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Keywords = Crested Ibis

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24 pages, 5430 KiB  
Article
Estimating Aboveground Biomass of Wetland Plant Communities from Hyperspectral Data Based on Fractional-Order Derivatives and Machine Learning
by Huazhe Li, Xiying Tang, Lijuan Cui, Xiajie Zhai, Junjie Wang, Xinsheng Zhao, Jing Li, Yinru Lei, Jinzhi Wang, Rumiao Wang and Wei Li
Remote Sens. 2024, 16(16), 3011; https://doi.org/10.3390/rs16163011 - 16 Aug 2024
Cited by 1 | Viewed by 1732
Abstract
Wetlands, as a crucial component of terrestrial ecosystems, play a significant role in global ecological services. Aboveground biomass (AGB) is a key indicator of the productivity and carbon sequestration potential of wetland ecosystems. The current research methods for remote-sensing estimation of biomass either [...] Read more.
Wetlands, as a crucial component of terrestrial ecosystems, play a significant role in global ecological services. Aboveground biomass (AGB) is a key indicator of the productivity and carbon sequestration potential of wetland ecosystems. The current research methods for remote-sensing estimation of biomass either rely on traditional vegetation indices or merely perform integer-order differential transformations on the spectra, failing to fully leverage the information complexity of hyperspectral data. To identify an effective method for estimating AGB of mixed-wetland-plant communities, we conducted field surveys of AGB from three typical wetlands within the Crested Ibis National Nature Reserve in Hanzhong, Shaanxi, and concurrently acquired canopy hyperspectral data with a portable spectrometer. The spectral features were transformed by applying fractional-order differentiation (0.0 to 2.0) to extract optimal feature combinations. AGB prediction models were built using three machine learning models, XGBoost, Random Forest (RF), and CatBoost, and the accuracy of each model was evaluated. The combination of fractional-order differentiation, vegetation indices, and feature importance effectively yielded the optimal feature combinations, and integrating vegetation indices with feature bands enhanced the predictive accuracy of the models. Among the three machine-learning models, the RF model achieved superior accuracy using the 0.8-order differential transformation of vegetation indices and feature bands (R2 = 0.673, RMSE = 23.196, RPD = 1.736). The optimal RF model was visually interpreted using Shapley Additive Explanations, which revealed that the contribution of each feature varied across individual sample predictions. Our study provides methodological and technical support for remote-sensing monitoring of wetland AGB. Full article
(This article belongs to the Special Issue Remote Sensing for Wetland Restoration)
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15 pages, 2210 KiB  
Article
Perceived Benefit, Policy Incentive and Farmers’ Organic Fertilizer Application in Protected Areas
by Jie Yang, Kaiwen Su, Ziyi Zhang, Sihan Guo, Yilei Hou and Yali Wen
Agriculture 2024, 14(6), 810; https://doi.org/10.3390/agriculture14060810 - 23 May 2024
Cited by 2 | Viewed by 1690
Abstract
The green production behaviors of farmers in protected areas (PAs) can reduce environmental disturbances and contribute to the effectiveness of PAs. Based on a survey of 708 farmers in Wuyishan National Park (WNP) and Crested Ibis Nature Reserve (CINR), we studied the influence [...] Read more.
