Gene Polymorphisms of Parkinson’s Disease Risk Locus and Idiopathic REM Sleep Behavior Disorder
Abstract
:1. Introduction
2. Materials and Methods
2.1. Study Design and Workflow
2.2. Study Participants
2.3. Demographic Information and Clinical Assessment Scales
2.4. Polysomnography Technique
2.5. DNA Extraction, SNPs Selection, and Gene Expression Analysis
2.6. Statistical Analysis
3. Results
3.1. Demographic and Clinical Characteristics of Participants
3.2. PPMI-Derived Genes Enriched in the PD Pathway
3.3. Association of the Two Selected SNPs with iRBD
3.4. The Overlap of SNPs Between Different Groups
3.5. eQTL Insights into Genotype-Dependent Gene Expression
3.6. Genotype-Specific Impacts on iRBD-Related Clinical and Sleep Parameters
3.7. ROC Curve and Survival Analysis of SNPs in iRBD Diagnosis and Progression
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
AASM | American Academy of Sleep Medicine |
AHI | apnea-hypopnea index |
AUC | area under the curve |
BrainEAC | Brain eQTL Almanac |
ECG | electrocardiogram |
EEG | electroencephalogram |
EMG | electromyogram |
EOG | electrooculogram |
EOPD | early-onset PD |
eQTL | expression quantitative trait loci |
GO | Gene Ontology |
GTEx | Genotype-Tissue Expression |
GWAS | genome-wide association study |
HAMA | Hamilton Anxiety Scale |
HAMD | Hamilton Depression Scale |
HC | healthy control |
HWE | Hardy–Weinberg equilibrium |
H-Y | Hoehn-Yahr |
iRBD | Idiopathic rapid eye movement sleep behavior disorder |
ISCD | International Classification of Sleep Disorders |
KEGG | Kyoto Encyclopedia of Genes and Genomes |
LEDD | levodopa equivalent daily dose |
MDS-UPDRS | Movement Disorder Society-sponsored revision of the Unified Parkinson’s Disease Rating Scale |
MMSE | Mini-Mental State Examination |
MoCA | Montreal Cognitive Assessment |
NMSQ | Non-Motor Symptom Questionnaire |
PD | Parkinson’s disease |
PLM | periodic limb movement |
PPMI | Parkinson’s Progression Markers Initiative |
PSG | polysomnography |
RBD | rapid eye movement sleep behavior disorder |
RBDSQ | REM Sleep Behavior Disorder Screening Questionnaire |
ROC | Receiver operating characteristic |
SCOPA-AUT | Scale for Outcomes in PD-Autonomic |
SNPs | single-nucleotide polymorphisms |
SS-16 | Sniffin’ Sticks 16-item odor identification test. |
References
- Dauvilliers, Y.; Schenck, C.H.; Postuma, R.B.; Iranzo, A.; Luppi, P.H.; Plazzi, G.; Montplaisir, J.; Boeve, B. REM sleep behaviour disorder. Nat. Rev. Dis. Primers 2018, 4, 19. [Google Scholar] [CrossRef] [PubMed]
- Antelmi, E.; Lippolis, M.; Biscarini, F.; Tinazzi, M.; Plazzi, G. REM sleep behavior disorder: Mimics and variants. Sleep Med. Rev. 2021, 60, 101515. [Google Scholar] [CrossRef] [PubMed]
- Miglis, M.G.; Adler, C.H.; Antelmi, E.; Arnaldi, D.; Baldelli, L.; Boeve, B.F.; Cesari, M.; Dall’Antonia, I.; Diederich, N.J.; Doppler, K.; et al. Biomarkers of conversion to alpha-synucleinopathy in isolated rapid-eye-movement sleep behavior disorder. Lancet Neurol. 2021, 20, 671–684. [Google Scholar] [CrossRef] [PubMed]
