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Brain–computer interface (BCI) systems include signal acquisition, preprocessing, feature extraction, classification, and an application phase. In fNIRS-BCI systems, deep learning (DL) algorithms play a crucial role in enhancing accuracy. Unlike traditional machine learning (ML) classifiers, DL algorithms eliminate the need for manual feature extraction. DL neural networks automatically extract hidden patterns/features within a dataset to classify the data. In this study, a hand-gripping (closing and opening) two-class motor activity dataset from twenty healthy participants is acquired, and an integrated contextual gate network (ICGN) algorithm (proposed) is applied to that dataset to enhance the classification accuracy. The proposed algorithm extracts the features from the filtered data and generates the patterns based on the information from the previous cells within the network. Accordingly, classification is performed based on the similar generated patterns within the dataset. The accuracy of the proposed algorithm is compared with the long short-term memory (LSTM) and bidirectional long short-term memory (Bi-LSTM). The proposed ICGN algorithm yielded a classification accuracy of 91.23 ± 1.60%, which is significantly (p < 0.025) higher than the 84.89 ± 3.91 and 88.82 ± 1.96 achieved by LSTM and Bi-LSTM, respectively. An open access, three-class (right- and left-hand finger tapping and dominant foot tapping) dataset of 30 subjects is used to validate the proposed algorithm. The results show that ICGN can be efficiently used for the classification of two- and three-class problems in fNIRS-based BCI applications. Full article