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Keywords = orbital-free quantum crystallography

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21 pages, 4041 KiB  
Article
Unexpected XPS Binding Energy Observations Further Highlighted by DFT Calculations of Ruthenocene-Containing [IrIII(ppy)2(RCOCHCORc)] Complexes: Cytotoxicity and Crystal Structure of [Ir(ppy)2(FcCOCHCORc)]
by Blenerhassitt E. Buitendach, Elizabeth Erasmus, Eleanor Fourie, Frederick P. Malan, Jeanet Conradie, J. W. (Hans) Niemantsverdriet and Jannie C. Swarts
Molecules 2024, 29(22), 5383; https://doi.org/10.3390/molecules29225383 - 15 Nov 2024
Viewed by 1498
Abstract
The series of iridium(III) complexes, [Ir(ppy)2(RCOCHCOR′)], with R = CH3 and R′ = CH3 (1), Rc (2), and Fc (3), as well as R = Rc and R′ = Rc (4) [...] Read more.
The series of iridium(III) complexes, [Ir(ppy)2(RCOCHCOR′)], with R = CH3 and R′ = CH3 (1), Rc (2), and Fc (3), as well as R = Rc and R′ = Rc (4) or Fc (5), and R = R′ = Fc (6), ppy = 2-phenylpyridinyl, Fc = FeII5–C5H4)(η5–C5H5), and Rc = RuII5–C5H4)(η5–C5H5), has been investigated by single-crystal X-ray crystallography and X-ray photoelectron spectroscopy (XPS) supplemented by DFT calculations. Here, in the range of 3.74 ≤ ΣχR ≤ 4.68, for Ir 4f, Ru 3d and 3p and N 1s orbitals, binding energies unexpectedly decreased with increasing ΣχR (ΣχR = the sum of Gordy group electronegativities of the R groups on β-diketonato ligands = a measure of electron density on atoms), while in Fe 2p orbitals, XPS binding energy, as expected, increased with increasing ΣχR. Which trend direction prevails is a function of main quantum level, n = 1, 2, 3…, sub-quantum level (s, p, d, and f), initial state energies, and final state relaxation energies, and it may differ from compound series to compound series. Relations between DFT-calculated orbital energies and ΣχR followed opposite trend directions than binding energy/ΣχR trends. X-ray-induced decomposition of compounds was observed. The results confirmed good communication between molecular fragments. Lower binding energies of both the Ir 4f7/2 and N 1s photoelectron lines are associated with shorter Ir-N bond lengths. Cytotoxic tests showed that 1 (IC50 = 25.1 μM) and 3 (IC50 = 37.8 μM) are less cytotoxic against HeLa cells than cisplatin (IC50 = 1.1 μM), but more cytotoxic than the free β-diketone FcCOCH2COCH3 (IC50 = 66.6 μM). Full article
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16 pages, 2322 KiB  
Article
Can We Merge the Weak and Strong Tetrel Bonds? Electronic Features of Tetrahedral Molecules Interacted with Halide Anions
by Ekaterina V. Bartashevich, Svetlana E. Mukhitdinova, Iliya V. Klyuev and Vladimir G. Tsirelson
Molecules 2022, 27(17), 5411; https://doi.org/10.3390/molecules27175411 - 24 Aug 2022
Cited by 10 | Viewed by 1999
Abstract
Using the orbital-free quantum crystallography approach, we have disclosed the quantitative trends in electronic features for bonds of different strengths formed by tetrel (Tt) atoms in stable molecular complexes consisting of electrically neutral tetrahedral molecules and halide anions. We have revealed the role [...] Read more.
Using the orbital-free quantum crystallography approach, we have disclosed the quantitative trends in electronic features for bonds of different strengths formed by tetrel (Tt) atoms in stable molecular complexes consisting of electrically neutral tetrahedral molecules and halide anions. We have revealed the role of the electrostatic and exchange-correlation components of the total one-electron static potential that are determined by the equilibrium atomic structure and by kinetic Pauli potential, which reflects the spin-dependent electron motion features of the weak and strong bonds. The gap between the extreme positions in the electrostatic and total static potentials along the line linking the Tt atom and halide anion is wide for weak bonds and narrow for strong ones. It is in very good agreement with the number of minima in the Pauli potential between the bounded atoms. This gap exponentially correlates with the exchange-correlation potential in various series with a fixed nucleophilic fragment. A criterion for categorizing the noncovalent tetrel bonds (TtB) based on the potential features is suggested. Full article
(This article belongs to the Special Issue Computational Bond Analysis)
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