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Keywords = microecological niche

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17 pages, 1604 KiB  
Review
Research Progress on the Exacerbation of Lipid Metabolism by Malassezia and Its Impact on the Skin Barrier Function
by Yating Cheng, Jianhang Cong, Jiahui Xu, Lifeng Tang, Ziyan Zhou, Xiaobin Yang, Yunfeng Hu, Yifang Li, Rongrong He and Qi Xiang
Cosmetics 2025, 12(2), 67; https://doi.org/10.3390/cosmetics12020067 - 3 Apr 2025
Viewed by 2567
Abstract
The study of the fungal communities of the skin constitutes a pivotal component of skin microbiome research. Within these communities, the genus Malassezia stands out as a major constituent, representing 50% to 80% of the total fungal colonization on the skin of healthy [...] Read more.
The study of the fungal communities of the skin constitutes a pivotal component of skin microbiome research. Within these communities, the genus Malassezia stands out as a major constituent, representing 50% to 80% of the total fungal colonization on the skin of healthy individuals. The excessive growth or metabolic irregularities of this genus are intimately connected with the onset of various skin disorders that are intrinsically linked to its lipid-dependent nature. Cutaneous lipid metabolism is indispensable for maintaining the skin barrier function and skin health. Malassezia possesses the ability to encode multiple lipase genes, and the secretion of these lipases plays a pivotal role in the survival strategies of the fungi. This review explores recent advances in the ecological niche of Malassezia in skin microecological homeostasis, its mechanism of disrupting skin lipids through catabolic metabolites, and the relationship between this disruption of the skin lipid barrier and skin diseases. This review offers a reference for future research on the mechanisms by which Malassezia affects lipid metabolism and provides a theoretical foundation for the development of innovative therapeutic approaches for dermatological conditions. Full article
(This article belongs to the Section Cosmetic Dermatology)
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15 pages, 5282 KiB  
Article
Humus Soil Inhibits Antibiotic Resistance Gene Rebound in Swine Manure Composting by Modulating Microecological Niches
by Xiaoxia Hao, Mengting Chen, Weiping Sang, Linyuan Shen, Li Zhu, Dongmei Jiang and Lin Bai
Microorganisms 2025, 13(3), 571; https://doi.org/10.3390/microorganisms13030571 - 3 Mar 2025
Cited by 2 | Viewed by 728
Abstract
Aerobic composting is widely used for the degradation of organic matter, simultaneously reducing the presence of antibiotic resistance genes (ARGs) in swine manure. However, the phenomenon of abundance rebound or even enrichment of ARGs is still a problem. The effect and mechanism of [...] Read more.
Aerobic composting is widely used for the degradation of organic matter, simultaneously reducing the presence of antibiotic resistance genes (ARGs) in swine manure. However, the phenomenon of abundance rebound or even enrichment of ARGs is still a problem. The effect and mechanism of humus soil (Hs) on ARG reduction by adding it into the piles (0% for the control group (CK); 10% for S1 group; 20% for S2 group; and 30% for S3 group) after the thermophilic phase of composting was investigated. The results indicated that Hs promoted organic matter degradation and nitrogen loss. During days 15–36, the greatest reduction of 69.91% in total ARG abundance was observed in S2, while the abundance rebounded by 222.75% in CK and decreased only 13.71% in S3. With the 20% Hs addition, 85.42% abundance reduction for mobile genetic elements (MGEs) and 100% removal rates for aadA5, aadA9, sul1, sul2, and tetX were achieved. Moreover, the addition of Hs immediately changed the bacterial community structure of the substrate and varied the bacterial community successional direction in the treatments. Additionally, significantly positive correlations (|r| > 0.6; p < 0.05) were found between the top 20 genera and ARGs. The potential host bacteria for ARGs changed from Lactobacillus, Fermentimonas, Pusillimonas, and Ruminofilibacter in CK to Lactobacillus, Romboutsia, and Streptococcus in S2, highlighting the shift and reduction in host bacteria driven by Hs, which, in turn, influenced the abundance variations in ARGs. This study verified the feasibility of inhibiting the rebound of ARG abundance effectively by influencing the microecological niche in the pile, offering an approach for promoting a reduction in ARGs in animal wastes. Full article
(This article belongs to the Special Issue Bacterial Antibiotic Resistance, Second Edition)
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16 pages, 5710 KiB  
Article
Evaluation of Rain Shelter Cultivation Mode Effects on Microecological Environment of Mountain Cultivated Ginseng Rhizosphere
by Yinan Yu, Jingzi Piao, Siyi Guo, Bing Li, Zibo Li and Rujun Zhou
Agronomy 2024, 14(11), 2590; https://doi.org/10.3390/agronomy14112590 - 3 Nov 2024
Viewed by 1118
Abstract
Rainfall, particularly in continental climates with a monsoonal tendency, impacts the microbial niches during the growth of mountain cultivated ginseng. With shifts in the microbial community, diseases in ginseng cultivated and protected under rain shelter conditions may ultimately be altered. Such cultivation may [...] Read more.
