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The mathematical universe of the quantum topos, which is formulated on the basis of classical Boolean snapshots, delivers a neo-realist description of quantum mechanics that preserves realism. The main contribution of this article is developing formal objectivity in physical theories beyond quantum mechanics in the topos-theory approach. It will be shown that neo-realist responses to non-perturbative structures of quantum field theory do not preserve realism. In this regard, the method of Feynman graphons is applied to reframe the task of describing objectivity in quantum field theory in terms of replacing the standard Hilbert-space/operator-algebra ontology with a new context category built from a certain family of topological Hopf subalgebras of the topological Hopf algebra of renormalization as algebraic/combinatorial data tied to non-perturbative structures. This topological-Hopf-algebra ontology, which is independent of instrumentalist probabilities, enables us to reconstruct gauge field theories on the basis of the mathematical universe of the non-perturbative topos. The non-Boolean logic of the non-perturbative topos cannot be recovered by classical Boolean snapshots, which is in contrast to the quantum-topos reformulation of quantum mechanics. The article formulates a universal version of the non-perturbative topos to show that quantum field theory is a globally and locally neo-realist theory which can be reconstructed independent of the standard Hilbert-space/operator-algebra ontology. Formal objectivity of the universal non-perturbative topos offers a new route to build objective semantics for non-perturbative structures. Full article