The green production behaviors of farmers in protected areas (PAs) can reduce environmental disturbances and contribute to the effectiveness of PAs. Based on a survey of 708 farmers in Wuyishan National Park (WNP) and Crested Ibis Nature Reserve (CINR), we studied the influence of perceived benefit and policy incentive on farmers’ organic fertilizer application. Results: (1) Perceived benefit, subsidies policy, and propaganda policy significantly promoted farmers’ organic fertilizer application, with perceived benefit having the strongest effect, followed by subsidies policy. The influence of restriction policy was not significant. (2) Perceived benefit, subsidies policy, and propaganda policy indirectly influenced organic fertilizer application through ecological awareness. (3) In WNP, perceived benefit had the strongest effect on organic fertilizer application, and subsidies policy significantly enhanced farmers’ ecological awareness and influenced their behaviors. In contrast, subsidies policy had the strongest effect on organic fertilizer application, but did not significantly enhance farmers’ ecological awareness in CINR. These results offer valuable insights for promoting green production behaviors of farmers in PAs. This study implies that there must be a pathway for the realization of ecological value in ecological protection. Ecological value realization is the endogenous motivation for farmers’ sustainable green production behaviors. However, government subsidies and guidance are also essential in the early stage. Full article
(This article belongs to the Section Agricultural Economics, Policies and Rural Management)
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18 pages, 763 KiB  
Article
Can Cooperatives Enhance the Income-Generating Effect of Eco-Industries for Farmers?—Empirical Evidence from the Crested Ibis National Nature Reserve, China
by Li Ma, Zimeng Chen, Kaiwen Su, Han Zhang, Yali Wen and Yilei Hou
Forests 2024, 15(5), 757; https://doi.org/10.3390/f15050757 - 26 Apr 2024
Cited by 4 | Viewed by 1857
Abstract
Promoting the development of eco-industries plays a significant role in achieving the harmonious symbiosis between economic growth and environmental protection as well as enhancing the comprehensive effectiveness of ecological and economic benefits. Due to their unique nature, cooperatives may play a crucial role [...] Read more.
Promoting the development of eco-industries plays a significant role in achieving the harmonious symbiosis between economic growth and environmental protection as well as enhancing the comprehensive effectiveness of ecological and economic benefits. Due to their unique nature, cooperatives may play a crucial role in facilitating the integration between farmers and the development of eco-industries. To investigate whether cooperatives possess the capacity to enhance the income-generating effects for farmers involved in eco-industries, this study selected the Crested Ibis National Nature Reserve (CINNR), a representative area for eco-industry development, as the research site. Data were gathered through face-to-face interviews, and this research empirically analyzed the impact of cooperatives on the income-generating effect of farmers using endogenous switching regression (ESR). The findings are threefold. First, cooperatives indeed enhance the income-generating effects for farmers engaged in eco-industries. Second, variables such as the distribution of agroforestry materials, premium capacity, soil quality, and status of village cadres have a positive impact on farmers joining cooperatives, whereas punishment initiatives discourage their participation. Third, for farmers who have joined cooperatives, factors such as the distribution of agroforestry materials, premium capacity, low-cost conservation initiatives, land area, status of village cadres, the proportion of labor force, technical training, soil quality, and land area positively affect their income from eco-industries. Conversely, punishment initiatives, age, and land location negatively impact their income. The results of this study provide new ideas for farmers to participate in the development of eco-industries, new evidence showing co-operatives can improve farmers’ income, and new directions for coordinating conflicts between conservation and development in protected areas. Full article
13 pages, 904 KiB  
Article
Study on the Correlation between the Activity Trajectory of Crested Ibis (Nipponia nippon) and Meteorological Changes
by Fan Li, Xiaoxiao Liu, Xian Jiang, Li Guan and Dongping Liu
Appl. Sci. 2024, 14(1), 377; https://doi.org/10.3390/app14010377 - 31 Dec 2023
Viewed by 1371
Abstract
This study aims to explore the correlation between the activity trajectory of Crested Ibis and meteorological changes. The trajectory data of Crested Ibis were obtained using the HQBG3621L backpack-style tracker, and the spatiotemporal characteristics of the trajectory data were analyzed to obtain information [...] Read more.
