SNP Diversity and Genetic Structure of “Rogosija”, an Old Western Balkan Durum Wheat Collection
Abstract
1. Introduction
2. Results
2.1. Morphological Diversity in Western Balkan Durum Accessions
2.2. SNP Diversity in Western Balkan Durum Accessions
2.3. Relationships between Rogosija Durum Clusters and Eco-geographic Conditions
3. Discussion
4. Materials and Methods
4.1. Plant Material and Morphological Trait Characterization
4.2. DNA Extraction and SNP Genotyping
4.3. Genetic Diversity Analysis
4.4. Eco-Geographic Profile of the Germplasm Collection
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Chromosome | Nei’s Gene Diversity | MAF |
---|---|---|
1A | 0.361 | 0.149 |
2A | 0.338 | 0.136 |
3A | 0.327 | 0.136 |
4A | 0.353 | 0.155 |
5A | 0.328 | 0.118 |
6A | 0.331 | 0.133 |
7A | 0.328 | 0.117 |
A-Genome | 0.338 | 0.135 |
1B | 0.345 | 0.149 |
2B | 0.352 | 0.136 |
3B | 0.368 | 0.134 |
4B | 0.339 | 0.159 |
5B | 0.313 | 0.136 |
6B | 0.355 | 0.157 |
7B | 0.331 | 0.116 |
B-Genome | 0.343 | 0.141 |
Whole Genome | 0.341 | 0.138 |
Source of Variation | df | SS | MS | Est. Var. | % | p Values |
---|---|---|---|---|---|---|
Among clusters | 1 | 6722.42 | 6722.42 | 194.23 | 16% | <0.001 |
Within cluster | 58 | 61,333.55 | 1057.47 | 1057.47 | 84% | |
Total | 59 | 68,055.97 | 1251.70 | 100% |
Western Balkan Cluster | Number of Accession | Ne | I | h | PPL |
---|---|---|---|---|---|
1 | 25 | 1.443 | 0.416 | 0.266 | 88.24 |
2 | 35 | 1.577 | 0.510 | 0.321 | 88.55 |
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Velimirović, A.; Jovović, Z.; Perović, D.; Lehnert, H.; Mikić, S.; Mandić, D.; Pržulj, N.; Mangini, G.; Finetti-Sialer, M.M. SNP Diversity and Genetic Structure of “Rogosija”, an Old Western Balkan Durum Wheat Collection. Plants 2023, 12, 1157. https://doi.org/10.3390/plants12051157
Velimirović A, Jovović Z, Perović D, Lehnert H, Mikić S, Mandić D, Pržulj N, Mangini G, Finetti-Sialer MM. SNP Diversity and Genetic Structure of “Rogosija”, an Old Western Balkan Durum Wheat Collection. Plants. 2023; 12(5):1157. https://doi.org/10.3390/plants12051157
Chicago/Turabian StyleVelimirović, Ana, Zoran Jovović, Dragan Perović, Heike Lehnert, Sanja Mikić, Dragan Mandić, Novo Pržulj, Giacomo Mangini, and Mariella Matilde Finetti-Sialer. 2023. "SNP Diversity and Genetic Structure of “Rogosija”, an Old Western Balkan Durum Wheat Collection" Plants 12, no. 5: 1157. https://doi.org/10.3390/plants12051157
APA StyleVelimirović, A., Jovović, Z., Perović, D., Lehnert, H., Mikić, S., Mandić, D., Pržulj, N., Mangini, G., & Finetti-Sialer, M. M. (2023). SNP Diversity and Genetic Structure of “Rogosija”, an Old Western Balkan Durum Wheat Collection. Plants, 12(5), 1157. https://doi.org/10.3390/plants12051157