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13 pages, 1588 KB  
Article
Dynamics of Fricke–Painlevé VI Surfaces
by Michel Planat, David Chester and Klee Irwin
Dynamics 2024, 4(1), 1-13; https://doi.org/10.3390/dynamics4010001 - 2 Jan 2024
Cited by 4 | Viewed by 2351
Abstract
The symmetries of a Riemann surface Σ{ai} with n punctures ai are encoded in its fundamental group π1(Σ). Further structure may be described through representations (homomorphisms) of π1 over a Lie [...] Read more.
The symmetries of a Riemann surface Σ{ai} with n punctures ai are encoded in its fundamental group π1(Σ). Further structure may be described through representations (homomorphisms) of π1 over a Lie group G as globalized by the character variety C=Hom(π1,G)/G. Guided by our previous work in the context of topological quantum computing (TQC) and genetics, we specialize on the four-punctured Riemann sphere Σ=S2(4) and the ‘space-time-spin’ group G=SL2(C). In such a situation, C possesses remarkable properties: (i) a representation is described by a three-dimensional cubic surface Va,b,c,d(x,y,z) with three variables and four parameters; (ii) the automorphisms of the surface satisfy the dynamical (non-linear and transcendental) Painlevé VI equation (or PVI); and (iii) there exists a finite set of 1 (Cayley–Picard)+3 (continuous platonic)+45 (icosahedral) solutions of PVI. In this paper, we feature the parametric representation of some solutions of PVI: (a) solutions corresponding to algebraic surfaces such as the Klein quartic and (b) icosahedral solutions. Applications to the character variety of finitely generated groups fp encountered in TQC or DNA/RNA sequences are proposed. Full article
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14 pages, 1154 KB  
Article
Identification and Effects of Skim Milk-Derived Bioactive Antihypertensive Peptides
by Fatah B. Ahtesh, Lily Stojanovska, Vijay Mishra, Osaana Donkor, Jack Feehan, Marijan Bosevski, Michael Mathai and Vasso Apostolopoulos
Biologics 2022, 2(1), 1-14; https://doi.org/10.3390/biologics2010001 - 28 Dec 2021
Cited by 3 | Viewed by 5248
Abstract
Bioactive peptides are generated during milk fermentation or enzymatic hydrolysis. Lactobacillus (L) helveticus is commonly used to produce some types of fermented milk products. Fermented milk derived bioactive peptides are known to be beneficial in human health. Anti-hypertensive peptides play a [...] Read more.
Bioactive peptides are generated during milk fermentation or enzymatic hydrolysis. Lactobacillus (L) helveticus is commonly used to produce some types of fermented milk products. Fermented milk derived bioactive peptides are known to be beneficial in human health. Anti-hypertensive peptides play a dual role in the regulation of hypertension through the production of the vasoconstrictor angiotensin II and its inactivation of the vasodilator bradykinin. MALDI MS/MS, nano-LC/MS/MS and RP-HPLC were used to isolate peptides showing angiotensin converting enzyme inhibition (ACE-I) from 12% fermented skim milk using a combination of L. helveticus and Flavourzyme®. The fermentation procedure facilitated the identification of 133 anti-hypertensive peptides and 75% short chain amino acids, and the three with the highest ACE-I activity reduced blood pressure in a rat model of hypertension. The freeze- dried extract was supplemented in rodent chow. In this study 14-week-old male spontaneously hypertensive rats were fed for 10 weeks with the identified peptides added to chow and compared to controls supplemented with skim milk powder. Blood pressure (BP) decreased significantly (p < 0.05) from 6 to 10 weeks of FS groups (120/65 mmHg) compared with the NFS control groups, where the BP increased significantly (220/150 mmHg) (p < 0.05). The F6 fraction provided bioactive peptides with stronger antihypertensive properties than other fractions. Skim milk fermented by L. helveticus and Flavourzyme® generates several bioactive peptides which have a blood pressure lowering effect in hypertensive disease. Full article
(This article belongs to the Section Protein Therapeutics)
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5 pages, 127 KB  
Article
Microsaccades: Empirical Research and Methodological Advances—Introduction to Part 1 of the Thematic Special Issue
by Susana Martinez-Conde, Ralf Engbert and Rudolf Groner
J. Eye Mov. Res. 2019, 12(6), 1-5; https://doi.org/10.16910/jemr.12.6.1 - 19 Jun 2020
Viewed by 381
Abstract
Recent technical developments and increased affordability of high-speed eye tracking devices have brought microsaccades to the forefront of research in many areas of sensory, perceptual, and cognitive processes. The present thematic issue on “Microsaccades: Empirical Research and Methodological Advances” invited authors to submit [...] Read more.
