Next Article in Journal
Neighbor Preferences of Amino Acids and Context-Dependent Effects of Amino Acid Substitutions in Human, Mouse, and Dog
Previous Article in Journal
Therapeutic Effects of Melatonin Receptor Agonists on Sleep and Comorbid Disorders
Open AccessArticle

ESTs Analysis of Putative Genes Engaged in Polyporus umbellatus Sclerotial Development

Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100193, China
*
Author to whom correspondence should be addressed.
Int. J. Mol. Sci. 2014, 15(9), 15951-15962; https://doi.org/10.3390/ijms150915951
Received: 27 July 2014 / Revised: 13 August 2014 / Accepted: 2 September 2014 / Published: 10 September 2014
(This article belongs to the Section Biochemistry)
Polyporus umbellatus is one of the most widely used and precious medicinal fungi and the underground sclerotia are known to be with great medicinal value. However, the molecular mechanisms involved in sclerotial development are poorly understood. In the present study, we constructed a forward suppression subtractive hybridization (SSH) cDNA library of Polyporus umbellatus to identify genes expressing differently between mycelium and sclerotia. In this library, a total of 1202 clones were sequenced, assembled into 222 contigs and 524 singletons which were further searched against the NCBI nonredundant (NR) protein database (E-value cutoff, 10−5). Based on sequence similarity with known proteins, 378 sequences between mycelium and sclerotial were identified and classified into different functional categories through Gene Ontology (GO), Clusters of orthologous Groups of proteins (COGs). We have finally identified a majority of differentially expressed genes (constituting 5.6% of the present library) between the two different periods. An expression level of 32 selected expressed sequence tags (ESTs) generated from the above SSH cDNA library was studied through RT-PCR. This study provides the first global overview of genes putatively involved in Polyporus umbellatus sclerotial development and provides a preliminary basis for further functional research in terms of regulated gene expression in sclerotial production. View Full-Text
Keywords: Polyporus umbellatus; sclerotia; suppression subtractive hybridization (SSH) cDNA library; sequence analysis; real-time qPCR assay Polyporus umbellatus; sclerotia; suppression subtractive hybridization (SSH) cDNA library; sequence analysis; real-time qPCR assay
Show Figures

Graphical abstract

MDPI and ACS Style

Song, C.; Liu, M.; Xing, Y.; Guo, S. ESTs Analysis of Putative Genes Engaged in Polyporus umbellatus Sclerotial Development. Int. J. Mol. Sci. 2014, 15, 15951-15962. https://doi.org/10.3390/ijms150915951

AMA Style

Song C, Liu M, Xing Y, Guo S. ESTs Analysis of Putative Genes Engaged in Polyporus umbellatus Sclerotial Development. International Journal of Molecular Sciences. 2014; 15(9):15951-15962. https://doi.org/10.3390/ijms150915951

Chicago/Turabian Style

Song, Chao; Liu, Mengmeng; Xing, Yongmei; Guo, Shunxing. 2014. "ESTs Analysis of Putative Genes Engaged in Polyporus umbellatus Sclerotial Development" Int. J. Mol. Sci. 15, no. 9: 15951-15962. https://doi.org/10.3390/ijms150915951

Find Other Styles

Article Access Map by Country/Region

1
Only visits after 24 November 2015 are recorded.
Search more from Scilit
 
Search
Back to TopTop