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Short Note

2-(5,6-Diphenyl-1,2,4-Triazin-3-yl)pyridinium Dichloroiodate (I)

1
Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Cagliari, S.S. 554 bivio Sestu, Monserrato, 09042 Cagliari, Italy
2
Centro Servizi di Ateneo per la Ricerca (CeSAR), Università degli Studi di Cagliari, S.S. 554 bivio Sestu, Monserrato, 09042 Cagliari, Italy
3
UK National Crystallography Service, School of Chemistry, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton SO17 1BJ, UK
*
Authors to whom correspondence should be addressed.
Molbank 2023, 2023(2), M1662; https://doi.org/10.3390/M1662
Submission received: 18 May 2023 / Revised: 26 May 2023 / Accepted: 1 June 2023 / Published: 7 June 2023
(This article belongs to the Section Structure Determination)

Abstract

:
2-(5,6-diphenyl-1,2,4-triazin-3-yl)pyridinium dichloroiodate (I) (1) was synthesized by reacting 3-(2-pyridyl)-5,6-diphenyl-1,2,4-triazine with ICl in dichloromethane solution. The structural characterization of 1 by SC-XRD analysis was accompanied by elemental analysis, FT-IR, and FT-Raman spectroscopy measurements.

1. Introduction

Polypyridine donors react with interhalogens XY and dihalogens X2 (X, Y = Cl, Br, I) to give a variety of products whose nature depend on the nature of the donor, the interhalogen, and the reaction conditions [1,2,3,4]. Among the possible reaction products, charge-transfer adducts containing the N–X–Y linear group [5,6], halonium compounds featuring a N–X+–N moiety [5,7,8], or salts where a N-protonated pyridinium cation is counterbalanced by discrete [3] or extended [9] (poly)halide anions can be mentioned. FT-Raman spectroscopy can provide useful information on the nature of the resulting products [1,3,9,10]. In simple CT-adducts, the adduct formation results in an elongation of the X–Y bond with respect to the free halogen/interhalogen [3,4]. When polyhalides are formed, the peculiar stretching vibrations of the interacting synthons, such as neutral (inter)halogens and tri(inter)halides, can be detected in the low-energy region of the FT-Raman spectrum [1,2,3,4].
3-(2-Pyridyl)-5,6-diphenyl-1,2,4-triazine [11,12] (Scheme 1) has often been reported as an efficient donor towards a variety of metal ions [13,14,15,16]. Notwithstanding, the reactivity of this donor towards halogens or interhalogens has not been described to date. Pursuing our interest towards the reactivity of the polypyridyl substrate towards ICl [1,2,3,4], we report here on the synthesis and structural and vibrational characterization of the novel salt 2-(5,6-diphenyl-1,2,4-triazin-3-yl)pyridinium dichloroiodate (I) (1).

