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Review

A Systematic Review and Meta-Analysis of Pharmacogenetic Studies in Patients with Chronic Kidney Disease

by
Maria Tziastoudi
1,*,†,
Georgios Pissas
1,
Georgios Raptis
2,
Christos Cholevas
3,
Theodoros Eleftheriadis
1,
Evangelia Dounousi
4,
Ioannis Stefanidis
1 and
Theoharis C. Theoharides
5
1
Department of Nephrology, Faculty of Medicine, School of Health Sciences, University of Thessaly, 41110 Larissa, Greece
2
Protypo Bioiatriko Laboratory, 41110 Larissa, Greece
3
AHEPA Hospital, First Department of Ophthalmology, Faculty of Health Sciences, School of Medicine, Aristotle University of Thessaloniki, 54621 Thessaloniki, Greece
4
Department of Nephrology, Faculty of Medicine, School of Health Sciences, University of Ioannina, 45110 Ioannina, Greece
5
Department of Immunology, Tufts University School of Medicine, Boston, MA 02155, USA
*
Author to whom correspondence should be addressed.
Current Address: Panepistimiou 3, Biopolis, 41500 Larissa, Greece.
Int. J. Mol. Sci. 2021, 22(9), 4480; https://doi.org/10.3390/ijms22094480
Submission received: 4 April 2021 / Revised: 18 April 2021 / Accepted: 22 April 2021 / Published: 25 April 2021
(This article belongs to the Section Molecular Pharmacology)

Abstract

:
Chronic kidney disease (CKD) is an important global public health problem due to its high prevalence and morbidity. Although the treatment of nephrology patients has changed considerably, ineffectiveness and side effects of medications represent a major issue. In an effort to elucidate the contribution of genetic variants located in several genes in the response to treatment of patients with CKD, we performed a systematic review and meta-analysis of all available pharmacogenetics studies. The association between genotype distribution and response to medication was examined using the dominant, recessive, and additive inheritance models. Subgroup analysis based on ethnicity was also performed. In total, 29 studies were included in the meta-analysis, which examined the association of 11 genes (16 polymorphisms) with the response to treatment regarding CKD. Among the 29 studies, 18 studies included patients with renal transplantation, 8 involved patients with nephrotic syndrome, and 3 studies included patients with lupus nephritis. The present meta-analysis provides strong evidence for the contribution of variants harbored in the ABCB1, IL-10, ITPA, MIF, and TNF genes that creates some genetic predisposition that reduces effectiveness or is associated with adverse events of medications used in CKD.

1. Introduction

Chronic kidney disease (CKD) continues to constitute a global health burden. It is known that CKD elevates the risk of cardiovascular disease, kidney failure, and other complications [1,2,3]. According to the Kidney Disease Outcomes Quality Initiative (KDOQI) classification, CKD is defined as kidney damage or glomerular filtration rate (GFR) < 60 mL/min/1.73 m2 for 3 months or more, irrespective of the cause [4]. Although significant progress has been made in the treatment of nephrology patients with both conservative therapies and dialysis or transplantation, the emergence of drug-related problems such as ineffectiveness and side effects represents a major issue [5]. Pharmacogenetics could fill this gap [6].
Over the last 30 years, new drugs have been introduced to treat major kidney diseases, slow down the progression of CKD, and reduce the development of clinical complications associated with dialysis and kidney transplantation [7]. The use of different combinations of potent immunosuppressive drugs in transplant patients (calcineurin inhibitors, mammalian target of rapamycin inhibitors (mTORs), corticosteroids) have significantly improved the treatment of various renal disorders, and the short- and long-term pharmacological management of renal graft recipients [8].
In general, currently approved immunosuppressive drugs for maintenance therapy include calcineurin inhibitors (cyclosporine (CsA), tacrolimus (TAC)), mTOR inhibitors (sirolimus (SIR), everolimus), antiproliferatives (azathioprine (AZA) and mycophenolic acid (MPA)) and biologic drugs (belatacept) [9]. Differences between individuals regarding the efficacy and safety of immunosuppressive treatment are determined to some extent by genetic factors. For example, a common nonfunctional splicing variant, CYP3A5*3 (rs776746), determines TAC doses [10]. More specifically, patients with the CYP3A5*3/*3 genotype require less TAC to reach target concentrations compared with cytochrome P450 family 3 subfamily A member 5 (CYP3A5) CYP3A5*1 allele carriers [11]. Tacrolimus pharmacokinetic and pharmacodynamic variability is also attributed to ATP binding cassette subfamily B member 1 (ABCB1) variants: 1236C > T (rs1128503), 2677G > T/A (rs2032582), and 3435C > T (rs1045642) [12,13]. In addition, another example of the implication of pharmacogenetics in nephrology constitutes the thiopurine S-methyltransferase (TPMT) gene [14]. Many lines of evidence have reported that genetic variants located in the TPMT gene affect AZA metabolism and patients with low activity (10% prevalence) or absent activity (0.3% prevalence) are at risk of myelosuppression [15,16]. Among 20 variant alleles (TPMT *2-*18) identified to date, mutant alleles TPMT*2 and TPMT*3 explain more than 95% of defective gene activity [8,17].
“Adjusting” the dose of such drugs to the specific requirements of each patient to minimize toxicity while maintaining efficacy is a challenge in clinical nephrology. In an effort to provide the most comprehensive overview regarding the genetic contribution of pharmacogenes to the response to treatment of nephrology patients, we performed a systematic review and meta-analysis of available pharmacogenetic studies that included patients with CKD regardless of the primary cause of the disease.