This study aims to explore the correlation between the activity trajectory of Crested Ibis and meteorological changes. The trajectory data of Crested Ibis were obtained using the HQBG3621L backpack-style tracker, and the spatiotemporal characteristics of the trajectory data were analyzed to obtain information on the activity range and habitat of Crested Ibis. The Scheirer–Ray–Hare test and Kruskal–Wallis test were used to investigate the impact of meteorological factors on the activity of Crested Ibis. The study found that meteorological factors have a certain influence on the habitat selection and activity patterns of Crested Ibis. Through this research, a better understanding of the interaction between Crested Ibis and the meteorological environment can be achieved, providing a scientific basis for the conservation and ecological management of Crested Ibis. Full article
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16 pages, 1123 KiB  
Article
A Breeding Plumage in the Making: The Unique Process of Plumage Coloration in the Crested Ibis in Terms of Chemical Composition and Sex Hormones
by Danni Liu, Yiwei Tong, Rong Dong, Xinping Ye and Xiaoping Yu
Animals 2023, 13(24), 3820; https://doi.org/10.3390/ani13243820 - 11 Dec 2023
Cited by 2 | Viewed by 2375
Abstract
The Crested Ibis (Nipponia nippon) has long fascinated ornithologists with its enigmatic plumage color change. After more than a century of curiosity, the mystery was finally unraveled in the 1970s, unveiling the mechanism behind this remarkable transformation. Unlike other bird species, [...] Read more.
The Crested Ibis (Nipponia nippon) has long fascinated ornithologists with its enigmatic plumage color change. After more than a century of curiosity, the mystery was finally unraveled in the 1970s, unveiling the mechanism behind this remarkable transformation. Unlike other bird species, the Crested Ibis achieves its nuptial plumage coloration through a unique daubing behavior. After a water-bathing, it applies a sticky black substance secreted by a patch of skin in the neck and throat region. However, the chemical components of this black substance have not been studied in detail until now. To address this issue, we conducted a study to detect the components of the black substance and explore the relationship between sex hormone levels and the secretion of the black substance. We used enzyme-linked immunosorbent assay (ELISA) to measure the monthly changes in steroid hormone levels (estradiol E2, testosterone T, and progesterone PROG) levels in feces. We also analyzed the correlation between sex hormone levels and daubing behavior. The results showed that the sex hormone levels are closely related to the secretion and application of the black substance. In addition, we qualitatively analyzed the chemical components of the black substance using gas chromatography–mass spectrometry (GC-MS), uncovering the presence of 117 distinct chemical components. We assume that the black coloration results from the polymerization of selected chemical constituents among these components. These findings provide a groundwork for further exploration into the biological significance of the black substance. Overall, our study detected components in the black substance and studied how sex hormone levels relate to its secretion. Understanding the hormone effects on coloration helps in precise habitat management, like wetland preservation, crucial for Crested Ibis survival. Implementing hormone-boosting measures during breeding seasons enhances reproduction and health, vital for their conservation. Full article
(This article belongs to the Section Birds)
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15 pages, 9838 KiB  
Article
Spatial- and Temporal-Trajectory Analysis of the Crested Ibis (Nipponia nippon) by Fusing Multiple Sources of Data
by Yulong Zhou, Xian Jiang and Zhanlong Chen
Animals 2023, 13(2), 237; https://doi.org/10.3390/ani13020237 - 9 Jan 2023
Cited by 2 | Viewed by 2041
Abstract
The Crested Ibis (Nipponia nippon) is an endangered animal with an extremely high ecological, humanistic, and scientific value. However, this species still faces survival challenges, due to rapidly shrinking foraging grounds, the serious interference of human behavior, and increased habitat requirements. [...] Read more.