2. Results

The reaction of 3-(2-pyridyl)-5,6-diphenyl-1,2,4-triazine (L; Scheme 1) with ICl in molar ratios 1:0.5, 1:1, 1:2, and 1:5 in CH2Cl2 yielded a crystalline product featuring the same microanalytical (elemental analysis, melting point determination) and spectroscopic (FT-IR, FT-Raman) features. Since crystals were collected before dryness, the reaction yield could not be determined. Single-crystal X-ray diffraction analysis revealed the reaction product to be (HL)[ICl2] (1; Figure 1). Compound 1 crystallizes in the monoclinic space group P21/c with four molecules in the unit cell.
Crystal data for compound 1: C20H15Cl2IN4, (Mr = 509.16 g mol−1) monoclinic, P21/c (No. 14), a = 17.7427(13) Å, b = 7.4326(5) Å, c = 15.5351(12) Å, β = 100.659(7)°, α = γ = 90°, V = 2013.3(3) Å3, T = 120(2) K, Z = 4, Z’ = 1, µ(Mo Kα) = 1.868 mm−1, 19,110 reflections measured, 4624 unique (Rint = 0.0302), which were used in all calculations. The final wR2 was 0.0634 (all data) and R1 was 0.0270 [F2 ≥ 2 σ(F2)].
The asymmetric unit of compound 1 consists of a donor molecule protonated at the N4 pyridine nitrogen atom counterbalanced by a classical [17,18] [ICl2] anion. Protonation of (poly)pyridyl donors as a result of the reaction with dihalogens or interhalogens is not unusual and it has been attributed to solvolysis or reaction with incipient moisture [1].
In the HL+ cation, the two phenyl rings and the pyridine rings of the donor are rotated by 38.3(3), 47.7(3), and 12.6(3)° with respect to the plane of the triazine ring, respectively. Notwithstanding no crystal structures featuring the HL+ cation have been deposited to date, these torsion angles can be compared to those featured by the two polymorphs (CSD codes HEWLOL and HEWLOL01) reported for L (phenyl torsions: 32.4(1) and 53.6(1)°; pyridine torsion 1.0(1)° for HEWLOL; [11] 32.2(2), 56.2(2), and 9.1(2)° for HEWLOL01 [12]) and the corresponding values optimized at the density functional theory (DFT) level [19,20] for L (phenyl torsion, 29.6 and 34.6°; pyridine torsion, 6.1°) and HL+ (phenyl torsion, 30.9 and 38.1°; pyridine torsion, 4.4°), suggesting that electronic factors rather than crystal packing interactions are responsible for the nonplanar conformation of the ligand.
The Cl2 terminal atom of the [ICl2] anion is involved in a hydrogen bonding (HB) interaction with the pyridinium moiety (interaction a in Figure 2 and Table 1). The HB interaction results in a remarkable asymmetry of the [ICl2] anion (Cl1–I1, 2.4856(8); Cl2–I1, 2.6005(6) Å; Cl1–I1–Cl2, 178.27(2)°). The Cl1 and Cl2 atoms further interact with the H20i and H13ii protons of different symmetry-related adjacent HL+ units (interactions b and c in Table 1 and Figure 2; i = 1 x , 1 2 + y ,   3 2 z ; ii =   x , 3 2 y , 1 2 + z ). These interactions, along a set of weak C–H···N contacts (Table 1), generate the crystal packing, seen along the b-axis in Figure 2.
The FT-Raman spectrum of compound 1 shows the expected band due to the symmetric stretching mode peculiar to the [ICl2] ion at 278 cm−1 (Figure 3), in excellent agreement with the corresponding values calculated at the hybrid-DFT level (ν(σg) = 257, ν(σu) = 238 cm−1). The πu bending mode is calculated at 108 cm−1 and can be envisaged both in the FT-Raman and in the FT-FIR spectra within the complex envelope of bands at about 100 cm−1 (Figure S3). Notably, the wavenumbers of the stretching and bending modes are very close to those previously reported for different compounds featuring (poly)pyridinium cations balanced by classical [ICl2] anions, for which the stretching and the bending modes were reportedly in the range of 265–285 cm−1 and 85–90 cm−1, respectively [1,2,3,4,21].