Recent technical developments and increased affordability of high-speed eye tracking devices have brought microsaccades to the forefront of research in many areas of sensory, perceptual, and cognitive processes. The present thematic issue on “Microsaccades: Empirical Research and Methodological Advances” invited authors to submit original research and reviews encompassing measurements and data analyses in fundamental, translational, and applied studies. We present the first volume of this special issue, comprising 14 articles by research teams around the world. Contributions include the characterization of fixational eye movements and saccadic intrusions in neurological impairments and in visual disease, methodological developments in microsaccade detection, the measurement of fixational eye movements in applied and ecological scenarios, and advances in the current understanding of the relationship between microsaccades and cognition. When fundamental research on microsaccades experienced a renaissance at the turn of the millennium (c.f. Martinez-Conde, Macknik, & Hubel, 2004), one could hardly have been so bold as to predict the manifold applications of research on fixational eye movements in clinic and practice. Through this great variety of areas of focus, some main topics emerge. One such theme is the applicability of microsaccade measures to neurological and visual disease. Whereas microsaccade quantifications have been largely limited to participants with intact visual and oculomotor systems, recent research has extended this interest into the realm of neural and ophthalmic impairment (see Alexander, Macknik, & Martinez-Conde, 2018, for a review). In this volume, Becker et al. analyze “Saccadic intrusions in amyotrophic lateral sclerosis (ALS)” and Kang et al. study “Fixational eye movement waveforms in amblyopia”, delving into the characteristics of fast and slow eye movements. Two other articles focus on how the degradation of visual information, which is relevant to many ophthalmic pathologies, affects microsaccadic features. Tang et al. investigate the “Effects of visual blur on microsaccades on visual exploration” and conclude that the precision of an image on the fovea plays an important role in the calibration of microsaccade amplitudes during visual scanning. Otero-Millan et al. use different kinds of visual stimuli and viewing tasks in the presence or absence of simulated scotomas, to determine the contributions of foveal and peripheral visual information to microsaccade production. They conclude that “Microsaccade generation requires a foveal anchor”. The link between microsaccadic characteristics and cognitive processes has been a mainstay of microsaccade research for almost two decades, since studies in the early 2000s connected microsaccade directions to the spatial location of covert attentional cues (Engbert & Kliegl, 2003; Hafed & Clark, 2002). In the present volume, Dalmaso et al. report that “Anticipation of cognitive conflict is reflected in microsaccades”, providing new insights about the top-down modulation of microsaccade dynamics. Ryan et al. further examine the relationship between “Microsaccades and covert attention” during the performance of a continuous, divided-attention task, and find preliminary evidence that microsaccades track the ongoing allocation of spatial attention. Krueger et al. discover that microsaccade rates modulate with visual attention demands and report that “Microsaccades distinguish looking from seeing”. Taking the ecological validity of microsaccade investigations one step further, Barnhart et al. evaluate microsaccades during the observation of magic tricks and conclude that “Microsaccades reflect the dynamics of misdirected attention in magic”. Two articles examine the role of individual differences and intraindividual variability over time on microsaccadic features. In “Reliability and correlates of intra-individual variability in the oculomotor system” Perquin and Bompas find evidence for intra-individual reliability over different time points, while cautioning that its use to classify self-reported individual differences remains unclear. Stafford et al. provide a counterpoint in “Can microsaccade rate predict drug response?” by supporting the use of microsaccade occurrence as both a trait measure of individual differences and as a state measure of response to caffeine administration. Methodological and technical advances are the subjects of three papers in this volume. In “Motion tracking of iris features to detect small eye movements” Chaudhary and Pelz describe a new video-based eye tracking methodology that relies on higher-order iris texture features, rather than on lower-order pupil center and corneal reflection features, to detect microsaccades with high confidence. Munz et al. present an open source visual analytics system called “VisME: Visual microsaccades explorer” that allows users to interactively vary microsaccade filter parameters and evaluate the resulting effects on microsaccade behavior, with the goal of promoting reproducibility in data analyses. In “What makes a microsaccade? A review of 70 years research prompts a new detection method” Hauperich et al. review the microsaccade properties reported between the 1940s and today, and use the stated range of parameters to develop a novel method of microsaccade detection. Lastly, Alexander et al. switch the focus from the past of microsaccade research to its future, by discussing the recent and upcoming applications of fixational eye movements to ecologically-valid and real-world scenarios. Their review “Microsaccades in applied environments: real-world applications of fixational eye movement measurements” covers the possibilities and challenges of taking microsaccade measurements out of the lab and into the field. Microsaccades have engaged the interest of scientists from different backgrounds and disciplines for many decades and will certainly continue to do so. One reason for this fascination might be microsaccades’ role as a link between basic sensory processes and high-level cognitive phenomena, making them an attractive focus of interdisciplinary research and transdisciplinary applications. Thus, research on microsaccades will not only endure, but keep evolving as the present knowledge base expands. Part 2 of the special issue on microsaccades is already in progress with articles currently under review and will be published in 2021. Full article
51 pages, 410 KB  
Article
Ab-Initio Calculations of Level Energies, Oscillator Strengths and Radiative Rates for E1 Transitions in Beryllium-Like Iron
by Ahmed Abou El-Maaref, Stefan Schippers and Alfred Müller
Atoms 2015, 3(1), 2-52; https://doi.org/10.3390/atoms3010002 - 20 Jan 2015
Cited by 8 | Viewed by 5608
Abstract
In the present work, energy levels, oscillator strengths, radiative rates and wavelengths of Be-like iron (Fe\(^{22+}\)) from ab-initio calculations using the multiconfiguration Dirac-Hartree-Fock method are presented. These quantities have been calculated for a set of configurations in the general form \(1s^2\,nl\,n'l'\) where [...] Read more.