The Crested Ibis (Nipponia nippon) is an endangered animal with an extremely high ecological, humanistic, and scientific value. However, this species still faces survival challenges, due to rapidly shrinking foraging grounds, the serious interference of human behavior, and increased habitat requirements. Geographical environment is a significant factor affecting Crested Ibis behavior-pattern analysis and habitat protection. The spatial and temporal trajectory contains habitat location and period information, a vital record of the Crested Ibis’ habits, and the basis of all research. Nevertheless, there are only a handful of studies on the missing trajectory data and fusing multiple sources of environmental data-research methods. We studied the spatial and temporal habitat use of the tracked Crested lbis by fusing multiple data-sources in China. This paper adopts the LSTM (long short-term memory) model to supplement the missing trajectory data and perform cluster mining; and a random forest model is used to predict the habitat of the Crested Ibis with high fitting accuracy (R2 = 84.9%). The results show that the Crested Ibis distribution-pattern is characterized by high altitude and proximity to woodland and rivers. Additionally, the habitat dependence on the village implicates human agricultural activities in positively impacting its reproduction. This paper provides a complete method for analyzing Crested Ibis’ spatial and temporal trajectory by fusing multi-source data, which is crucial for protecting the survival and reproduction of the Crested Ibis. Full article
(This article belongs to the Section Birds)
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14 pages, 3038 KiB  
Article
Understanding Recovery Is as Important as Understanding Decline: The Case of the Crested Ibis in China
by Xinhai Li, Jiayu Fu, Tianqing Zhai, Yazu Zhang, Michael W. Bruford, Yuehua Sun and Xiangjiang Zhan
Land 2022, 11(10), 1817; https://doi.org/10.3390/land11101817 - 17 Oct 2022
Cited by 2 | Viewed by 2753
Abstract
The wild population of the crested ibis (Nipponia nippon) has recovered remarkably from seven individuals in 1981 to over 7000 in 2021. However, it is unclear how key factors, from endogenous density dependence to exogenous environmental pressure, have contributed to the [...] Read more.
The wild population of the crested ibis (Nipponia nippon) has recovered remarkably from seven individuals in 1981 to over 7000 in 2021. However, it is unclear how key factors, from endogenous density dependence to exogenous environmental pressure, have contributed to the species’ recovery. We used species distribution models to quantify the contributions of climatic variables, human impact, land form and land use in order to understand the recovery process in the context of prevailing environmental conditions. We also calculated the nest density over the past 39 years to estimate the influence of density dependence on population dynamics. We found that the interaction between rice paddy areas and water bodies (rivers, lakes and ponds) had the highest contribution to nest site selection, whereas linear terms for either rice paddies or water bodies alone had little effect. During its recovery, sub-populations in two watersheds have been constrained by high density and have experienced logistic growth, while other sub-populations in over seven watersheds are growing exponentially. Our models indicate that exogenous environmental factors are more important than density restriction at this stage. In China’s transformed landscape, the crested ibis needs both rice paddies and water bodies to fulfil its annual life cycle. Habitat protection should thus cover both habitat types to ensure the long-term survival of this still endangered species. Full article
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10 pages, 1636 KiB  
Article
An Automatic Identification Method of Crested Ibis (Nipponia nippon) Habitat Based on Spatiotemporal Density Detection
by Xian Jiang, Tingdong Yang, Dongping Liu, Yili Zheng, Yan Chen and Fan Li
Animals 2022, 12(17), 2220; https://doi.org/10.3390/ani12172220 - 29 Aug 2022
Cited by 4 | Viewed by 1887
Abstract
To address the current challenges of the heavy workload, time-consuming nature and labor-intensiveness involved in existing crested ibis’s (Nipponia nipponTemminck, 1835) habitat identification approaches, this paper proposes an automatic habitat identification method based on spatiotemporal density detection. With consideration of [...] Read more.
