Genome-Wide Identification and Expression Profile Analysis of the NF-Y Transcription Factor Gene Family in Petunia hybrida
Abstract
:1. Introduction
2. Results
2.1. Identification of the NF-Y Family Members
2.2. Multiple Alignment and Conserved Motifs of NF-Y Proteins
2.3. Gene Structures and Conserved Motifs of PhNF-Y Members
2.4. miRNA Target Site Prediction and Validation
2.5. Expression Profiles of the PhNF-Ys in Different Tissues
2.6. Expression Profiles of the PhNF-Ys under Abiotic Stress
3. Discussion
4. Materials and Methods
4.1. Identification, Alignments, and Phylogenetic Analysis of NF-Y Members
4.2. Conserved Motifs and Gene Structure Analyses
4.3. miRNA Target Site Prediction
4.4. Plant Material, Tissue, and Stress Treatment
4.5. Transcriptome Data Analysis
Supplementary Materials
Author Contributions
Funding
Conflicts of Interest
References
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Gene ID | Gene Name | mRNA Length (bp) | No. of Introns | Peptide Residues (aa) | MW (kDa) | pI |
---|---|---|---|---|---|---|
Peaxi162Scf00004g02521 | PhNF-YA1 | 933 | 4 | 310 | 33.91 | 7.34 |
Peaxi162Scf00339g00512 | PhNF-YA2 | 957 | 4 | 312 | 34.05 | 9.85 |
Peaxi162Scf00038g01819 | PhNF-YA3 | 1065 | 4 | 327 | 36.13 | 9.85 |
Peaxi162Scf00267g00038 | PhNF-YA4 | 792 | 4 | 286 | 31.70 | 9.37 |
Peaxi162Scf00953g00217 | PhNF-YA5 | 861 | 5 | 298 | 33.54 | 9.33 |
Peaxi162Scf00003g04130 | PhNF-YA6 | 585 | 2 | 354 | 39.76 | 6.94 |
Peaxi162Scf00498g00617 | PhNF-YA7 | 897 | 5 | 318 | 34.72 | 10.04 |
Peaxi162Scf00809g00019 | PhNF-YA8 | 987 | 4 | 263 | 29.51 | 9.93 |
Peaxi162Scf00032g00323 | PhNF-YA9 | 939 | 4 | 296 | 33.26 | 7.47 |
Peaxi162Scf00211g00239 | PhNF-YA10 | 888 | 6 | 194 | 22.19 | 10.39 |
Peaxi162Scf00195g00082 | PhNF-YB1 | 492 | 3 | 163 | 17.54 | 5.32 |
Peaxi162Scf00146g01325 | PhNF-YB2 | 420 | 2 | 140 | 15.58 | 5.29 |
Peaxi162Scf00047g02011 | PhNF-YB3 | 606 | 0 | 201 | 20.52 | 6.68 |
Peaxi162Scf00037g00085 | PhNF-YB4 | 423 | 0 | 140 | 15.90 | 4.56 |
Peaxi162Scf00534g00022 | PhNF-YB5 | 420 | 0 | 139 | 15.71 | 4.89 |
Peaxi162Scf00827g00055 | PhNF-YB6 | 642 | 0 | 213 | 23.69 | 5.10 |
Peaxi162Scf00525g00067 | PhNF-YB7 | 696 | 0 | 231 | 26.03 | 6.95 |
Peaxi162Scf00208g00014 | PhNF-YB8 | 534 | 3 | 177 | 19.36 | 5.73 |
Peaxi162Scf00139g00134 | PhNF-YB9 | 681 | 1 | 226 | 25.43 | 6.79 |
Peaxi162Scf00005g00493 | PhNF-YB10 | 546 | 4 | 181 | 19.68 | 6.79 |
Peaxi162Scf00067g00163 | PhNF-YB11 | 501 | 0 | 166 | 18.71 | 8.06 |
Peaxi162Scf00399g00108 | PhNF-YB12 | 510 | 1 | 169 | 19.32 | 6.94 |
Peaxi162Scf01006g00035 | PhNF-YB13 | 588 | 0 | 195 | 21.66 | 6.54 |
Peaxi162Scf00089g00023 | PhNF-YC1 | 732 | 0 | 243 | 26.20 | 5.03 |
Peaxi162Scf00134g02029 | PhNF-YC2 | 873 | 1 | 291 | 32.20 | 6.08 |
Peaxi162Scf00128g00124 | PhNF-YC3 | 513 | 0 | 170 | 18.04 | 4.25 |
Peaxi162Scf00102g01519 | PhNF-YC4 | 327 | 1 | 108 | 11.92 | 10.25 |
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Wei, Q.; Wen, S.; Lan, C.; Yu, Y.; Chen, G. Genome-Wide Identification and Expression Profile Analysis of the NF-Y Transcription Factor Gene Family in Petunia hybrida. Plants 2020, 9, 336. https://doi.org/10.3390/plants9030336
Wei Q, Wen S, Lan C, Yu Y, Chen G. Genome-Wide Identification and Expression Profile Analysis of the NF-Y Transcription Factor Gene Family in Petunia hybrida. Plants. 2020; 9(3):336. https://doi.org/10.3390/plants9030336
Chicago/Turabian StyleWei, Qian, Shiyun Wen, Chuying Lan, Yixun Yu, and Guoju Chen. 2020. "Genome-Wide Identification and Expression Profile Analysis of the NF-Y Transcription Factor Gene Family in Petunia hybrida" Plants 9, no. 3: 336. https://doi.org/10.3390/plants9030336