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Keywords = pliant region

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14 pages, 3946 KiB  
Article
Sequence Alignment-Based Prediction of Myosin 7A: Structural Implications and Protein Interactions
by Chan Jong Yu, Yoon Ho Park, Bumhan Ryu and Hyun Suk Jung
Int. J. Mol. Sci. 2024, 25(6), 3365; https://doi.org/10.3390/ijms25063365 - 16 Mar 2024
Cited by 1 | Viewed by 2095
Abstract
Myosin, a superfamily of motor proteins, obtain the energy they require for movement from ATP hydrolysis to perform various functions by binding to actin filaments. Extensive studies have clarified the diverse functions performed by the different isoforms of myosin. However, the unavailability of [...] Read more.
Myosin, a superfamily of motor proteins, obtain the energy they require for movement from ATP hydrolysis to perform various functions by binding to actin filaments. Extensive studies have clarified the diverse functions performed by the different isoforms of myosin. However, the unavailability of resolved structures has made it difficult to understand the way in which their mechanochemical cycle and structural diversity give rise to distinct functional properties. With this study, we seek to further our understanding of the structural organization of the myosin 7A motor domain by modeling the tertiary structure of myosin 7A based on its primary sequence. Multiple sequence alignment and a comparison of the models of different myosin isoforms and myosin 7A not only enabled us to identify highly conserved nucleotide binding sites but also to predict actin binding sites. In addition, the actomyosin-7A complex was predicted from the protein–protein interaction model, from which the core interface sites of actin and the myosin 7A motor domain were defined. Finally, sequence alignment and the comparison of models were used to suggest the possibility of a pliant region existing between the converter domain and lever arm of myosin 7A. The results of this study provide insights into the structure of myosin 7A that could serve as a framework for higher resolution studies in future. Full article
(This article belongs to the Special Issue Advances in Protein Dynamics)
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17 pages, 3303 KiB  
Article
Study of Dynamic Viscoelasticity of a Mineral Oil-Based Magnetic Fluid
by Zhanxian Li, Yifei Guo, Hujun Wang, Chengyao Deng, Jiahao Dong, Zhongru Song and Zhenkun Li
Magnetochemistry 2023, 9(6), 143; https://doi.org/10.3390/magnetochemistry9060143 - 29 May 2023
Cited by 4 | Viewed by 1994
Abstract
Magnetic fluid is a field-responsive intelligent fluid, which has the flow characteristics of liquid and the elastic properties of solid. Because of its unique properties, it has a strong application prospect in the fields of magnetic soft robot, intelligent sensor, and so on. [...] Read more.
Magnetic fluid is a field-responsive intelligent fluid, which has the flow characteristics of liquid and the elastic properties of solid. Because of its unique properties, it has a strong application prospect in the fields of magnetic soft robot, intelligent sensor, and so on. Dynamic viscoelasticity is a significant index to investigate the performance of magnetic fluid in the application process. In this paper, the dynamic viscoelasticity of a homemade mineral oil-based magnetic fluid was investigated under oscillatory shear experimental conditions using an MCR302 rheometer, and the effects of different temperatures and magnetic fields on the dynamic viscoelasticity were examined. Amplitude sweeps tests showed that the value of the storage modulus remained constant within the linear viscoelastic region (LVE) and the stable structure was not destroyed. As the magnetic field strength increased or the temperature increased, the range of the linear viscoelastic zone decreased. At large amplitude, the loss modulus will first appear as a peak and then decrease. The frequency sweep experiment showed that the storage modulus and loss modulus increased with the increase in angular frequency, and the greater the magnetic field intensity, the longer the internal structure relaxation time. When the magnetic field was constant, the higher the temperature, the smaller the storage modulus and loss modulus of the magnetic fluid. At high temperature, the loss coefficient of mesmeric fluid was large, and the magnetic fluid was more viscous. The lower the temperature is, the smaller the loss coefficient of the magnetic fluid is, and the magnetic fluid is more pliant. The study of dynamic viscoelasticity of magnetic fluids lays the foundation for establishing the complete structure intrinsic relationship of magnetic fluids and provides guidance for the application of magnetic fluids in magnetic 3D printing, droplet robot, and smart wear. Full article
(This article belongs to the Section Applications of Magnetism and Magnetic Materials)
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