2. Results

A systematic review of the literature in the PubMed database identified 492 articles. After extensive study, 29 articles were included in the meta-analysis. Figure 1 shows the reasons for excluding articles. In total, 11 genes (ABCB1, CYP2C9, CYP2C19, CYP3A5, IL-6, IL-10, ITPA, MIF, TGFB1, TNF, TPMT) and 16 polymorphisms located in these genes were studied.
The characteristics of each study are listed in Table 1. The studies were conducted in various populations of different racial descent: 11 studies involved Caucasians, 14 studies recruited Asians, and 4 studies were conducted in ethnically mixed populations. Among the 29 studies, 18 studies included patients with renal transplantation, 8 recruited patients with nephrotic syndrome, and 3 studies included patients with lupus nephritis.
In total, 16 genetic polymorphisms were examined in two or more studies and, therefore, were meta-analyzed. Table 2, Table 3, Table 4, Table 5, Table 6 and Table 7 list the results of the meta-analyses that are indicative of the association of the respective polymorphism with the risk of side effects or non-response to medication in patients with CKD after calculating the odds ratio (OR) per genetic model.
More specifically, with regard to the ABCB1 gene and the three polymorphisms harbored in it, the ABCB1 1236 C > T polymorphism was statistically significant in the studies with prednisolone (PRE) and mycophenolate (MMF). The ABCB1 2677 G > T polymorphism was also statistically significant in the analyses for PRE, whereas the ABCB1 3435 C > T polymorphism was statistically significant in the analyses for MMF and cyclosporine (CsA).
Regarding the genes encoding interleukins, the IL-10 -592 C > A polymorphism in all genetic models and --819 C > T in the dominant and the additive model in the CsA analyses were statistically significant. Another statistically significant polymorphism was the ITPA 94 C > A polymorphism in the recessive model in azathioprine (AZA) analyses. In addition, a statistically significant polymorphism was the MIF -173 G > C polymorphism in PRE analyses in all genetic models. Statistically significant results were also obtained for the TNF-308 G > A polymorphism in the recessive and additive models in PRE analyses.
Regarding heterogeneity control, statistically significant heterogeneity was observed among the studies regarding the CYP2C19*2 polymorphism in the main analysis for cyclophosphamide (CYC): for the TPMT 1 vs. polymorphism, 3C, MIF -173 G > C, Il-6 C-174G for PRE; for TPMT 1 vs. polymorphisms, 3C, ABCB1 1236 C > T, 2677 G > T, for CsA; for TPMT 1 vs. polymorphism 3C for AZA. For tacrolimus (TAC), a statistically significant heterogeneity was observed for polymorphisms ABCB1 2677 G > T and 3435C > T. Due to the statistically significant heterogeneity, the above results should be interpreted with caution, the majority of which are non-statistically significant.
On the existence of a difference in the estimated magnitude of genetic effects in large and small studies (or publication bias), which was assessed using the Egger test for funnel plot asymmetry and the Begg–Mazumdar test based on Kendall’s tau, the test was feasible in meta-analyses involving more than three studies. A statistically significant difference was observed between the MIF -173 G > C polymorphism studies in the PRE analysis.

3. Discussion

The present systematic review and meta-analysis provides the first comprehensive overview of pharmacogenetics studies in CKD regardless of the primary cause of the disease or the treatment. Although the term CKD is a very broad term, only 29 studies were included in the meta-analysis since many studies referred to pharmacokinetics without extractable genetic data. In total, 16 gene polymorphisms located in 11 different genes that were examined in 29 studies were included in the meta-analysis. The key finding of our meta-analysis was that variants ABCB1 (1236 C > T, 2677 G > T, 3435 C > T), IL-10 (-592 C > A, -819 C > T), ITPA (94 C > A), MIF (-173 G > C), and TNF (-308 G > A) gave significant results, suggesting the contribution of these loci to different responses to treatment in patients with CKD.
However, only TPMT has been included in the table of pharmacogenetics biomarkers in drug labeling of the U.S. Food and Drug administration (FDA) for the treatment of AZA [47]. More specifically, homozygous TPMT-deficient patients experience severe myelosuppression. For the other variants, the results are not so robust.
Most studies in the present systematic review are included in the meta-analysis of ABCB1 variants [25,26,29,33,34,35,37,38,39,41,45]. These studies included a variety of treatments such as PRE, steroids, CsA, TAC, AZA, sirolimus (SIR), and MMF. It is noteworthy to be mentioned that no study with biologicals was included in the meta-analysis. Regarding calcineurin inhibitors, the effects of ABCB1 3435C > T, 1236C > T, and 2677G > T/A SNPs on the pharmacokinetics of CsA and TAC remain uncertain, with conflicting results. Genetic linkage between these three genotypes suggests that the pharmacokinetic effects are complex and unrelated to any ABCB1 polymorphism. In contrast, it is possible that these polymorphisms may exert a small but combined effect. Any effect is likely to be in addition to the effects of CYP3A5 6986A > G SNP [12].
With regard to the CYP3A5 6986A > G variant, eight studies [23,25,34,36,40,41,44,45] included patients under treatment with pulse CYC, steroids, calcineurin inhibitors, and AZA/SIR. In contrast to CsA, a strong relationship between the CYP3A5 6986A > G SNP and TAC pharmacokinetics was demonstrated in kidney, heart, and liver transplant recipients, as well as in healthy volunteers [12]. Several recent studies have reported an approximate halving of the TAC C0/dose and doubling of the tacrolimus dose requirements in CYP3A5 expressers compared to that in CYP3A5 non-expressers [43,44,48,49,50,51,52].
However, studies with a small number of patients may be responsible for many conflicting results to date. The low frequency of some alleles, such as CYP3A4*1B allele, may not have been sufficient in many cases to detect a difference. In addition, the influence of ethnicity may play a role, as mutated genotypes are often more common in specific ethnic groups. However, even in the same ethnic group, for example in Caucasians, the frequencies of the studied polymorphisms differ. For instance, Caucasians present a minor allelic frequency around 50% regarding the ABCB1 1236C > T polymorphism, whereas the studied TPMT allele frequency polymorphisms range from 0.2–5.5% in Caucasians. Although the genotype itself, rather than the underlying ethnicity, should theoretically detect any differences, it is possible that indeterminate genetic differences (for example, co-inherited SNPs) among Africans, Caucasians, and Asians contribute to significant variables. In addition, the associations presented in these meta-analyses resulted from pooling a relatively small number of studies and patients with large heterogeneity between studies. Furthermore, the impact of effect modifiers such as age and the pre-treatment cytogenetic and molecular genetic findings was not considered as the individual studies did not provide the relevant data. Indeed, we have not included the analyses of interactions of age and comorbidity in the meta-analysis because these details were not included in the available data. It would be very interesting if future pharmacogenetic studies included this type of data in the analysis. The present systematic review and meta-analysis included studies that varied in terms of treatment and primary cause of CKD, as well as racial descent. Thus, the results should be interpreted with caution. Future studies with more homogenous studies will shed light on the pharmacogenetics in CKD. Thus, lack of significant association in the remaining gene variants does not exclude the possibility of an association.
Last but not least, epigenetic changes in drug metabolizing enzymes, nuclear receptors, and transporters are associated with individual drug responses and acquired multidrug resistance [53]. Consequently, pharmacoepigenetics could provide an explanation for why patients with the same genotype respond differently to therapy with a specific medication. Unrelated to epigenetics, inflammation can significantly influence the extent of CYP suppression, thus contributing to intra- and interindividual variability to drug exposure [54].

