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Keywords = Bayesian fMRI analysis

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17 pages, 1376 KB  
Article
Bayesian Depth-Wise Convolutional Neural Network Design for Brain Tumor MRI Classification
by Favour Ekong, Yongbin Yu, Rutherford Agbeshi Patamia, Xiao Feng, Qian Tang, Pinaki Mazumder and Jingye Cai
Diagnostics 2022, 12(7), 1657; https://doi.org/10.3390/diagnostics12071657 - 7 Jul 2022
Cited by 22 | Viewed by 2912
Abstract
In recent years, deep learning has been applied to many medical imaging fields, including medical image processing, bioinformatics, medical image classification, segmentation, and prediction tasks. Computer-aided detection systems have been widely adopted in brain tumor classification, prediction, detection, diagnosis, and segmentation tasks. This [...] Read more.
In recent years, deep learning has been applied to many medical imaging fields, including medical image processing, bioinformatics, medical image classification, segmentation, and prediction tasks. Computer-aided detection systems have been widely adopted in brain tumor classification, prediction, detection, diagnosis, and segmentation tasks. This work proposes a novel model that combines the Bayesian algorithm with depth-wise separable convolutions for accurate classification and predictions of brain tumors. We combine Bayesian modeling learning and Convolutional Neural Network learning methods for accurate prediction results to provide the radiologists the means to classify the Magnetic Resonance Imaging (MRI) images rapidly. After thorough experimental analysis, our proposed model outperforms other state-of-the-art models in terms of validation accuracy, training accuracy, F1-score, recall, and precision. Our model obtained high performances of 99.03% training accuracy and 94.32% validation accuracy, F1-score, precision, and recall values of 0.94, 0.95, and 0.94, respectively. To the best of our knowledge, the proposed work is the first neural network model that combines the hybrid effect of depth-wise separable convolutions with the Bayesian algorithm using encoders. Full article
(This article belongs to the Special Issue Advanced Techniques in Body Magnetic Resonance Imaging 2.0)
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22 pages, 5042 KB  
Article
A Novel Method to Use Coordinate Based Meta-Analysis to Determine a Prior Distribution for Voxelwise Bayesian Second-Level fMRI Analysis
by Hyemin Han
Mathematics 2022, 10(3), 356; https://doi.org/10.3390/math10030356 - 24 Jan 2022
Cited by 5 | Viewed by 3534
Abstract
Previous research showed that employing results from meta-analyses of relevant previous fMRI studies can improve the performance of voxelwise Bayesian second-level fMRI analysis. In this process, prior distributions for Bayesian analysis can be determined by information acquired from the meta-analyses. However, only image-based [...] Read more.
Previous research showed that employing results from meta-analyses of relevant previous fMRI studies can improve the performance of voxelwise Bayesian second-level fMRI analysis. In this process, prior distributions for Bayesian analysis can be determined by information acquired from the meta-analyses. However, only image-based meta-analysis, which is not widely accessible to fMRI researchers due to the lack of shared statistical images, was tested in the previous study, so the applicability of the prior determination method proposed by the previous study might be limited. In the present study, whether determining prior distributions based on coordinate-based meta-analysis, which is widely accessible to researchers, can also improve the performance of Bayesian analysis, was examined. Three different types of coordinate-based meta-analyses, BrainMap and Ginger ALE, and NeuroQuery, were tested as information sources for prior determination. Five different datasets addressing three task conditions, i.e., working memory, speech, and face processing, were analyzed via Bayesian analysis with a meta-analysis informed prior distribution, Bayesian analysis with a default Cauchy prior adjusted for multiple comparisons, and frequentist analysis with familywise error correction. The findings from the aforementioned analyses suggest that use of coordinate-based meta-analysis also significantly enhanced performance of Bayesian analysis as did image-based meta-analysis. Full article
(This article belongs to the Special Issue Bayesian Inference and Modeling with Applications)
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12 pages, 1278 KB  
Case Report
Microstructural Changes in Motor Functional Conversion Disorder: Multimodal Imaging Approach on a Case
by Mariachiara Longarzo, Carlo Cavaliere, Giulia Mele, Stefano Tozza, Liberatore Tramontano, Vincenzo Alfano, Marco Aiello, Marco Salvatore and Dario Grossi
Brain Sci. 2020, 10(6), 385; https://doi.org/10.3390/brainsci10060385 - 18 Jun 2020
Cited by 5 | Viewed by 4492
Abstract
Background: Functional motor conversion disorders are characterized by neurological symptoms unrelated to brain structural lesions. The present study was conducted on a woman presenting motor symptoms causing motor dysfunction, using advanced multimodal neuroimaging techniques, electrophysiological and neuropsychological assessment. Methods. The patient underwent fluorodeoxyglucose-positron [...] Read more.
Background: Functional motor conversion disorders are characterized by neurological symptoms unrelated to brain structural lesions. The present study was conducted on a woman presenting motor symptoms causing motor dysfunction, using advanced multimodal neuroimaging techniques, electrophysiological and neuropsychological assessment. Methods. The patient underwent fluorodeoxyglucose-positron emission tomography-computed tomography (FDG-PET-CT) and functional magnetic resonance imaging (fMRI) with both task and resting-state paradigms and was compared with 11 healthy matched controls. To test differences in structural parameters, Bayesian comparison was performed. To test differences in functional parameters, a first- and second-level analysis was performed in task fMRI, while a seed-to-seed analysis to evaluate the connections between brain regions and identify intersubject variations was performed in resting-state fMRI. Results. FDG-PET showed two patterns of brain metabolism, involving the cortical and subcortical structures. Regarding the diffusion data, microstructural parameters were altered for U-shape fibers for the hand and feet regions. Resting-state analysis showed hypoconnectivity between the parahippocampal and superior temporal gyrus. Neurophysiological assessment showed no alterations. Finally, an initial cognitive impairment was observed, paralleled by an anxiety and mild depressive state. Conclusions. While we confirmed no structural alterations sustaining this functional motor disorder, we report microstructural changes in sensory–motor integration for both the hand and feet regions that could functionally support clinical manifestations. Full article
(This article belongs to the Special Issue Multimodal Imaging Approach in CNS Pathologies)
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17 pages, 4719 KB  
Article
Source Localization by Entropic Inference and Backward Renormalization Group Priors
by Nestor Caticha
Entropy 2015, 17(5), 2573-2589; https://doi.org/10.3390/e17052573 - 23 Apr 2015
Cited by 2 | Viewed by 4498
Abstract
A systematic method of transferring information from coarser to finer resolution based on renormalization group (RG) transformations is introduced. It permits building informative priors in finer scales from posteriors in coarser scales since, under some conditions, RG transformations in the space of hyperparameters [...] Read more.
A systematic method of transferring information from coarser to finer resolution based on renormalization group (RG) transformations is introduced. It permits building informative priors in finer scales from posteriors in coarser scales since, under some conditions, RG transformations in the space of hyperparameters can be inverted. These priors are updated using renormalized data into posteriors by Maximum Entropy. The resulting inference method, backward RG (BRG) priors, is tested by doing simulations of a functional magnetic resonance imaging (fMRI) experiment. Its results are compared with a Bayesian approach working in the finest available resolution. Using BRG priors sources can be partially identified even when signal to noise ratio levels are up to ~ -25dB improving vastly on the single step Bayesian approach. For low levels of noise the BRG prior is not an improvement over the single scale Bayesian method. Analysis of the histograms of hyperparameters can show how to distinguish if the method is failing, due to very high levels of noise, or if the identification of the sources is, at least partially possible. Full article
(This article belongs to the Section Information Theory, Probability and Statistics)
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