Rainfall, particularly in continental climates with a monsoonal tendency, impacts the microbial niches during the growth of mountain cultivated ginseng. With shifts in the microbial community, diseases in ginseng cultivated and protected under rain shelter conditions may ultimately be altered. Such cultivation may influence microflora dynamics through variations in meteorological parameters; however, this is not yet clear. The present study found that rain shelter cultivation affected the distribution of fungal communities within mountain cultivated ginseng. This led to an improved community structure in the ginseng rhizosphere, characterized by the proliferation of antagonistic fungi and a reduction in pathogenic fungi. A correlation analysis of meteorological factors found that soil temperature and humidity were the primary meteorological factors affecting mountain cultivated ginseng. It is evident that rain shelter cultivation regulated the microecological environment of the mountain cultivated ginseng’s rhizosphere and resulted in positive outcomes. A disease investigation supported this finding. The incidence of ginseng root diseases, such as rust and root rot, was reduced by 5–6%. The incidence of ginseng leaf diseases, including gray mold and black spot, was reduced by 5–10%. This research provides evidence to address the dynamics of microbial ecology under rain shelter cultivation and its benefits for sustainable mountain cultivated ginseng management. Full article
(This article belongs to the Section Agroecology Innovation: Achieving System Resilience)
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20 pages, 11207 KiB  
Article
Natural Foraging Selection and Gut Microecology of Two Subterranean Rodents from the Eurasian Steppe in China
by Zhenghaoni Shang, Kai Chen, Tingting Han, Fan Bu, Shanshan Sun, Na Zhu, Duhu Man, Ke Yang, Shuai Yuan and Heping Fu
Animals 2024, 14(16), 2334; https://doi.org/10.3390/ani14162334 - 13 Aug 2024
Cited by 2 | Viewed by 1377
Abstract
As the most abundant group of mammals, rodents possess a very rich ecotype, which makes them ideal for studying the relationship between diet and host gut microecology. Zokors are specialized herbivorous rodents adapted to living underground. Unlike more generalized herbivorous rodents, they feed [...] Read more.