- Postuma, R.B.; Iranzo, A.; Hu, M.; Hogl, B.; Boeve, B.F.; Manni, R.; Oertel, W.H.; Arnulf, I.; Ferini-Strambi, L.; Puligheddu, M.; et al. Risk and predictors of dementia and parkinsonism in idiopathic REM sleep behavior disorder: A multicentre study. Brain 2019, 142, 744–759. [Google Scholar] [CrossRef]
- Dauvilliers, Y.; Postuma, R.; Ferini-Strambi, L.; Arnulf, I.; Högl, B.; Manni, R.; Miyamoto, T.; Oertel, W.; Fantini, M.L.; Puligheddu, M.; et al. Family history of idiopathic REM behavior disorder: A multicenter case-control study. Neurology 2013, 80, 2233–2235. [Google Scholar] [CrossRef]
- Gan-Or, Z.; Mirelman, A.; Postuma, R.B.; Arnulf, I.; Bar-Shira, A.; Dauvilliers, Y.; Desautels, A.; Gagnon, J.; Leblond, C.S.; Frauscher, B.; et al. GBA mutations are associated with Rapid Eye Movement Sleep Behavior Disorder. Ann. Clin. Transl. Neurol. 2015, 2, 941–945. [Google Scholar] [CrossRef]
- Krohn, L.; Ozturk, T.N.; Vanderperre, B.; Ouled Amar Bencheikh, B.; Ruskey, J.A.; Laurent, S.B.; Spiegelman, D.; Postuma, R.B.; Arnulf, I.; Hu, M.T.M.; et al. Genetic, Structural, and Functional Evidence Link TMEM175 to Synucleinopathies. Ann. Neurol. 2020, 87, 139–153. [Google Scholar] [CrossRef]
- Pont-Sunyer, C.; Iranzo, A.; Gaig, C.; Fernandez-Arcos, A.; Vilas, D.; Valldeoriola, F.; Compta, Y.; Fernández-Santiago, R.; Fernández, M.; Bayés, A.; et al. Sleep Disorders in Parkinsonian and Nonparkinsonian LRRK2 Mutation Carriers. PLoS ONE 2015, 10, e0132368. [Google Scholar] [CrossRef]
- Gan-Or, Z.; Ruskey, J.A.; Spiegelman, D.; Arnulf, I.; Dauvilliers, Y.; Hogl, B.; Monaca-Charley, C.; Postuma, R.B.; Montplaisir, J.Y.; Rouleau, G.A. Heterozygous PINK1 p.G411S in rapid eye movement sleep behaviour disorder. Brain 2017, 140, e32. [Google Scholar] [CrossRef]
- Krohn, L.; Heilbron, K.; Blauwendraat, C.; Reynolds, R.H.; Yu, E.; Senkevich, K.; Rudakou, U.; Estiar, M.A.; Gustavsson, E.K.; Brolin, K.; et al. Genome-wide association study of REM sleep behavior disorder identifies polygenic risk and brain expression effects. Nat. Commun. 2022, 13, 7496. [Google Scholar] [CrossRef]
- Krohn, L.; Wu, R.Y.J.; Heilbron, K.; Ruskey, J.A.; Laurent, S.B.; Blauwendraat, C.; Alam Bsc, A.; Arnulf, I.; Mbbs, F.M.T.M.H.; Dauvilliers, Y.; et al. Fine-Mapping of SNCA in Rapid Eye Movement Sleep Behavior Disorder and Overt Synucleinopathies. Ann. Neurol. 2020, 87, 584–598. [Google Scholar] [CrossRef] [PubMed]
- Postuma, R.B.; Berg, D.; Stern, M.; Poewe, W.; Olanow, C.W.; Oertel, W.; Obeso, J.; Marek, K.; Litvan, I.; Lang, A.E.; et al. MDS clinical diagnostic criteria for Parkinson’s disease. Mov. Disord. 2015, 30, 1591–1601. [Google Scholar] [CrossRef] [PubMed]
