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Keywords = DLA VP

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20 pages, 3538 KiB  
Article
Immunoinformatics for Novel Multi-Epitope Vaccine Development in Canine Parvovirus Infections
by Bashudeb Paul, Jahangir Alam, Mridha Md. Kamal Hossain, Syeda Farjana Hoque, Md. Nazmul Islam Bappy, Hafsa Akter, Nadim Ahmed, Margia Akter, Mohammad Ali Zinnah, Shobhan Das, Md. Mukthar Mia, Md. Shafiullah Parvej, Sonjoy Sarkar, Hiren Ghosh, Mahmudul Hasan, Hossam M. Ashour and Md. Masudur Rahman
Biomedicines 2023, 11(8), 2180; https://doi.org/10.3390/biomedicines11082180 - 2 Aug 2023
Cited by 5 | Viewed by 3762
Abstract
Canine parvovirus (CPV-2) is one of the most important pathogens of dogs of all ages, causing pandemic infections that are characterized by fatal hemorrhagic enteritis. The CPV-2 vaccine is recommended as a core vaccine for pet animals. Despite the intensive practice of active [...] Read more.
Canine parvovirus (CPV-2) is one of the most important pathogens of dogs of all ages, causing pandemic infections that are characterized by fatal hemorrhagic enteritis. The CPV-2 vaccine is recommended as a core vaccine for pet animals. Despite the intensive practice of active immunization, CPV-2 remains a global threat. In this study, a multi-epitope vaccine against CPV-2 was designed, targeting the highly conserved capsid protein (VP2) via in silico approaches. Several immunoinformatics methods, such as epitope screening, molecular docking, and simulation were used to design a potential vaccine construct. The partial protein sequences of the VP2 gene of CPV-2 and protein sequences retrieved from the NCBI were screened to predict highly antigenic proteins through antigenicity, trans-membrane-topology screening, an allergenicity assessment, and a toxicity analysis. Homologous VP2 protein sequences typically linked to the disease were identified using NCBI BLAST, in which four conserved regions were preferred. Overall, 10 epitopes, DPIGGKTGI, KEFDTDLKP, GTDPDDVQ, GGTNFGYIG, GTFYFDCKP, NRALGLPP, SGTPTN, LGLPPFLNSL, IGGKTG, and VPPVYPN, were selected from the conserved regions to design the vaccine construct. The molecular docking demonstrated the higher binding affinity of these epitopes with dog leukocyte antigen (DLA) molecules. The selected epitopes were linked with Salmonella enterica flagellin FliC adjuvants, along with the PADRE sequence, by GGS linkers to construct a vaccine candidate with 272 nucleotides. The codon adaptation and in silico cloning showed that the generated vaccine can be expressed by the E. coli strain, K12, and the sequence of the vaccine construct showed no similarities with dog protein. Our results suggest that the vaccine construct might be useful in preventing canine parvoviral enteritis (CPE) in dogs. Further in vitro and in vivo experiments are needed for the validation of the vaccine candidate. Full article
(This article belongs to the Special Issue Molecular Research in Infectious Diseases)
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13 pages, 2698 KiB  
Article
Synthesis and Thermal Analysis of Non-Covalent PS-b-SC-b-P2VP Triblock Terpolymers via Polylactide Stereocomplexation
by Ameen Arkanji, Viko Ladelta, Konstantinos Ntetsikas and Nikos Hadjichristidis
Polymers 2022, 14(12), 2431; https://doi.org/10.3390/polym14122431 - 15 Jun 2022
Cited by 7 | Viewed by 2689
Abstract
Polylactides (PLAs) are thermoplastic materials known for their wide range of applications. Moreover, the equimolar mixtures of poly(L-Lactide) (PLLA) and poly(D-Lactide) (PDLA) can form stereocomplexes (SCs), which leads to the formation of new non-covalent complex macromolecular architectures. In this work, we report the [...] Read more.
Polylactides (PLAs) are thermoplastic materials known for their wide range of applications. Moreover, the equimolar mixtures of poly(L-Lactide) (PLLA) and poly(D-Lactide) (PDLA) can form stereocomplexes (SCs), which leads to the formation of new non-covalent complex macromolecular architectures. In this work, we report the synthesis and characterization of non-covalent triblock terpolymers of polystyrene-b-stereocomplex PLA-b-poly(2-vinylpyridine) (PS-b-SC-b-P2VP). Well-defined ω-hydroxy-PS and P2VP were synthesized by “living” anionic polymerization high-vacuum techniques with sec-BuLi as initiator, followed by termination with ethylene oxide. The resulting PS-OH and P2VP-OH were used as macroinitiators for the ring-opening polymerization (ROP) of DLA and LLA with Sn(Oct)2 as a catalyst to afford PS-b-PDLA and P2VP-b-PLLA, respectively. SC formation was achieved by mixing PS-b-PDLA and P2VP-b-PLLA chloroform solutions containing equimolar PLAs segments, followed by precipitation into n-hexane. The molecular characteristics of the resulting block copolymers (BCPs) were determined by 1H NMR, size exclusion chromatography, and Fourier-transform infrared spectroscopy. The formation of PS-b-SC-b-P2VP and the effect of molecular weight variation of PLA blocks on the resulting polymers, were investigated by differential scanning calorimetry, X-ray powder diffraction, and circular dichroism spectroscopies. Full article
(This article belongs to the Special Issue Advances and Applications of Block Copolymers)
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19 pages, 8574 KiB  
Article
An Integrated Analysis Framework of Convolutional Neural Network for Embedded Edge Devices
by Seung-Ho Lim, Shin-Hyeok Kang, Byeong-Hyun Ko, Jaewon Roh, Chaemin Lim and Sang-Young Cho
Electronics 2022, 11(7), 1041; https://doi.org/10.3390/electronics11071041 - 26 Mar 2022
Cited by 5 | Viewed by 2630
Abstract
Recently, IoT applications using Deep Neural Network (DNN) to embedded edge devices are increasing. Generally, in the case of DNN applications in the IoT system, training is mainly performed in the server and inference operation is performed on the edge device. The embedded [...] Read more.
Recently, IoT applications using Deep Neural Network (DNN) to embedded edge devices are increasing. Generally, in the case of DNN applications in the IoT system, training is mainly performed in the server and inference operation is performed on the edge device. The embedded edge devices still take a lot of loads in inference operations due to low computing resources, so proper customization of DNN with architectural exploration is required. However, there are few integrated frameworks to facilitate exploration and customization of various DNN models and their operations in embedded edge devices. In this paper, we propose an integrated framework that can explore and customize DNN inference operations of DNN models on embedded edge devices. The framework consists of the GUI interface part, the inference engine part, and the hardware Deep Learning Accelerator (DLA) Virtual Platform (VP) part. Specifically it focuses on Convolutional Neural Network (CNN), and provides integrated interoperability for convolutional neural network models and neural network customization techniques such as quantization and cross-inference functions. In addition, performance estimation is possible by providing hardware DLA VP for embedded edge devices. Those features are provided as web-based GUI interfaces, so users can easily utilize them. Full article
(This article belongs to the Special Issue AI for Embedded Systems)
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