In the present work, energy levels, oscillator strengths, radiative rates and wavelengths of Be-like iron (Fe\(^{22+}\)) from ab-initio calculations using the multiconfiguration Dirac-Hartree-Fock method are presented. These quantities have been calculated for a set of configurations in the general form \(1s^2\,nl\,n'l'\) where \(n=2,3\) and \(\,n'=2,3,4,5\) and \(l=s,p,d\) and \(\,l'=s, p, d, f, g\). In addition, excitations of up to four electrons, including core-electron excitations, have been considered to improve the quality of the wave functions. This study comprises an extensive set of E1 transition rates between states with different \(J\). The present results are compared with the available experimental and theoretical data. Full article
(This article belongs to the Special Issue Atomic Data for Tungsten)
35 pages, 1828 KB  
Review
Regulation Systems of Bacteria such as Escherichia coli in Response to Nutrient Limitation and Environmental Stresses
by Kazuyuki Shimizu
Metabolites 2014, 4(1), 1-35; https://doi.org/10.3390/metabo4010001 - 30 Dec 2013
Cited by 149 | Viewed by 21229
Abstract
An overview was made to understand the regulation system of a bacterial cell such as Escherichia coli in response to nutrient limitation such as carbon, nitrogen, phosphate, sulfur, ion sources, and environmental stresses such as oxidative stress, acid shock, heat shock, and solvent [...] Read more.
An overview was made to understand the regulation system of a bacterial cell such as Escherichia coli in response to nutrient limitation such as carbon, nitrogen, phosphate, sulfur, ion sources, and environmental stresses such as oxidative stress, acid shock, heat shock, and solvent stresses. It is quite important to understand how the cell detects environmental signals, integrate such information, and how the cell system is regulated. As for catabolite regulation, F1,6B P (FDP), PEP, and PYR play important roles in enzyme level regulation together with transcriptional regulation by such transcription factors as Cra, Fis, CsrA, and cAMP-Crp. αKG plays an important role in the coordinated control between carbon (C)- and nitrogen (N)-limitations, where αKG inhibits enzyme I (EI) of phosphotransferase system (PTS), thus regulating the glucose uptake rate in accordance with N level. As such, multiple regulation systems are co-ordinated for the cell synthesis and energy generation against nutrient limitations and environmental stresses. As for oxidative stress, the TCA cycle both generates and scavenges the reactive oxygen species (ROSs), where NADPH produced at ICDH and the oxidative pentose phosphate pathways play an important role in coping with oxidative stress. Solvent resistant mechanism was also considered for the stresses caused by biofuels and biochemicals production in the cell. Full article
(This article belongs to the Special Issue Response to Environment and Stress Metabolism)
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10 pages, 434 KB  
Article
Control of Visual Selection During Visual Search in the Human Brain
by Manuel C. Olma, Tobias H. Donner and Stephan A. Brandt
J. Eye Mov. Res. 2007, 1(1), 1-10; https://doi.org/10.16910/jemr.1.1.4 - 16 Nov 2007
Viewed by 301
Abstract
How do we find a target object in a cluttered visual scene? Targets carrying unique salient features can be found in parallel without directing attention, whereas targets defined by feature conjunctions or non-salient features need to be scrutinized in a serial attentional process [...] Read more.
How do we find a target object in a cluttered visual scene? Targets carrying unique salient features can be found in parallel without directing attention, whereas targets defined by feature conjunctions or non-salient features need to be scrutinized in a serial attentional process in order to be identified. In this article, we review a series of experiments in which we used fMRI to probe the neural basis of this active search process in the human brain. In all experiments, we compared the fMRI signal between a difficult and an easy visual search (each performed without eye movements) in order to isolate neural activity reflecting the search process from other components such as stimulus responses and movementrelated activity. The difficult search was either a conjunction search or a hard feature search and compared with an easy feature search, matched in visual stimulation and motor requirements. During both, the conjunction search and the hard feature search the frontal eye fields (FEF) and three parietal regions located in the intraparietal sulcus (IPS) were differentially activated: the anterior and posterior part of the intraparietal sulcus (AIPS, PIPS) as well as the junction of the intraparietal with the transverse occipital sulcus (IPTO). Only in PIPS, the modulation strength was most indistinguishable between conjunction and hard feature search. In a further experiment we showed that AIPS and IPTO are involved in visual conjunction search even in the absence of distractors; by contrast, the involvement of PIPS seems to depend on the presence of distractors. Taken together, these findings from these experiments demonstrate that all four key nodes of the human ’frontoparietal attention network’ are generally engaged in the covert selection process of visual search. But they also suggest that these areas play differential roles, perhaps reflecting different sub-processes in active search. We conclude by discussing a number of such sub-processes, such as the direction of spatial attention, visual feature binding, and the active suppression of distractors. Full article
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