4. Materials and Methods

In order to clarify the contribution of the genetic background of CKD patients to the response to medications, a systematic review and meta-analysis of the pharmacogenetic studies reported in CKD patients was performed. The meta-analysis included studies published in English that are indexed in the PubMed database after a search with the terms (“pharmacogenetics” or “pharmacogenomics” or “response” or adverse effects” or “polymorphism” or “treatment”) AND (chronic kidney disease or nephrology or nephropathy or “kidney disease” or “glomerulonephritis”), accessed on 3 August 2020. In addition, all the references cited in the studies as well as the published meta-analyses that are relevant to the topic were also reviewed for any studies not indexed in PubMed. Unpublished data were not requested from any author.
The inclusion criteria that studies had to meet were: (a) included patients with CKD who did not respond to treatment or patients with CKD who had side effects due to medication (non-responders); (b) included patients with CKD who responded to treatment or patients with CKD who had no side effects due to medication (responders); (c) provided complete genotypic data by genotype for both responders to treatment and non-responders or allele frequencies, excluding studies that presented merged genotypic data.
Case reports, editorials, review articles, and publications with other study designs, such as family-based studies, were excluded. In studies with overlap, the most recent and largest study with data was included in the meta-analysis. Only studies using validated genotyping methods were considered. The eligibility of the studies was assessed independently by two researchers, the results were compared and any disagreement was resolved.
From each study, the following information was extracted: first author, year of publication, nationality of the study population, demographics, sample matching, and genotypic data of respondents and non-responders.
The association between genotype distribution and response to medication was examined using the dominant, recessive, and additive inheritance models. For all associations, the odds ratios (OR) with the corresponding 95% confidence intervals (CI) were recorded. A pooled OR was calculated based on the individual ORs. The threshold for meta-analysis was two studies per polymorphism. The pooled OR was calculated using fixed effects (FE) (Mantel–Haenszel) and random effects (RE) (DerSimonian and Laird) models. The random effects model assumes a genuine diversity in the results of the various studies and incorporates it into the variance calculations between studies. Heterogeneity between studies was tested using Cochran’s Q statistic (considered statistically significant at p < 0.10). Heterogeneity was quantified by measuring I2 (I2 = (Q − df)/Q), which is independent of the number of studies included in the meta-analysis. We also tested for small study effects with the Egger test and the Begg–Mazumdar test based on Kendall’s tau. Cumulative meta-analysis and retrospective meta-analysis were performed for each polymorphism to assess the trend of pooled OR over time.
For each study, we examined whether controls confronted with Hardy–Weinberg equilibrium (HWE) predicted genotypes using Fisher’s exact test. Finally, subgroup analyzes were performed based on ethnicity.

5. Conclusions

In conclusion, there is strong evidence that variants in the ABCB1, IL-10, ITPA, MIF, and TNF genes are related to poor response and/or adverse drug reactions in patients with CKD. Future studies would be required to confirm the results of the present meta-analysis, and an appropriate computer program could help guide the selection of the best drugs and doses.

Author Contributions

Conceptualization, T.C.T. and I.S.; methodology, I.S.; software, M.T.; validation, G.P., T.E., and I.S.; formal analysis, M.T.; investigation, G.R.; resources, G.R.; data curation, M.T.; writing—original draft preparation, M.T.; writing—review and editing, T.C.T. and I.S.; visualization, M.T.; supervision, I.S.; project administration, C.C.; funding acquisition, E.D. All authors have read and agreed to the published version of the manuscript.

