Associations of rs55829688 and rs145204276 Promoter Variants with lncRNA GAS5 Expression in AML: Prognostic Significance and Functional Analysis
Abstract
1. Introduction
2. Materials and Methods
2.1. Cohort Clinical Information and Therapy Protocol
2.2. GAS5 Promoter Region Genotyping
2.3. Functional In Vitro Study
2.4. In Silico Analysis of GAS5 rs55829688 and rs145204276 Promoter Variants
2.5. Statistical Analysis
3. Results
3.1. Associations of GAS5 Promoter Variants and Expression Levels in AML Patients
3.2. Association of GAS5 Promoter Variants with the Clinical Features and Prognosis of AML
3.3. The Roles of GAS5 Promoter Variants in the Prognosis of Intermediate-Risk Patients
3.4. Functional Analysis of GAS5 Promoter Variant Constructs in K562 Cells
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
| AML | Acute myeloid leukemia |
| ELN | European LeukemiaNet |
| lncRNA | long non-coding RNA |
| TFBS | Transcription factor binding site |
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| Parameter | rs55829688 | rs145204276 | |||||
|---|---|---|---|---|---|---|---|
| Total n = 75 | TT n = 42 | TC or CC n = 33 | p | ins/ins n = 53 | ins/del or del/del, n = 22 | p | |
| Sex | 0.646 | 0.265 | |||||
| Male (%) | 42 | 25 (60) | 17 (40) | 27 (36) | 15 (20) | ||
| Female (%) | 33 | 17 (52) | 16 (48) | 26 (35) | 7 (9) | ||
| Age, years median (range) | 50 (18–62) | 49 (18–61) | 0.399 | 50 (18–62) | 49.5 (18–61) | 0.798 | |
| WBC count, ×109/L median (range) | 16.25 (1–258.8) | 19 (1.4–348.8) | 0.509 | 20.9 (1.1–348.8) | 4 (1–183.7) | 0.22 | |
| Hemoglobin (g/L) median (range) | 97.5 (2–166) | 98 (65–153) | 0.517 | 97 (71–153) | 102.5 (2–166) | 0.514 | |
| Platelets (×109/L) median (range) | 53.5 (2–216) | 49 (1–169) | 0.736 | 42 (1–216) | 79 (8–180) | 0.074 | |
| LDH (U/L) median (range) | 212 (175–4169) | 357 (175–2147) | 0.718 | 357 (175–4169) | 175 (175–1314) | 0.097 | |
| Peripheral blood blast (%) median (range) | 16 (0–98) | 22 (0–97) | 0.413 | 20 (0–97) | 15 (0–98) | 0.167 | |
| Bone marrow blasts (%) median (range) | 59.5 (20–97) | 70 (24–94) | 0.083 | 69 (20–97) | 58 (21–87) | 0.229 | |
| FAB (%) | 0.286 | 0.09 | |||||
| M0 | 6 | 4 (67) | 2 (33) | 3 (50) | 3 (50) | ||
| M1 | 9 | 5 (56) | 4 (44) | 4 (44) | 5 (56) | ||
| M2 | 19 | 8 (42) | 11 (58) | 12 (63) | 7 (37) | ||
| M4 | 27 | 19 (70) | 8 (30) | 23 (85) | 4 (15) | ||
| M5 | 14 | 6 (43) | 8 (57) | 11 (78) | 3 (22) | ||
| Karyotype (%) | 0.533 | 1.0 | |||||
| Normal Karyotype (NK) | 36 | 22 (61) | 14 (39) | 25 (69) | 11 (31) | ||
| Other | 39 | 20 (51) | 19 (49) | 28 (61) | 11 (39) | ||
| NPM1 in NK (%) | 0.303 | 0.722 | |||||
| Present | 13 | 6 (46) | 7 (54) | 10 (77) | 3 (23) | ||
| Absent | 23 | 16 (69) | 7 (31) | 15 (55) | 8 (45) | ||
| FLT3 in NK (%) | 0.430 | 0.834 | |||||
| Present | 9 | 4 (44) | 5 (56) | 7 (78) | 2 (22) | ||
| Absent | 27 | 18 (75) | 9 (25) | 18 (75) | 9 (25) | ||
| ELN risk group (%) | 0.018 | 0.521 | |||||
| Favorable | 14 | 8 (57) | 6 (43) | 10 (72) | 4 (28) | ||
| Intermediate | 41 | 28 (68) | 13 (32) | 27 (65) | 14 (35) | ||
| Adverse | 20 | 6 (30) | 14 (70) | 16 (70) | 4 (30) | ||
| Complete remission (%) | 0.608 | 0.906 | |||||
| Success | 40 | 16 (40) | 24 (60) | 29 (72) | 11 (28) | ||
| Failure | 35 | 17 (48) | 18 (52) | 24 (69) | 11 (31) | ||
| Relapse (%) | 0.846 | 0.302 | |||||
| Yes | 22 | 14 (64) | 8 (36) | 14 (64) | 8 (36) | ||
| No | 18 | 10 (55) | 8 (45) | 15 (83) | 3 (17) | ||
| Transcription Factor | Effect on TFBS (Fabian) | Expression Level in Blood (TPM) |
|---|---|---|
| SP4 | −0.4769 | Low (1.304) |
| YY1 | −0.3370 | Low (14.68) |
| RUNX3 | −0.3138 | High (33.07) |
| NR2F1 | −0.1234 | Low (<1) |
| EGR1 | −0.1127 | Low (2.938) |
| NFIC | −0.0727 | Low (5.630) |
| STAT3 | 0.0569 | High (101.6) |
| E2F4 | 0.0876 | High (62.69) |
| ARNT | 0.1155 | Low (17.18) |
| GMEB1 | 0.1798 | Low (3.975) |
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Pavlovic, D.; Tosic, N.; Curic, I.; Ristivojevic, B.; Pravdic, Z.; Suvajdzic Vukovic, N.; Pavlovic, S.; Zukic, B.; Gasic, V. Associations of rs55829688 and rs145204276 Promoter Variants with lncRNA GAS5 Expression in AML: Prognostic Significance and Functional Analysis. Biomedicines 2026, 14, 504. https://doi.org/10.3390/biomedicines14030504
Pavlovic D, Tosic N, Curic I, Ristivojevic B, Pravdic Z, Suvajdzic Vukovic N, Pavlovic S, Zukic B, Gasic V. Associations of rs55829688 and rs145204276 Promoter Variants with lncRNA GAS5 Expression in AML: Prognostic Significance and Functional Analysis. Biomedicines. 2026; 14(3):504. https://doi.org/10.3390/biomedicines14030504
Chicago/Turabian StylePavlovic, Djordje, Natasa Tosic, Isidora Curic, Bojan Ristivojevic, Zlatko Pravdic, Nada Suvajdzic Vukovic, Sonja Pavlovic, Branka Zukic, and Vladimir Gasic. 2026. "Associations of rs55829688 and rs145204276 Promoter Variants with lncRNA GAS5 Expression in AML: Prognostic Significance and Functional Analysis" Biomedicines 14, no. 3: 504. https://doi.org/10.3390/biomedicines14030504
APA StylePavlovic, D., Tosic, N., Curic, I., Ristivojevic, B., Pravdic, Z., Suvajdzic Vukovic, N., Pavlovic, S., Zukic, B., & Gasic, V. (2026). Associations of rs55829688 and rs145204276 Promoter Variants with lncRNA GAS5 Expression in AML: Prognostic Significance and Functional Analysis. Biomedicines, 14(3), 504. https://doi.org/10.3390/biomedicines14030504