As the most abundant group of mammals, rodents possess a very rich ecotype, which makes them ideal for studying the relationship between diet and host gut microecology. Zokors are specialized herbivorous rodents adapted to living underground. Unlike more generalized herbivorous rodents, they feed on the underground parts of grassland plants. There are two species of the genus Myospalax in the Eurasian steppes in China: one is Myospalax psilurus, which inhabits meadow grasslands and forest edge areas, and the other is M. aspalax, which inhabits typical grassland areas. How are the dietary choices of the two species adapted to long-term subterranean life, and what is the relationship of this diet with gut microbes? Are there unique indicator genera for their gut microbial communities? Relevant factors, such as the ability of both species to degrade cellulose, are not yet clear. In this study, we analyzed the gut bacterial communities and diet compositions of two species of zokors using 16S amplicon technology combined with macro-barcoding technology. We found that the diversity of gut microbial bacterial communities in M. psilurus was significantly higher than that in M. aspalax, and that the two species of zokors possessed different gut bacterial indicator genera. Differences in the feeding habits of the two species of zokors stem from food composition rather than diversity. Based on the results of Mantel analyses, the gut bacterial community of M. aspalax showed a significant positive correlation with the creeping-rooted type food, and there was a complementary relationship between the axis root-type-food- and the rhizome-type-food-dominated (containing bulb types and tuberous root types) food groups. Functional prediction based on KEGG found that M. psilurus possessed a stronger degradation ability in the same cellulose degradation pathway. Neutral modeling results show that the gut flora of the M. psilurus has a wider ecological niche compared to that of the M. aspalax. This provides a new perspective for understanding how rodents living underground in grassland areas respond to changes in food conditions. Full article
(This article belongs to the Section Ecology and Conservation)
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18 pages, 4589 KiB  
Article
Nitrogen and Phosphorus Discriminate the Assembly Processes of Prokaryotic and Eukaryotic Algae in an Agricultural Drainage Receiving Lake
by Dongnan Huang, Han Zheng, Jing Cheng, Guanxiong Wu, Lei Zheng and En Xie
Sustainability 2023, 15(3), 2584; https://doi.org/10.3390/su15032584 - 31 Jan 2023
Cited by 3 | Viewed by 2370
Abstract
Phytoplankton and bacteria play key roles in material cycling and their consequent eco-functions in lakes, which are threatened by anthropogenic pressures, especially agricultural activities, which, in the watershed, are effective in changing the material composition and hydrodynamic conditions of the lake through material [...] Read more.
Phytoplankton and bacteria play key roles in material cycling and their consequent eco-functions in lakes, which are threatened by anthropogenic pressures, especially agricultural activities, which, in the watershed, are effective in changing the material composition and hydrodynamic conditions of the lake through material input and water withdrawal. This process theoretically changes the interaction and assembly pattern of microorganisms, which are important factors driving the structural and functional evolution of ecological communities in lakes. In this research, the community structure, interactions, and assembly of phytoplankton and bacteria were investigated during agro-irrigation seasons in a typical agricultural drainage receiving lake, Wuliangsuhai. The results showed that the seasonal variations in the community were driven by nitrogen and phosphorus. In particular, Cyanobacteria increased significantly during the seasons with the regulation of TP (λ = 0.56, p < 0.01, n = 30). The TN positively drove Chlorophyta and Bacillariophyta (λ = 0.42 and 0.65, p < 0.05, n = 30). Furthermore, MENA showed that planktonic algae and bacterial community interactions were enhanced, and interspecific competition increased at high trophic levels. The community assembly is primarily a stochastic process that is mostly related to hydrodynamic conditions. The second related factor, nitrogen and phosphorus inputs, had obvious effects on community assembly, which responded to its effects on species diversity, niche width, and interactions, and they jointly controlled community assembly. This study reveals that the assembly processes of bacteria and planktonic algae were driven by different environmental factors in specific ways, which provides a new view for understanding agriculture’s impacts on microecology and helps in developing lake protection strategies. Full article
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14 pages, 10479 KiB  
Article
Characterization of Bacterial Differences Induced by Cleft-Palate-Related Spatial Heterogeneity
by Fangjie Zhou, Zhifei Su, Qinyang Li, Renke Wang, Ying Liao, Min Zhang and Jiyao Li
Pathogens 2022, 11(7), 771; https://doi.org/10.3390/pathogens11070771 - 5 Jul 2022
Cited by 6 | Viewed by 2948
Abstract
Background: Cleft palate (CP) patients have a higher prevalence of oral and respiratory tract bacterial infections than the general population. Nevertheless, characteristics of bacterial differences induced by CP-related anatomical heterogeneity are unknown. Methods: In this study, we systematically described the characteristics of [...] Read more.