Funding

The research is co-financed by the European Regional Development Fund (ERDF) under the Operational Program “Epirus 2014–2020”, NSRF 2014–2020, in the frame of the program “e-health drug interaction control platform and personalized medication in patients with CKD”, code MIS 5033138.

Conflicts of Interest

The authors declare no conflict of interest.

Abbreviations

Chronic kidney diseaseCKD
Kidney Disease Outcomes Quality InitiativeKDOQI
Mammalian target of rapamycin inhibitorsmTORs
CyclosporineCsA
TacrolimusTAC
SirolimusSIR
AzathioprineAZA
Mycophenolic acidMPA
MycophenolateMMF
ATP binding cassette subfamily B member 1ABCB1
cytochrome P450 family 2 subfamily C member 9CYP2C9
cytochrome P450 family 2 subfamily C member 19CYP2C19
cytochrome P450 family 3 subfamily A member 5CYP3A5
interleukin 6IL-6
interleukin 10IL-10
inosine triphosphataseITPA
macrophage migration inhibitory factorMIF
transforming growth factor beta 1TGFB1
tumor necrosis factorTNF
thiopurine S-methyltransferaseTPMT

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Figure 1. Flowchart of retrieved studies with reasons for exclusion.
Figure 1. Flowchart of retrieved studies with reasons for exclusion.
Ijms 22 04480 g001
Table 1. Demographic characteristics of included studies.
Table 1. Demographic characteristics of included studies.
Author (Year of Publication)EthnicityDrugPhenotype or TraitGenePolymorphism (Rs Number)NSelection Criteria of Non-RespondersRespondersNSelection Criteria of Responders
Xiong, 2010 [18]East AsiansAZAKidney transplant recipientsITPA94C > A (rs1127354)35Hematotoxicity and/or hepatotoxicity and/or GI toxicity and/or flu-like symptomsRenal transplants, AZA treatment present or previously120No adverse drug reactions
Kurzawski, 2009 [19]CaucasiansAZARenal transplant recipientsTPMT*1 vs. *2,*3A,*3C108Leucopenia and/or HepatotoxicityRenal transplants, AZA treatment previously48No adverse drug reactions
ITPA94C > A (rs1127354)
Wang, 2008 [20]CaucasiansTAC, MMF, PREKidney transplant recipients (no antiviral, anticancer, or other leucopenia-causing medication)IMPDH1898G > A60LeucopeniaRenal transplants129No adverse drug reactions
IMPDH1rs2288550
IMPDH11552G > A
Xin, 2009 [21]East AsiansAZA, CsA, PRERenal transplant recipientsTPMT*1 vs. *3C30Hematotoxicity and/or hepatotoxicityRenal transplants120No adverse drug reactions
Vannaprasaht, 2009 [22]AsiansAZA, PRE, CNIsKidney transplant recipientsTPMT*1 vs. *3C22MyelosuppressionRenal transplants117No adverse drug reactions
Takada, 2004 [23]Caucasianspulse cyclophosphamideLupus nephritisCYP2C19CYP2C19*2 (rs4244285)28Development of premature ovarian failurePatients with lupus nephritis20No adverse drug reactions
CYP2C9CYP2C9*2 (rs1799853)
CYP3A5CYP3A5*3 (rs776746)
Ngamjanyaporn, 2011 [24]AsianscyclophosphamideSLECYP2C19*1 vs. *2 (rs4244285)36Ovarian toxicityPatients with systemic lupus erythematosus35No adverse drug reactions
Chiou, 2012 [25]AsiansPREIdiopathic NSCYP3A56986A > G (rs776746)16Steroid resistant NSPatients with NS58Steroid sensitive NS
ABCB1C1236T (rs1128503)
ABCB1G2677T (rs2032582)
ABCB1G2677A (rs2032582)
ABCB1C3435T (rs1045642)
Youssef, 2013 [26]MixedPREIdiopathic NSABCB1C1236T (rs1128503)46Steroid non-respondersPatients with INS92Steroid responders
ABCB1G2677T/A (rs2032582)
ABCB1C3435T (rs1045642)
Sadeghi-Bojd, 2019 [27]AsianssteroidsIdiopathic NSMIF-173G > C (rs755622)27Steroid resistantPatients with NS107Steroid responders
Luo, 2013 [28]East AsiansCsAGingival overgrowth in renal transplant recipientsIL-10-1082A > G122With gingival overgrowthRenal transplants80Without gingival overgrowth
IL-10-819C > T
IL-10-592C > A
Choi, 2011 [29]East AsianssteroidsIdiopathic NSABCB11236C > T (rs1128503)69Steroid non-respondersPatients with NS101Steroid responders
ABCB12677G > T (rs2032582)
ABCB12677G > A (rs2032582)
ABCB13435C > T (rs1045642)
MIFG-173C (rs755622)
Berdeli, 2005 [30]MixedsteroidsIdiopathic NSMIFG-173C (rs755622)77Steroid non-respondersPatients with NS137Steroid responders
Swierczewska, 2014 [31]CaucasianssteroidsIdiopathic NSMIFG-173C (rs755622)41Steroid non-respondersPatients with NS30Steroid responders
Babel, 2004 [32]CaucasiansCsA+
TAC/PRE and ATG/anti-IL-2R antibody
Long-term renal transplantsIL10A-1082G (rs1800896)51Type 2/steroid-induced DMRenal transplants207No adverse drug reactions
