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Geophysical prospecting methods have been extensively used to outline buried antiquities in terrestrial sites. Despite the frequent application of these mapping and imaging approaches for the detection of archaeological relics in deep-water marine environments (e.g., shipwrecks), the aforementioned processes have minimal contribution when it comes to understanding the dynamics of the past in coastal and shallow aquatic archaeological sites. This work explores the possibilities of multicomponent geophysical techniques in revealing antiquities that have been submerged in diverse shallow coastal marine environments in the eastern Mediterranean. A group of four sites in Greece (Agioi Theodoroi, Olous, Lambayanna) and Cyprus (Pafos) spanning from prehistory to Roman times were chosen as test sites to validate the efficiency of electrical resistivity tomography, magnetic gradiometry, and ground penetrating radar methods. The comprehensive analysis of the geophysical data completed the picture for the hidden archeological elements in all the sites. The results manifest the significance and the potential of these methods for documenting and understanding the complex archaeological sites encountered in the Mediterranean. In view of climate change and the risks related to future sea level rise and erosion of low-level coastal areas, the results of this work could be integrated in a strategic framework to develop an effective interdisciplinary research model that can be applied to similar shallow water archaeological surveys, thus substantially contributing towards cultural resources management. Full article