3. Materials and Methods

3.1. General

All the reagents and solvents were purchased from Sigma-Aldrich or Lancaster and used without further purification. Elemental analyses were performed with an EA1108 CHNS-O Fisons instrument. Infrared spectra were recorded on a Bruker IFS55 spectrometer at room temperature using a flow of dried air. Far-IR (500–50 cm−1) spectra (resolution 2 cm−1) were recorded as polythene pellets with a Mylar beam-splitter and polythene windows. Middle-IR spectra (resolution 2 cm−1) were recorded as KBr pellets, with a KBr beam-splitter and KBr windows. FT-Raman spectra were recorded (resolution of 2 cm−1) on a Bruker RFS100 FT-Raman spectrometer, fitted with an In–Ga–As detector (room temperature) operating with a Nd:YAG laser (excitation wavelength 1064 nm) with a 180° scattering geometry (excitation power 5 mW). The melting point was determined on a FALC mod. C apparatus. X-ray diffraction data for compound 1 were collected at 120(2) K by means of combined φ and ω scans with a Bruker Nonius KappaCCD area detector situated at the window of a rotating anode (graphite Mo-Kα radiation, λ = 0.71073 Å). The structure was solved with the ShelXT [22] solution program using dual methods and the model was refined with ShelXL [23] 2018/3 using full-matrix least-squares minimization on F2. Olex2 1.5 [24] was used as the graphical interface. DFT [19,20] calculations were carried out both on L, HL+, and [ICl2] at the DFT level with the commercial suite of programs Gaussian 16 [25] by adopting the mPW1PW hybrid functional [26]. The def2-SVP and def2-TZVP basis sets [27,28] were adopted for the atomic species of the L donor and the [ICl2] ion, respectively. Vibrational frequencies were calculated at the optimized geometries. GaussView [29] and PyFreq [30] were used to investigate the Kohn–Sham molecular orbital composition and the vibrational frequencies.

3.2. Synthesis of 2-(5,6-Diphenyl-1,2,4-Triazin-3-yl)pyridinium Dichloroiodate (I) (1)

To 2 mL of a CH2Cl2 solution of 3-(2-pyridyl)-5,6-diphenyl-1,2,4-triazine (26 mg, 8.4 × 10−5 mol), a 0.054 M solution of ICl in the same solvent was added dropwise in L:ICl molar ratios ranging between 1:0.5 and 1:5 (0.8 mL, 4.2 × 10−5 mol; 1.6 mL, 8.4 × 10−5 mol; 3.1 mL, 1.7 × 10−4 mol; 7.8 mL, 4.2 × 10−4 mol). The solution was allowed to concentrate slowly in air. After a few days, the solid product was separated and washed with light petroleum ether and dried under reduced pressure. Due to the experimental synthetic procedure, the reaction yield could not be determined. Elemental analysis calcd. for C20H15N4ICl2: 47.18; H, 2.97; N, 11.00%. Found: C, 47.23; H, 2.47; N, 11.28%. M.p. 218 °C. FT-MIR (KBr pellet, 4000–400 cm−1): 3467 m, 2362 m, 1624 m, 1612 s, 1608 m, 1538 m, 1506 m, 1445 m, 1410 s, 1375 m, 1306 m, 1227 s, 1164 s, 1005 m, 943 m, 783 m, 766 s, 755 s, 736 m, 692 m, 660 s, 539 m, 534 m, 510 m, 443 m, 416 w cm−1. FT-FIR (polythene pellet, 500–50 cm−1): 487 m, 444 m, 416 m, 402 s, 391 m, 366 m, 332 m, 319 m, 310 m, 284 m, 273 s, 260 s, 234 s, 218 s, 199 s, 191 s, 163 m, 145 m, 135 s, 129 s, 103 w, 95 m, 85 m, 67 s cm−1. FT-Raman (500–50 cm−1, 5 mW, relative intensities in parentheses related to the highest peak taken equal to 10.0): 278 (10.0), 163 (3.3), 131 (3.8), 94 (6.2), 73 (7.1) cm−1.

4. Conclusions

2-(5,6-diphenyl-1,2,4-triazin-3-yl)pyridinium dichloroiodate (I) (1) was synthesized and fully characterized. Further studies are ongoing in our laboratories to investigate the reactivity of 3-(2-pyridyl)-5,6-diphenyl-1,2,4-triazine towards different dihalogens and interhalogens and its potential role as a building block in the formation of extended supramolecular assemblies.

Supplementary Materials

The following supporting information can be downloaded online: Figures S1 and S2: FT-IR; Table S1: Crystal data and refinement parameters; Tables S2 and S3: Bond lengths and angles; Tables S4 and S5: DFT-optimized orthogonal Cartesian coordinates.