TNFaA-308G (rs1800629)
IL-6C-174G
TGFB1 10C > T
Singh, 2011 [33]AsiansCsARejection episodes in renal transplant recipientsABCB11236 C > T (rs1128503)49Rejection episodesRenal transplants176No rejection episodes
CsAABCB12677 G > T (rs2032582)72176
CsAABCB13435 C > T (rs1045642)70176
TACABCB11236 C > T (rs1128503)4629
TACABCB12677 G > T (rs2032582)4629
TACABCB13435 C > T (rs1045642)
Santoro, 2011 [34]MixedCsA and AZA/SRL or TAC and AZA/SRLRenal transplant patientsCYP3A5CYP3A5*3 (rs776746)15Biopsy-proven rejection episodesRenal transplants138No biopsy-proven rejection episodes
ABCB11236 C > T (rs1128503)13915
ABCB12677 G > T (rs2032582)12915
ABCB13435 C > T (rs1045642)14015
Glowacki, 2011 [35]CaucasiansTACAcute tubular necrosis/TAC tubular or vascular toxicity after renal transplantationABCB13435 C > T (rs1045642)16Acute tubular necrosis/TAC tubular or vascular toxicityRenal transplants187No acute tubular necrosis/TAC tubular or vascular toxicity
Kuypers, 2010 [36]Caucasianscalcineurin inhibitorCalcineurin inhibitor-associated nephrotoxicity in renal allograft recipientsCYP3A5CYP3A5*3 (rs776746)51Calcineurin inhibitor-associated nephrotoxicityRenal allograft recipients253
Miura, 2008 [37]East AsiansPRE and TAC and MMFAcute rejection in renal transplant recipientsABCB11236 C > T (rs1128503)43Acute rejectionRenal transplants52No acute rejection
ABCB12677 G > T (rs2032582)
ABCB12677 G > A (rs2032582)
ABCB13435 C > T (rs1045642)
Grinyo, 2008 [38]CaucasiansCsA and MMFAcute rejection after kidney transplantationABCB13435 C > T (rs1045642)77Biopsy-proven acute rejectionRenal transplants160No biopsy-proven acute rejection
ABCB11236 C > T (rs1128503)
ABCB12677 G > T (rs2032582)
ABCB12677 G > A (rs2032582)
IMPDH1G1320A
IL-10C-592A (rs1800872)
IL-10A-1082G (rs1800896)
IL-10C-819T (rs3021097)
TGF-b1C869T (rs1800470)
Von Ahsen, 2001 [39]CaucasiansCsARejection episodes in stable renal transplant recipientsABCB13435 C > T (rs1045642)47RejectionRenal transplants77No rejection
Quteineh, 2008 [40]CaucasiansTACDelayed allograft function in renal graft recipientsCYP3A5CYP3A5*3 (rs776746)77Delayed graft functionRenal transplants59No delayed graft function
Qiu, 2008 [41]East AsiansCsARejection episodes in renal transplant recipientsABCB11236 C > T (rs1128503)6RejectionRenal transplants97No rejection
ABCB12677 G > T/A (rs2032582)697
ABCB13435 C > T (rs1045642)697
CYP3A5CYP3A5*3 (rs776746)697
Kagaya, 2010 [42]AsiansMMFSubclinical acute rejection after renal transplantationIMPDHrs227829321Subclinical acute rejection 61No subclinical acute rejection
IMPDHrs2278294
Kurzawski, 2005 [43]CaucasiansAZAAZA-induced myelotoxicity in renal transplant recipientsTPMT*1 vs. *2,*3A,*3C67AZA-induced myelotoxicityRenal transplants113No adverse drug reactions
Kumaraswami, 2017 [44]AsianscyclophosphamideLupus nephritisCYP2C19CYP2C19*2 (rs4244285)24No responseLupus nephritis patients123Complete and partial response
CYP2C9CYP2C9*2 (rs1799853)
CYP3A5CYP3A5*3 (rs776746)
Moussa, 2017 [45]MixedsteroidsPediatric idiopathic nephrotic syndromeABCB1C1236T (rs1128503)10Steroid non-respondersIdiopathic nephrotic syndrome53Steroid responders
ABCB1G2677A
ABCB1C3435T (rs1045642)
CYP3A5CYP3A5*3 (rs776746)
Tripathi, 2008 [46]AsiansglucocorticoidsIdiopathic nephrotic syndromeTNF-αA-308G (rs1800629)35Steroid resistantIdiopathic nephrotic syndrome115Steroid sensitive
IL-6G174C (rs1800795)
Table 2. Meta-analysis results regarding pulse cyclophosphamide.
Table 2. Meta-analysis results regarding pulse cyclophosphamide.
DrugGenePolymorphismRs NumberN of StudiesOR with 95% CI Fixed EffectsOR with 95% CI Random EffectsI2 (%)p-Value for QEgger Test p-ValueBegg–Mazumdar p-Value
Pulse cyclophosphamideCYP2C9CYP2C9*2 rs17998532
All
Dominant 1.24 (0.20–7.90)1.24 (0.20–7.90)00.41--
Recessive 1.89 (0.11–32.69)1.89 (0.11–32.69)00.52
Additive 1.93 (0.11–33.45)1.93 (0.11–33.45)00.54
Pulse cyclophosphamideCYP2C19CYP2C19*2 (G681A) rs42442853
All
Dominant 1.07 (0.60–1.90)0.81 (0.17–3.90)860.001--
Recessive 1.25 (0.34–4.63)1.25 (0.34–4.63)00.89
Additive 1.36 (0.34–5.36)1.36 (0.34–5.36)00.48
Caucasians 1 --
Asians 2
Dominant 1.88 (0.98–3.60)1.88 (0.98–3.60)00.50--
Recessive 1.46 (0.33–3.67)1.46 (0.33–3.67)00.84
Additive 2.06 (0.44–9.58)2.06 (0.44–9.58)00.94
 
