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Root architecture is a complex structure that comprises multiple traits of the root phenotype. Novel platforms and models have been developed to better understand root architecture. In this methods paper, we introduce a novel allometric model, named rhizochron index (m), which describes lateral root (LR) branching and elongation patterns across the primary root (PR). To test our model, we obtained data from 16 natural accessions of Arabidopsis thaliana at three stages of early root development to measure conventional traits of root architecture (e.g., PR and LR length), and extracted the rhizochron index (m). In addition, we tested previously published datasets to assess the utility of the rhizochron index (m) to distinguish mutants and environmental effects on root architecture. Our results indicate that rhizochron index (m) is useful to distinguish the natural variations of root architecture between A. thaliana accessions, but not across early stages of root development. Correlation analyses in these accessions showed that m is a novel trait that partially captures information from other root architecture traits such as total lateral root length, and the ratio between lateral root and primary root lengths. Moreover, we found that the rhizochron index was useful to distinguish ABA effect on root architecture, as well as the mutant pho1 phenotype. We propose the rhizochron index (m) as a new feature of the root architectural system to be considered, in addition to conventional traits in future investigations. Full article

Despite the importance of roots in determining plant performance, the factors controlling their development and longevity remain poorly understood. Grass morphology is based on repeating units called phytomers, with each capable of producing one leaf, one daughter tiller, and one or more roots. We developed a phytomer-based understanding of root birth, growth and senescence in Lolium perenne, using a modeling approach to explore seasonal effects on root turnover dynamics, and to explore cultivar differences in these processes. Similar to leaves, roots exhibit a clear progression from initiation, growing for approximately seven phyllochrons, with growth rates strongly influenced by environmental conditions. In spring, the phyllochron decreased over the experiment, while it increased in autumn. In spring, C availability exceeding maintenance respiratory requirements allowed root growth at each phytomer position, with a 70/30 split between maintenance and growth. Under C-deficient conditions in autumn, this split was approximately 80/20, with growth limited to younger phytomer positions, while older roots were more susceptible to starvation-induced senescence due to their high C requirements for maintenance respiration. Full article