To address the current challenges of the heavy workload, time-consuming nature and labor-intensiveness involved in existing crested ibis’s (Nipponia nipponTemminck, 1835) habitat identification approaches, this paper proposes an automatic habitat identification method based on spatiotemporal density detection. With consideration of the characteristics of the crested ibis’s trajectory data, such as aggregation, repeatability, and uncertainty, this method achieves detecting the crested ibis’s stopping points by using the spatial characteristics of the trajectory data. On this basis, an improved spatiotemporal clustering-based DBSCAN method is proposed in this paper, incorporating temporal characteristics of the trajectory data. By combining the spatial and temporal features, the proposed method is able to accurately identify the roosting and foraging sites among the crested ibis’s stopping points. Supported by remote sensing images and field investigations, it was found that the method proposed in this paper has a good clustering effect and can effectively identify the crested ibis’s foraging sites and overnight roosting areas. Specifically, the woodland, farmland, and river areas are the common foraging sites for the crested ibis, while the woodland with large trees is their common overnight site. Therefore, the method proposed in this paper can provide technical support for identifying and protecting the crested ibis’s habitats. Full article
(This article belongs to the Special Issue Birds Ecology: Monitoring of Bird Health and Populations)
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14 pages, 2603 KiB  
Article
Comparative Genomics Provides Insights into Adaptive Evolution in Tactile-Foraging Birds
by Li Wang, Li Sun, Qiu-Hong Wan and Sheng-Guo Fang
Genes 2022, 13(4), 678; https://doi.org/10.3390/genes13040678 - 12 Apr 2022
Cited by 2 | Viewed by 3444
Abstract
Tactile-foraging birds have evolved an enlarged principal sensory nucleus (PrV) but smaller brain regions related to the visual system, which reflects the difference in sensory dependence. The “trade-off” may exist between different senses in tactile foragers, as well as between corresponding sensory-processing areas [...] Read more.
Tactile-foraging birds have evolved an enlarged principal sensory nucleus (PrV) but smaller brain regions related to the visual system, which reflects the difference in sensory dependence. The “trade-off” may exist between different senses in tactile foragers, as well as between corresponding sensory-processing areas in the brain. We explored the mechanism underlying the adaptive evolution of sensory systems in three tactile foragers (kiwi, mallard, and crested ibis). The results showed that olfaction-related genes in kiwi and mallard and hearing-related genes in crested ibis were expanded, indicating they may also have sensitive olfaction or hearing, respectively. However, some genes required for visual development were positively selected or had convergent amino acid substitutions in all three tactile branches, and it seems to show the possibility of visual degradation. In addition, we may provide a new visual-degradation candidate gene PDLIM1 who suffered dense convergent amino acid substitutions within the ZM domain. At last, two genes responsible for regulating the proliferation and differentiation of neuronal progenitor cells may play roles in determining the relative sizes of sensory areas in brain. This exploration offers insight into the relationship between specialized tactile-forging behavior and the evolution of sensory abilities and brain structures. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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12 pages, 9945 KiB  
Article
Changes in the Habitat Preference of Crested Ibis (Nipponia nippon) during a Period of Rapid Population Increase
by Liming Ma, Xinhai Li, Tianqing Zhai, Yazu Zhang, Kai Song, Marcel Holyoak and Yuehua Sun
Animals 2021, 11(9), 2626; https://doi.org/10.3390/ani11092626 - 7 Sep 2021
Cited by 11 | Viewed by 4085
Abstract
The number of breeding pairs of crested ibis (Nipponia nippon) in Hanzhong, China has recovered remarkably from 2 to 511 from 1981 to 2019. Although the crested ibis has been closely monitored, the habitat preference of the bird has not been [...] Read more.
The number of breeding pairs of crested ibis (Nipponia nippon) in Hanzhong, China has recovered remarkably from 2 to 511 from 1981 to 2019. Although the crested ibis has been closely monitored, the habitat preference of the bird has not been well studied despite the extensive increase in abundance. We used nest site data from the past 39 years and 30 environmental variables to develop species distribution models for each year. We applied random forest to select important environmental variables, and used logistic regressions to quantify the changes in habitat preferences in 39 years, taking into account the effects of interaction and quadratic terms. We found that six variables had strong impacts on nest site selection. The interaction term of rice paddies and waterbodies, and the quadratic term of precipitation of the wettest quarter of the year were the most important correlates of nest presence. Human impact at nest sites changed from low to high as birds increased their use of ancestral habitats with abundant rice paddies. We concluded that during the population recovery, the crested ibises retained their dependence on wetlands, yet moved from remote areas to populated rural regions where food resources had recovered due to the ban of pesticide use. Full article
(This article belongs to the Collection Recent Advance in Wildlife Conservation)
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13 pages, 2025 KiB  
Article
Transcriptome Comparison Reveals Key Components of Nuptial Plumage Coloration in Crested Ibis
by Li Sun, Tong Zhou, Qiu-Hong Wan and Sheng-Guo Fang
Biomolecules 2020, 10(6), 905; https://doi.org/10.3390/biom10060905 - 15 Jun 2020
Cited by 7 | Viewed by 5192
Abstract
Nuptial plumage coloration is critical in the mating choice of the crested ibis. This species has a characteristic nuptial plumage that develops from the application of a black sticky substance, secreted by a patch of skin in the throat and neck region. We [...] Read more.