Pulse cyclophosphamideCYP3A5CYP3A5*3 rs776746
All 2
Dominant 0.67 (0.30–1.48)0.67 (0.30–1.48)0%0.54--
Recessive 0.90 (0.30–2.68)0.90 (0.30–2.68)0%0.58--
Additive 0.73 (0.17–3.08)0.73 (0.17–3.08)0%0.32--
Table 3. Meta-analysis results regarding prednisolone.
Table 3. Meta-analysis results regarding prednisolone.
DrugGenePolymorphismRs NumberN of StudiesOR with 95% CI Fixed EffectsOR with 95% CI Random EffectsI2 (%)p-Value for QEgger Test p-ValueBegg–Mazumdar p-Value
Prednizolone
AllTPMT*1 vs. *3C 2
Dominant 0.49 (0.18–1.37)0.64 (0.01–50.02)94.4%<0.0001--
Recessive 4 (0.08–202.85)4 (0.08–202.85)0%>0.9999--
Additive 4.5 (0.09–228.51)4.5 (0.09–228.51)0%>0.9999--
 
AllCYP3A5CYP3A5*3rs7767462
Dominant 2.38 (0.41–13.67)2.38 (0.41–13.67)0%0.84--
Recessive 2.54 (1.03–6.22)2.54 (1.03–6.22)0%0.73--
Additive 3.24 (0.54–19.51)3.24 (0.54–19.51)0%0.80--
AllABCB1C3435Trs10456429
Dominant 0.86 (0.63–1.18)0.86 (0.63–1.18)0%0.610.620.48
Recessive 1.21 (0.86–1.70)1.21 (0.86–1.70)0%0.760.720.76
Additive 0.97 (0.64–1.48)0.97 (0.64–1.48)0%0.950.310.61
CaucasiansABCB1C3435Trs10456422
Dominant 1.02 (0.28–3.68)1.05 (0.26–4.28)14.7%0.28--
Recessive 2.02 (0.82–4.96)2.05 (0.73–5.75)23.6%0.25--
Additive 1.84 (0.46–7.32)1.84 (0.46–7.32)0%0.68--
AsiansABCB1C3435Trs10456425
Dominant 0.89 (0.62–1.28)0.89 (0.62–1.28)0%0.830.240.48
Recessive 1.07 (0.66–1.75)1.07 (0.66–1.75)0%0.860.820.48
Additive 1.01 (0.59–1.74)1.01 (0.59–1.74)0%0.990.790.82
MixedABCB1C3435Trs10456422
Dominant 0.75 (0.39–1.44)0.66 (0.19–2.31)70.6%0.07--
Recessive 1.17 (0.68–2.02)1.17 (0.68–2.02)0%0.36--
Additive 0.76 (0.37–1.59)0.76 (0.36–1.61)3.8%0.31--
AllABCB1C1236Trs11285039
Dominant 1.29 (0.91–1.84)1.31 (0.90–1.89)5%0.390.620.36
Recessive 1.70 (1.22–2.38)1.62 (1.10–2.40)20.4%0.260.090.26
Additive 1.63 (1.01–2.64)1.62 (0.95–2.76)14%0.320.720.76
CaucasiansABCB1C1236Trs11285032
Dominant 0.56 (0.21–1.52)0.56 (0.21–1.52)0%0.38--
Recessive 0.94 (0.33–2.63)0.94 (0.33–2.63)0%0.65--
Additive 0.63 (0.18–2.22)0.63 (0.18–2.22)0%0.42--
AsiansABCB1C1236Trs11285035
Dominant 1.42 (0.91–2.21)1.48 (0.90–2.43)7.6%0.360.270.82
Recessive 1.69 (1.11–2.60)1.58 (0.88–2.83)37.1%0.170.460.48
Additive 1.90 (1.02–3.53)1.92 (0.88–4.19)27.2%0.240.940.82
MixedABCB1C1236Trs11285032
Dominant 1.55 (0.79–3.05)1.55 (0.79–3.05)0%0.68--
Recessive 2.17 (1.14–4.12)2.06 (0.88–4.81)39.3%0.20--
Additive 1.97 (0.76–5.12)1.97 (0.76–5.12)0%0.46--
PrednizoloneABCB1G2677Trs20325825
All
Dominant 1.08 (0.60–1.93)1.08 (0.60–1.93)0%0.830.430.23
Recessive 1.16 (0.67–2.01)1.11 (0.48–2.57)53.8%0.070.720.08
Additive 1.34 (0.66–2.71)1.34 (0.66–2.71)0%0.730.760.48
CaucasiansABCB1G2677Trs20325822
Dominant 1.42 (0.36–5.62)1.42 (0.36–5.62)0%0.57--
Recessive 0.64 (0.24–1.70)0.62 (0.15–2.61)53.5%0.14--
Additive 0.89 (0.19–4.14)0.91 (0.16–5.23)22.3%0.26--
AsiansABCB1G2677Trs20325823
Dominant 1.01 (0.53–1.93)1.01 (0.53–1.93)0%0.63--
Recessive 1.53 (0.78–3.00)1.57 (0.55–4.47)54.6%0.11--
Additive 1.49 (0.67–3.30)1.49 (0.67–3.30)0%0.82--
PrednizoloneABCB1G2677Ars2032582
All 5
Dominant 1.21 (0.62–2.37)1.30 (0.59–2.84)21.1%0.280.160.08
Recessive 1.64 (0.60–4.47)1.64 (0.60–4.47)0%0.680.480.82
Additive 1.22 (0.38–3.91)1.22 (0.38–3.91)0%0.550.230.23
CaucasiansABCB1G2677Ars20325821
Asians 4
Dominant 1.07 (0.54–2.14)1.08 (0.53–2.18)2.9%0.380.500.75
Recessive 1.39 (0.48–4.01)1.39 (0.48–4.01)0%0.700.900.75
Additive 0.91 (0.26–3.13)0.91 (0.26–3.13)0%0.760.490.33
 
