0.3471 | 1.26 (0.80–0.09) | 31.0 | 69.0 | 0.8081 | 2.31 (1.42–3.76) | - | - | - | - |
Chinese [45] | - | - | - | - | 48.9 | 51.1 | 0.9125 | 1.08 (0.69–1.70) | - | - | - | - |
Caucasian [46] | - | - | - | - | 49.8 | 50.2 | - | 1.04 (0.68–1.61) | - | - | - | - |
Taiwanese [47] | 44.5 | 55.4 | 0.9726 | 0.97 (0.61–1.56) | - | - | - | - | - | - | - | - |
Spanish [48] | 66.5 | 33.5 | 0.0001 | 0.43 (0.28–0.65) | - | - | - | - | - | - | - | - |
IFN-γ −179 | IFN-γ −155 | |||||||||||
G | T | pC | OR (CI 95%) | A | G | pC | - | - | - | - | ||
Our study | 98.1 | 1.9 | - | - | 100 | 0.0 | - | - | - | - | - | - |
Chinese [49] | - | - | - | - | 100 | 0.0 | - | - | - | - | - | - |
Sudanese [50] | 99.5 | 0.5 | 0.5383 | 0.24 (0.02–1.74) | - | - | - | - | - | - | - | - |
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Soto, M.E.; Huesca-Gómez, C.; Torres-Paz, Y.; Fuentevilla-Álvarez, G.; Gamboa, R. Lack of Association between Cytokine Genetic Polymorphisms in Takayasu’s Arteritis in Mexican Patients. Int. J. Environ. Res. Public Health 2019, 16, 4863. https://doi.org/10.3390/ijerph16234863
Soto ME, Huesca-Gómez C, Torres-Paz Y, Fuentevilla-Álvarez G, Gamboa R. Lack of Association between Cytokine Genetic Polymorphisms in Takayasu’s Arteritis in Mexican Patients. International Journal of Environmental Research and Public Health. 2019; 16(23):4863. https://doi.org/10.3390/ijerph16234863
Chicago/Turabian StyleSoto, María Elena, Claudia Huesca-Gómez, Yazmín Torres-Paz, Giovanny Fuentevilla-Álvarez, and Ricardo Gamboa. 2019. "Lack of Association between Cytokine Genetic Polymorphisms in Takayasu’s Arteritis in Mexican Patients" International Journal of Environmental Research and Public Health 16, no. 23: 4863. https://doi.org/10.3390/ijerph16234863
APA StyleSoto, M. E., Huesca-Gómez, C., Torres-Paz, Y., Fuentevilla-Álvarez, G., & Gamboa, R. (2019). Lack of Association between Cytokine Genetic Polymorphisms in Takayasu’s Arteritis in Mexican Patients. International Journal of Environmental Research and Public Health, 16(23), 4863. https://doi.org/10.3390/ijerph16234863