Background: Cleft palate (CP) patients have a higher prevalence of oral and respiratory tract bacterial infections than the general population. Nevertheless, characteristics of bacterial differences induced by CP-related anatomical heterogeneity are unknown. Methods: In this study, we systematically described the characteristics of bacteria in the oral and nasal niches in healthy children, CP children, healthy adolescents, CP adolescents, and postoperative adolescents by 454-pyrosequencing technology (V3–V6) to determine bacterial differences induced by CP. Results: Due to the CP-induced variations in spatial structure, the early establishment of microecology in CP children was different from that in healthy children. Nasal bacterial composition showed greater changes than in the saliva. Moreover, such discrepancy also appeared in CP and postoperative adolescents who had even undergone surgery > 10 years previously. Interestingly, we found by Lefse analysis that part of bacterial biomarkers in the nasal cavity of CP subjects was common oral flora, suggesting bacterial translocation between the oral and nasal niches. Therefore, we defined the oral–nasal translocation bacteria as O-N bac. By comparing multiple groups, we took the intersection sets of O-N bacs selected from CP children, CP adolescents, and postoperative adolescents as TS O-N bacs with time–character, including Streptococcus, Gemella, Alloprevotella, Neisseria, Rothia, Actinomyces, and Veillonella. These bacteria were at the core of the nasal bacterial network in CP subjects, and some were related to infectious diseases. Conclusions: CP would lead to significant and long-term differences in oral and nasal flora. TS O-N bacs migrating from the oral to the nasal might be the key stone causing nasal flora dysbiosis in the CP patients. Full article
(This article belongs to the Special Issue Insights in Oral Microbiota)
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16 pages, 2735 KiB  
Article
Niche Variation in Endemic Lilium pomponium on a Wide Altitudinal Gradient in the Maritime Alps
by Ninon Fontaine, Perrine Gauthier, Gabriele Casazza and John D. Thompson
Plants 2022, 11(6), 833; https://doi.org/10.3390/plants11060833 - 21 Mar 2022
Cited by 3 | Viewed by 2820
Abstract
The relationship between altitudinal and ecological gradients has long been a dominant theme in plant ecology; moreover, how species respond to climate change has renewed this interest. Mediterranean mountains are often hotspots of endemism, and some endemic species have local distributions that span [...] Read more.
The relationship between altitudinal and ecological gradients has long been a dominant theme in plant ecology; moreover, how species respond to climate change has renewed this interest. Mediterranean mountains are often hotspots of endemism, and some endemic species have local distributions that span different climatic belts; hence, local variations in topography and fine-scaled niche conditions may play crucial roles in their persistence along such gradients. Studies of the fine-scaled niche are, however, very rare; most studies involve broad-scale variations in climatic parameters. The Turban lily, Lilium pomponium L. is endemic to the Maritime and Ligurian Alps, where it occurs across a wide altitudinal gradient. Previous work has shown no link between climatic marginality and geographic range limits on morphological traits and genetic variability; however, possible variations of local topographic and ecological parameters have not yet been examined. The objective of this paper is to characterise local ecological niche conditions of L. pomponium populations in the different bioclimatic zones it occupies along the altitudinal gradient. The species occurs in four main types of microecological niches. One of these niche types, with a high mineral cover, is the most abundant—type 2: it was detected in 39% of sampled quadrats and occurs across the whole bioclimatic gradient. Other niche types are more limited to subsections of the gradient: type 3 (in 19% of sampled quadrats) is restricted to high-altitude sites (>1070 m.a.s.l.) and is characterised by high vegetation and litter cover; type 4 (26%) corresponds to more forested habitats on substrates with low water retention capacities, in more inland zones close to the centre of L. pomponium distribution and across a range of altitudes; and type 1 (16% of quadrat) only occurs in the Mediterranean part of the gradient, close to distribution limits in pockets of soil among large blocks of rocks, mainly found at mid-altitudes. Despite heterogeneity in the spatial locations of niche types, there is no correspondence between ecological gradients and the distribution limits of this species. Knowledge of the fine-scaled ecological conditions that determine niche types is thus essential for conservation management of the habitats of this species and for the exploration of its possible response to ongoing climate change. Full article
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