- Goetz, C.G.; Poewe, W.; Rascol, O.; Sampaio, C.; Stebbins, G.T.; Counsell, C.; Giladi, N.; Holloway, R.G.; Moore, C.G.; Wenning, G.K.; et al. Movement Disorder Society Task Force report on the Hoehn and Yahr staging scale: Status and recommendations. Mov. Disord. 2004, 19, 1020–1028. [Google Scholar] [CrossRef]
- Berry, R.B.; Brooks, R.; Gamaldo, C.; Harding, S.M.; Lloyd, R.M.; Quan, S.F.; Troester, M.T.; Vaughn, B.V. AASM Scoring Manual Updates for 2017 (Version 2.4). J. Clin. Sleep Med. 2017, 13, 665–666. [Google Scholar] [CrossRef]
- Gan-Or, Z.; Girard, S.L.; Noreau, A.; Leblond, C.S.; Gagnon, J.F.; Arnulf, I.; Mirarchi, C.; Dauvilliers, Y.; Desautels, A.; Mitterling, T.; et al. Parkinson’s Disease Genetic Loci in Rapid Eye Movement Sleep Behavior Disorder. J. Mol. Neurosci. 2015, 56, 617–622. [Google Scholar] [CrossRef]
- Krohn, L.; Ruskey, J.A.; Rudakou, U.; Leveille, E.; Asayesh, F.; Hu, M.T.M.; Arnulf, I.; Dauvilliers, Y.; Högl, B.; Stefani, A.; et al. GBA variants in REM sleep behavior disorder: A multicenter study. Neurology 2020, 95, e1008–e1016. [Google Scholar] [CrossRef]
- Decet, M.; Soukup, S.F. Endophilin-A/SH3GL2 calcium switch for synaptic autophagy induction is impaired by a Parkinson’s risk variant. Autophagy 2023, 20, 925–927. [Google Scholar] [CrossRef]
- Nguyen, M.; Wong, Y.C.; Ysselstein, D.; Severino, A.; Krainc, D. Synaptic, Mitochondrial, and Lysosomal Dysfunction in Parkinson’s Disease. Trends Neurosci. 2019, 42, 140–149. [Google Scholar] [CrossRef]
- Chang, D.; Nalls, M.; Hallgrímsdóttir, I.; Hunkapiller, J.; van der Brug, M.; Cai, F.; International Parkinson’s Disease Genomics Consortium; 23andMe Research Team; Kerchner, G.A.; Ayalon, G.; et al. A meta-analysis of genome-wide association studies identifies 17 new Parkinson’s disease risk loci. Nat. Genet. 2017, 49, 1511–1516. [Google Scholar] [CrossRef]
- Nalls, M.; Blauwendraat, C.; Vallerga, C.; Heilbron, K.; Bandres-Ciga, S.; Chang, D.; Tan, M.; Kia, D.A.; Noyce, A.J.; Xue, A.; et al. Identification of novel risk loci, causal insights, and heritable risk for Parkinson’s disease: A meta-analysis of genome-wide association studies. Lancet Neurol. 2019, 18, 1091–1102. [Google Scholar] [CrossRef]
- Jimenez-Jimenez, F.J.; Alonso-Navarro, H.; Garcia-Martin, E.; Agundez, J.A. COMT gene and risk for Parkinson’s disease: A systematic review and meta-analysis. Pharmacogenetics Genom. 2014, 24, 331–339. [Google Scholar] [CrossRef]
- Xiao, Q.; Qian, Y.; Liu, J.; Xu, S.; Yang, X. Roles of functional catechol-O-methyltransferase genotypes in Chinese patients with Parkinson’s disease. Transl. Neurodegener. 2017, 6, 11. [Google Scholar] [CrossRef] [PubMed]
- Shen, J.; Wang, Q.; Lu, F.; Xu, H.; Wang, P.; Feng, Y. Prognostic and immunomodulatory roles of schizophrenia-associated genes HTR2A, COMT, and PRODH in pan-cancer analysis and glioma survival prediction model. Front. Immunol. 2023, 14, 1201252. [Google Scholar] [CrossRef] [PubMed]