Nuptial plumage coloration is critical in the mating choice of the crested ibis. This species has a characteristic nuptial plumage that develops from the application of a black sticky substance, secreted by a patch of skin in the throat and neck region. We aimed to identify the genes regulating its coloring, by comparing skin transcriptomes between ibises during the breeding and nonbreeding seasons. In breeding season skins, key eumelanin synthesis genes, TYR, DCT, and TYRP1 were upregulated. Tyrosine metabolism, which is closely related to melanin synthesis, was also upregulated, as were transporter proteins belonging to multiple SLC families, which might act during melanosome transportation to keratinocytes. These results indicate that eumelanin is likely an important component of the black substance. In addition, we observed upregulation in lipid metabolism in breeding season skins. We suggest that the lipids contribute to an oil base, which imbues the black substance with water insolubility and enhances its adhesion to feather surfaces. In nonbreeding season skins, we observed upregulation in cell adhesion molecules, which play critical roles in cell interactions. A number of molecules involved in innervation and angiogenesis were upregulated, indicating an ongoing expansion of nerves and blood vessels in sampled skins. Feather β keratin, a basic component of avian feather filament, was also upregulated. These results are consistent with feather regeneration in the black skin of nonbreeding season ibises. Our results provide the first molecular evidence indicating that eumelanin is the key component of ibis coloration. Full article
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19 pages, 2720 KiB  
Article
Genetic Diversity and Differentiation at Structurally Varying MHC Haplotypes and Microsatellites in Bottlenecked Populations of Endangered Crested Ibis
by Hong Lan, Tong Zhou, Qiu-Hong Wan and Sheng-Guo Fang
Cells 2019, 8(4), 377; https://doi.org/10.3390/cells8040377 - 25 Apr 2019
Cited by 21 | Viewed by 6192
Abstract
Investigating adaptive potential and understanding the relative roles of selection and genetic drift in populations of endangered species are essential in conservation. Major histocompatibility complex (MHC) genes characterized by spectacular polymorphism and fitness association have become valuable adaptive markers. Herein we investigate the [...] Read more.
Investigating adaptive potential and understanding the relative roles of selection and genetic drift in populations of endangered species are essential in conservation. Major histocompatibility complex (MHC) genes characterized by spectacular polymorphism and fitness association have become valuable adaptive markers. Herein we investigate the variation of all MHC class I and II genes across seven populations of an endangered bird, the crested ibis, of which all current individuals are offspring of only two pairs. We inferred seven multilocus haplotypes from linked alleles in the Core Region and revealed structural variation of the class II region that probably evolved through unequal crossing over. Based on the low polymorphism, structural variation, strong linkage, and extensive shared alleles, we applied the MHC haplotypes in population analysis. The genetic variation and population structure at MHC haplotypes are generally concordant with those expected from microsatellites, underlining the predominant role of genetic drift in shaping MHC variation in the bottlenecked populations. Nonetheless, some populations showed elevated differentiation at MHC, probably due to limited gene flow. The seven populations were significantly differentiated into three groups and some groups exhibited genetic monomorphism, which can be attributed to founder effects. We therefore propose various strategies for future conservation and management. Full article
(This article belongs to the Special Issue Major Histocompatibility Complex (MHC) in Health and Disease)
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