An Unstructured Phylogeographic Pattern with Extensive Gene Flow in an Endemic Bird of South China: Collared Finchbill (Spizixos semitorques)
Abstract
:1. Introduction
2. Results and Discussion
2.1. Results
2.2. Discussion
Demographic History
3. Materials and Methods
3.1. Sample Collection, DNA Extraction, Amplification and Sequencing
3.2. Sequence Analysis
4. Conclusions
Acknowledgements
References
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S. s. semitorques | S. s. cinereicapillus | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Statistics | GSWX | SXFP | SCGY | SCYA | SNJ | JXJGS | HNYJ | GZGD | AHJX | FJ | TAIPEI |
Tajima’s D | −0.933 | −1.633 | −0.109 | −0.7064 | −0.996 | −0.694 | −0.591 | −0.691 | −0.986 | −1.199 | −0.894 |
P | NS | NS | NS | NS | NS | NS | NS | NS | NS | NS | NS |
Fu’s Fs | −4.843 | −12.75 | −1.283 | −3.336 | −2.752 | −1.908 | −5.719 | −6.401 | −2.764 | −1.554 | −1.633 |
P | <0.01 | 0.00 | NS | NS | NS | NS | NS | NS | NS | NS | NS |
Fu and Li’s D | −1.313 | −2.803 | −0.109 | −0.640 | −1.270 | −0.798 | −0.765 | −1.360 | −1.370 | −1.199 | −0.894 |
P | NS | < 0.05 | NS | NS | NS | NS | < 0.01 | < 0.01 | NS | NS | NS |
Group | Among groups (AG) | Among populations within groups(AP) | Within populations (WP) | Percentage of variation |
---|---|---|---|---|
FCT | FSC | FST | ||
2 Groups S. s. semitorques (mainland sites): S. s. cinereicapillus (TAIPEI) | 0.5043 | 0.0098 | 0.5092 | Among groups:50.44 Among populations within group: 0.49 Within populations: 49.08 |
6 Groups East(AHJX, JSNJ): West(SCYA, SCGY): Southeast(FJ): Southwest(GZGD, GXJZS): Central (JXJGS, HNYJ, HNWG, SNJ): Northwest(GSWX, SXFP) | 0.0029 | 0.0067 | 0.0096 | Among groups: 0.29 Among populations within group: 0.67 Within populations: 99.04 |
Subspecies | Localities | Latitude | Longitude | Sample size | Haplotype numbers | Nucleotide diversity (π) | Haplotype diversity (Hd) |
---|---|---|---|---|---|---|---|
S. s. semitorques | GSWX | 32°56′37.74″ | 104°41′0.16″ | 9 | 1/13/14/15/16/17/18/19/21 | 0.00236 | 1.000 |
SXFP | 33°11′24.0″ | 108°12′0.0″ | 25 | 1/11/14/20/24/26/27/28/29/30/31/32/33/34/35/36/38/49/50/51 | 0.00231 | 0.980 | |
SCGY | 32°25′44.51″ | 105°54′4.61″ | 5 | 7/8/9/10/12 | 0.00243 | 1.000 | |
SCYA | 29°35′24.0″ | 102°35′24.0″ | 10 | 14/35/52/56/57/58/59/60/62 | 0.00252 | 0.978 | |
SNJ | 31°24′35.6″ | 110°33′18.5″ | 11 | 2/3/4/5/6/37/45/55/61 | 0.00236 | 0.964 | |
HNYJ | 28°55′53.0″ | 112°17′39.7″ | 10 | 22/24/25/42/43/44/46/47/48 | 0.00240 | 0.978 | |
HNWG | 26°25′48.0″ | 110°22′12.0″ | 3 | 15/23/24 | 0.00187 | 1.000 | |
GZGD | 26°35′4.96″ | 107°14′3.46″ | 10 | 1/15/49/68/69/70/71/72/73/ | 74 0.00245 | 1.000 | |
GXJZS | 24°39′59.36″ | 104°52′17.8″ | 2 | 37/67 | 0.00187 | 1.000 | |
JXJGS | 26°32′38.44″ | 114°8′50.45″ | 12 | 24/75/76/77/78/79/80/81/82/83/84 | 0.00195 | 0.985 | |
JSNJ | 32°1′48.00″ | 118°27′36.0″ | 4 | 53/54/56/57 | 0.00210 | 1.000 | |
AHJX | 30°4′15.12″ | 118°35′44.45″ | 9 | 15/63/64/65/66 | 0.00132 | 0.786 | |
FJ | 27°19′54.86″ | 118°7′13.85″ | 5 | 15/39/40/41/70 | 0.00205 | 1.000 | |
S. s. cinereicapillus | TAIPEI | 24°54′56.56″ | 121°40′26.17″ | 5 | 85/86/87/88/89 | 0.00196 | 1.000 |
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Gao, B.; Yu, L.; Qu, Y.; Song, G.; Dai, C.; Zhang, R.; Yin, Z.; Wang, K.; Gao, X.; Li, S.-H.; et al. An Unstructured Phylogeographic Pattern with Extensive Gene Flow in an Endemic Bird of South China: Collared Finchbill (Spizixos semitorques). Int. J. Mol. Sci. 2011, 12, 3635-3647. https://doi.org/10.3390/ijms12063635
Gao B, Yu L, Qu Y, Song G, Dai C, Zhang R, Yin Z, Wang K, Gao X, Li S-H, et al. An Unstructured Phylogeographic Pattern with Extensive Gene Flow in an Endemic Bird of South China: Collared Finchbill (Spizixos semitorques). International Journal of Molecular Sciences. 2011; 12(6):3635-3647. https://doi.org/10.3390/ijms12063635
Chicago/Turabian StyleGao, Bin, Lijiang Yu, Yanhua Qu, Gang Song, Chuanyin Dai, Ruiying Zhang, Zuohua Yin, Kaifeng Wang, Xuebin Gao, Shou-Hsien Li, and et al. 2011. "An Unstructured Phylogeographic Pattern with Extensive Gene Flow in an Endemic Bird of South China: Collared Finchbill (Spizixos semitorques)" International Journal of Molecular Sciences 12, no. 6: 3635-3647. https://doi.org/10.3390/ijms12063635