Author Contributions

Conceptualisation: M.A., M.C.A., V.L. and A.M.; data curation: M.C.A., E.P., A.P., M.A., A.M., J.B.O. and S.J.C.; investigation: M.C.A., V.L., A.M., A.P., E.P., J.B.O., S.J.C. and M.A.; writing—original draft: M.A. All authors have read and agreed to the published version of the manuscript.

Funding

The authors acknowledge Fondazione di Sardegna (FdS Progetti Biennali di Ateneo, annualità 2018) for financial support and EPSRC (Engineering and Physical Science Research Council) for continued support of the UK’s National Crystallography Service (NCS), based at the University of Southampton.

Data Availability Statement

Crystallographic data were deposited at CCCD (CIF deposition number 2263970).

Conflicts of Interest

The authors declare no conflict of interest.

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Scheme 1. Molecular scheme of 3-(2-pyridyl)-5,6-diphenyl-1,2,4-triazine (L).
Scheme 1. Molecular scheme of 3-(2-pyridyl)-5,6-diphenyl-1,2,4-triazine (L).
Molbank 2023 m1662 sch001
Figure 1. Ellipsoid plot of compound 1 with the numbering scheme adopted, viewed along the b-axis. Displacement ellipsoids are drawn at 50% probability level.
Figure 1. Ellipsoid plot of compound 1 with the numbering scheme adopted, viewed along the b-axis. Displacement ellipsoids are drawn at 50% probability level.
Molbank 2023 m1662 g001
Figure 2. Section of the crystal packing of compound 1 seen along the b-axis. Labelled contacts are described in Table 1.
Figure 2. Section of the crystal packing of compound 1 seen along the b-axis. Labelled contacts are described in Table 1.
Molbank 2023 m1662 g002
Figure 3. FT-Raman spectrum recorded for compound 1 in the solid state.
Figure 3. FT-Raman spectrum recorded for compound 1 in the solid state.
Molbank 2023 m1662 g003
Table 1. Intermolecular interactions of compound 1.
Table 1. Intermolecular interactions of compound 1.
Interaction dD–H (Å)dH∙∙∙A (Å)dD∙∙∙A (Å)αD–H···A (°)
aN4–H4∙∙∙Cl20.85(3)2.39(2)3.174(2)153(2)
bC20i–H20i∙∙∙Cl10.952.883.541(2)128.2
cC13ii–H13ii∙∙∙Cl20.952.703.610(3)160.9
dC12ii –H12ii ∙∙∙N30.952.663.291(3)124.5
eC14i–H14i···N20.952.623.425(3)143.2
i = 1 x , 1 2 + y ,   3 2 z ; ii =   x , 3 2 y , 1 2 + z .
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MDPI and ACS Style

Aragoni, M.C.; Lippolis, V.; Mancini, A.; Pintus, A.; Podda, E.; Orton, J.B.; Coles, S.J.; Arca, M. 2-(5,6-Diphenyl-1,2,4-Triazin-3-yl)pyridinium Dichloroiodate (I). Molbank 2023, 2023, M1662. https://doi.org/10.3390/M1662

AMA Style

Aragoni MC, Lippolis V, Mancini A, Pintus A, Podda E, Orton JB, Coles SJ, Arca M. 2-(5,6-Diphenyl-1,2,4-Triazin-3-yl)pyridinium Dichloroiodate (I). Molbank. 2023; 2023(2):M1662. https://doi.org/10.3390/M1662

Chicago/Turabian Style

Aragoni, M. Carla, Vito Lippolis, Annalisa Mancini, Anna Pintus, Enrico Podda, James B. Orton, Simon J. Coles, and Massimiliano Arca. 2023. "2-(5,6-Diphenyl-1,2,4-Triazin-3-yl)pyridinium Dichloroiodate (I)" Molbank 2023, no. 2: M1662. https://doi.org/10.3390/M1662

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