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This study first describes the extended Grid-Point Statistical Interpolation analysis system (GSI)-based ensemble-variational data assimilation (DA) system within the North American Mesoscale Rapid Refresh (NAMRR) system for the Nonhydrostatic Multiscale Model on the B grid (NMMB). Experiments were conducted to examine three critical aspects of data assimilation configuration in this system. Ten retrospective high-impact convective cases during the warm season of 2015–2016 were adopted for testing. A 10-member, 18 h ensemble forecast was launched for each experiment. Specifically, the experiment using horizontal (vertical) localization radii (L_r) of 300 km (0.55-scaled height measured in the nature log of pressure) overall had more skills than that of 500 km (1.1-scaled height) for conventional in-situ observation assimilation. Diagnostics suggest that the higher forecast skills could be attributed to applying smaller L_r in the boundary with large temperature and moisture gradients. For radar DA, the experiment was more skillful with horizontal (vertical) L_r of 15 km (1.1-scaled height) than that of 12 km (0.55-scaled height). Diagnostics suggest that the improved forecasts were achieved by using wider L_r to spread radar observations into unobserved areas more effectively. Slight forecast skill differences between the relaxation inflation factors of 95% and 65% are presented. The impact of varying inflation magnitudes primarily occurred in the upper-level spread. Full article