PrednizoloneMIF−173 G > Crs755622
All 4
Dominant 1.56 (1.09–2.24)1.28 (0.55–3.00)80.6%0.0010.16<0.0001
Recessive 2.90 (1.02–8.30)2.88 (0.68–12.16)45.3%0.140.910.75
Additive 2.98 (1.03–8.63)2.93 (0.54–15.99)59.4%0.060.920.75
 
PrednizoloneIL-6C-174Grs1800795
All 2
Dominant 0.82 (0.49–1.37)0.82 (0.49–1.37)0%0.69--
Recessive 0.80 (0.43–1.48)0.32 (0.02–4.28)82.8%0.02--
Additive 0.66 (0.31–1.40)0.31 (0.02–3.76)80.9%0.02--
 
PrednizoloneTNFG-308A
All 2
Dominant 0.82 (0.49–1.38)0.82 (0.49–1.38)0%0.35--
Recessive 0.12 (0.02–0.65)0.12 (0.02–0.65)0%0.38
Additive 0.12 (0.02–0.64)0.12 (0.02–0.64)0%0.38
Table 4. Meta-analysis results regarding MMF.
Table 4. Meta-analysis results regarding MMF.
DrugGenePolymorphismRs NumberN of StudiesOR with 95% CI Fixed EffectsOR with 95% CI Random EffectsI2 (%)p-Value for QEgger Test p-ValueBegg–Mazumdar p-Value
MMFABCB13435C > Trs1045642
All 2
Dominant 2.07 (1.09–3.94)2.07 (1.09–3.94)0%0.41--
Recessive 1.43 (0.81–2.54)1.27 (0.52–3.09)46.3%0.17--
Additive 2.25 (1.05–4.84)1.99 (0.64–6.22)47.2%0.17--
MMFABCB11236C > Trs1128503
All 2
Dominant 1.67 (0.93–3.00)1.67 (0.93–3.00)0%0.51--
Recessive 1.89 (1.05–3.40)1.63 (0.52–5.11)70.2%0.07--
Additive 2.43 (1.17–5.04)2.13 (0.73–6.18)33.9%0.22--
MMFABCB12677G > Trs2032582
All 2
Dominant 2.20 (1.16–4.17)2.20 (1.16–4.17)0%0.81--
Recessive 1.79 (0.94–3.40)1.37 (0.36–5.18)66.2%0.09--
Additive 2.92 (1.32–6.46)2.77 (1.09–7.05)14%0.28--
MMFABCB12677G > Ars2032582
All 2
Dominant 3.72 (0.72–19.22)3.72 (0.72–19.22)0%0.50--
Recessive 3.04 (0.22–42.65)3.04 (0.22–42.65)0%0.75--
Additive 4.14 (0.28–61.96)4.14 (0.28–61.96)0%0.94--
Table 5. Meta-analysis results regarding cyclosporine.
Table 5. Meta-analysis results regarding cyclosporine.
DrugGenePolymorphismRs NumberN of StudiesOR with 95% CI Fixed EffectsOR with 95% CI Random EffectsI2 (%)p-Value for QEgger Test p-ValueBegg–Mazumdar p-Value
Cyclosporine (CsA)TPMT1 vs. 3C
All 2
Dominant 0.49 (0.18–1.37)0.64 (0.01–50.02)94.4%<0.0001--
Recessive 4 (0.08–202.85)4 (0.08–202.85)0%>0.9999--
Additive 4.5 (0.09–228.51)4.5 (0.09–228.51)0%>0.9999--
CsAIL10−1082A > G
All 3
Dominant 0.75 (0.49–1.14)0.76 (0.42–1.37)48.1%0.15--
Recessive 1.11 (0.70–1.77)1.11 (0.70–1.77)0%0.93--
Additive 1.04 (0.59–1.85)1.04 (0.59–1.85)0%0.59--
CsAIL10−819C > T
All 2
Dominant 1.72 (1.09–2.72)1.72 (1.09–2.72)0%0.33--
Recessive 1.90 (1.12–3.24)2.30 (0.82–6.40)61.9%0.11--
Additive 2.70 (1.43–5.10)2.70 (1.43–5.10)0%0.56--
CsAIL10−592C > A
All 2
Dominant 1.67 (1.07–2.60)1.67 (1.04–2.70)13.5%0.28--
Recessive 1.93 (1.16–3.22)2.17 (0.91–5.19)57.6%0.12--
Additive 2.79 (1.52–5.13)2.79 (1.52–5.13)0%0.49--
CsATGFB1C869T (P10L)
All 2
Dominant 0.80 (0.47–1.37)0.80 (0.47–1.37)0%0.67--
Recessive 0.68 (0.44–1.05)0.68 (0.44–1.05)0%0.49--
Additive 0.66 (0.36–1.19)0.66 (0.36–1.19)0%0.94--
CsAABCB11236C > Trs1128503
All 4
Dominant 0.91 (0.59–1.40)0.82 (0.32–2.14)71%0.020.880.75
Recessive 1.14 (0.72–1.80)1.00 (0.38–2.60)70.5%0.020.680.75
Additive 1.04 (0.60–1.80)0.91 (0.23–3.58)77.1%0.000.840.75
CsA
All 3
Dominant 0.88 (0.55–1.38)0.85 (0.24–3.01)85.7%0.001--
Recessive 1.03 (0.63–1.69)1.33 (0.31–5.80)83.7%0.00--
Additive 0.97 (0.54–1.75)1.32 (0.17–10.44)88.9%0.0001--
CsAABCB13435 C > Trs1045642
All 5