- Anna, H.W.; Chiu-Chen, T.; David, V.D.B.; Mimi, C.Y.J.C.R. Tea intake, COMT genotype, and breast cancer in Asian-American women. Cancer Res. 2003, 63, 7526–7529. [Google Scholar]
- Jiao, M.; Pirozzi, C.J.; Yu, C.; Bao, X.; Hu, M.; Pan, D.; Littleton, S.; Reynolds, N.; Saban, D.R.; Li, F.; et al. Targeting Catechol-O-Methyltransferase Induces Mitochondrial Dysfunction and Enhances the Efficacy of Radiotherapy in Glioma. Cancer Res. 2024, 84, 3640–3656. [Google Scholar] [CrossRef]
- Wang, J.; Xu, H.; Wang, D.; Wei, G.; Zhou, H.; Wang, L.; Zhou, Y.; Zhang, X. The interactive effect of genetic polymorphisms of IL-10 and COMT on cognitive function in schizophrenia. J. Psychiatr. Res. 2021, 136, 501–507. [Google Scholar] [CrossRef]
HC | RBD | PD | p Value | |
---|---|---|---|---|
(n = 189) | (n = 62) | (n = 292) | ||
Age (y) | 62.77 ± 8.08 | 63.11 ± 8.72 | 63.27 ± 8.85 | 0.806 |
Sex, n (%) | ||||
Male | 112 (59.26%) | 39 (62.90%) | 156 (53.42%) | 0.254 |
Female | 77 (40.74%) | 23 (37.10%) | 136 (46.58%) | |
Disease duration (y) | 4.72 ± 4.63 | 3.95 ± 5.27 | 0.324 | |
Mild PD, n (%) | - | - | 182 (73.68%) | |
LEDD | - | - | 381.23 ± 271.34 | |
H-Y stage | - | - | 1.75 ± 0.87 | |
MDS-UPDRS III | - | - | 28.17 ± 15.74 | |
MDS-UPDRS II | - | 1.36 ± 2.70 | 11.43 ± 6.49 | <0.001 |
RBDSQ | 0.53 ± 0.92 | 8.52 ± 2.30 | 4.54 ± 3.48 | <0.001 |
MMSE | 28.38 ± 1.89 | 28.32 ± 2.08 | 27.16 ± 2.97 | <0.001 |
MoCA | 26.65 ± 3.76 | 25.96 ± 2.96 | 22.98 ± 4.43 | <0.001 |
HAMA | 1.37 ± 1.71 | 5.95 ± 4.08 | 7.91 ± 7.32 | <0.001 |
HAMD | 1.35 ± 1.80 | 4.13 ± 4.74 | 5.02 ± 5.32 | <0.001 |
SS-16 | 10.84 ± 2.99 | 7.70 ± 3.26 | 7.18 ± 3.18 | <0.001 |
SCOPA-AUT | 2.05 ± 2.46 | 7.31 ± 4.99 | 11.02 ± 7.72 | <0.001 |
NMSQ | 1.72 ± 1.91 | 7.28 ± 3.61 | 8.06 ± 4.24 | <0.001 |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2025 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Share and Cite
Zhong, M.; Jiao, Y.; Zhao, A.; Niu, M.; Ran, J.; Liu, J.; Li, Y. Gene Polymorphisms of Parkinson’s Disease Risk Locus and Idiopathic REM Sleep Behavior Disorder. Biomedicines 2025, 13, 788. https://doi.org/10.3390/biomedicines13040788
Zhong M, Jiao Y, Zhao A, Niu M, Ran J, Liu J, Li Y. Gene Polymorphisms of Parkinson’s Disease Risk Locus and Idiopathic REM Sleep Behavior Disorder. Biomedicines. 2025; 13(4):788. https://doi.org/10.3390/biomedicines13040788
Chicago/Turabian StyleZhong, Min, Yang Jiao, Aonan Zhao, Mengyue Niu, Jinjun Ran, Jun Liu, and Yuanyuan Li. 2025. "Gene Polymorphisms of Parkinson’s Disease Risk Locus and Idiopathic REM Sleep Behavior Disorder" Biomedicines 13, no. 4: 788. https://doi.org/10.3390/biomedicines13040788
APA StyleZhong, M., Jiao, Y., Zhao, A., Niu, M., Ran, J., Liu, J., & Li, Y. (2025). Gene Polymorphisms of Parkinson’s Disease Risk Locus and Idiopathic REM Sleep Behavior Disorder. Biomedicines, 13(4), 788. https://doi.org/10.3390/biomedicines13040788