Dominant 1.02 (0.67–1.54)1.02 (0.55–1.90)50.6%0.090.940.48
Recessive 1.47 (1.01–2.16)1.47 (1.01–2.16)0%0.840.640.82
Additive 1.33 (0.81–2.18)1.37 (0.71–2.67)33.7%0.200.700.48
CsA
All 3
Dominant 0.44 (0.09–2.16)0.44 (0.09–2.16)0%0.999--
Recessive 0.98 (0.53–1.82)0.98 (0.53–1.82)0%0.78--
Additive 0.48 (0.09–2.40)0.48 (0.09–2.40)0%0.97--
Table 6. Meta-analysis results regarding azathioprine.
Table 6. Meta-analysis results regarding azathioprine.
DrugGenePolymorphismRs NumberN of StudiesOR with 95% CI Fixed EffectsOR with 95% CI Random EffectsI2 (%)p-Value for QEgger Test p-ValueBegg–Mazumdar p-Value
AzathioprineTPMT1 vs. 3C
All 4
Dominant 1.64 (0.83–3.26)2.14 (0.22–21.08)90.1%<0.00010.750.33
Recessive 2.33 (0.24–22.55)2.33 (0.24–22.55)0%0.990.80>0.9999
Additive 2.78 (0.29–26.75)2.78 (0.29–26.75)0%0.990.59>0.9999
AzathioprineITPA94C > Ars1127354
All 2
Dominant 1.60 (0.84–3.06)1.59 (0.81–3.14)8.6%0.30--
Recessive 21.82 (1.07–445.72)21.82 (1.07–445.72)0%>0.9999--
Additive 10.19 (0.92–113.39)10.19 (0.92–113.39)0%0.35--
Table 7. Meta-analysis results regarding tacrolimus.
Table 7. Meta-analysis results regarding tacrolimus.
DrugGenePolymorphismRs NumberN of StudiesOR with 95% CI Fixed EffectsOR with 95% CI Random EffectsI2 (%)p-Value for QEgger Test p-ValueBegg–Mazumdar p-Value
TacrolimusCYP3A5CYP3A5*3rs776746
All 3
Dominant 0.24 (0.08–0.69)0.24 (0.08–0.69)0%0.86--
Recessive 0.88 (0.53–1.46)0.88 (0.53–1.46)0%0.87--
Additive 0.25 (0.08–0.77)0.25 (0.08–0.77)0%0.91--
TacrolimusABCB11236C > Trs1128503
All 2
Dominant 1.53 (0.62–3.81)1.53 (0.62–3.81)0%0.54--
Recessive 1.08 (0.52–2.21)1.08 (0.52–2.21)0%0.54--
Additive 1.48 (0.54–4.10)1.48 (0.54–4.10)0%0.49--
TacrolimusABCB12677 G > Trs2032582
All 2
Dominant 0.44 (0.17–1.10)0.58 (0.07–4.61)77.3%0.04--
Recessive 0.46 (0.21–1.03)0.46 (0.21–1.03)0%0.66--
Additive 0.33 (0.12–0.91)0.40 (0.08–2.14)56%0.13--
TacrolimusABCB13435C > Trs1045642
All 3
Dominant 0.76 (0.43–1.34)0.66 (0.21–2.13)73.7%0.02--
Recessive 1.47 (0.83–2.59)1.24 (0.43–3.57)69.4%0.04--
Additive 1.06 (0.53–2.12)0.83 (0.20–3.47)74.2%0.02--
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Tziastoudi, M.; Pissas, G.; Raptis, G.; Cholevas, C.; Eleftheriadis, T.; Dounousi, E.; Stefanidis, I.; Theoharides, T.C. A Systematic Review and Meta-Analysis of Pharmacogenetic Studies in Patients with Chronic Kidney Disease. Int. J. Mol. Sci. 2021, 22, 4480. https://doi.org/10.3390/ijms22094480

AMA Style

Tziastoudi M, Pissas G, Raptis G, Cholevas C, Eleftheriadis T, Dounousi E, Stefanidis I, Theoharides TC. A Systematic Review and Meta-Analysis of Pharmacogenetic Studies in Patients with Chronic Kidney Disease. International Journal of Molecular Sciences. 2021; 22(9):4480. https://doi.org/10.3390/ijms22094480

Chicago/Turabian Style

Tziastoudi, Maria, Georgios Pissas, Georgios Raptis, Christos Cholevas, Theodoros Eleftheriadis, Evangelia Dounousi, Ioannis Stefanidis, and Theoharis C. Theoharides. 2021. "A Systematic Review and Meta-Analysis of Pharmacogenetic Studies in Patients with Chronic Kidney Disease" International Journal of Molecular Sciences 22, no. 9: 4480. https://doi.org/10.3390/ijms22094480

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