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Biology, Volume 2, Issue 1

2013 March - 22 articles

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Articles (22)

  • Review
  • Open Access
45 Citations
13,945 Views
36 Pages

Climate Change and Intertidal Wetlands

  • Pauline M. Ross and
  • Paul Adam

19 March 2013

Intertidal wetlands are recognised for the provision of a range of valued ecosystem services. The two major categories of intertidal wetlands discussed in this contribution are saltmarshes and mangrove forests. Intertidal wetlands are under threat fr...

(This article belongs to the Special Issue Biological Implications of Climate Change)
  • Article
  • Open Access
101 Citations
30,694 Views
26 Pages

Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals

  • Tamaki Yuri,
  • Rebecca T. Kimball,
  • John Harshman,
  • Rauri C. K. Bowie,
  • Michael J. Braun,
  • Jena L. Chojnowski,
  • Kin-Lan Han,
  • Shannon J. Hackett,
  • Christopher J. Huddleston and
  • Edward L. Braun
  • + 5 authors

13 March 2013

Insertion/deletion (indel) mutations, which are represented by gaps in multiple sequence alignments, have been used to examine phylogenetic hypotheses for some time. However, most analyses combine gap data with the nucleotide sequences in which they...

  • Review
  • Open Access
184 Citations
28,539 Views
20 Pages

11 March 2013

The Class Amphibia is one of the most severely impacted taxa in an on-going global biodiversity crisis. Because amphibian reproduction is tightly associated with the presence of water, climatic changes that affect water availability pose a particular...

(This article belongs to the Special Issue Biological Implications of Climate Change)
  • Review
  • Open Access
40 Citations
20,722 Views
21 Pages

1 March 2013

Within just a few years, the new methods for high-throughput next-generation sequencing have generated completely novel insights into the heritability and pathophysiology of human disease. In this review, we wish to highlight the benefits of the curr...

(This article belongs to the Special Issue Next Generation Sequencing Approaches in Biology)
  • Article
  • Open Access
11 Citations
7,881 Views
15 Pages

Targeted Toxin-Based Selectable Drug-Free Enrichment of Mammalian Cells with High Transgene Expression

  • Masahiro Sato,
  • Eri Akasaka,
  • Issei Saitoh,
  • Masato Ohtsuka,
  • Shingo Nakamura,
  • Takayuki Sakurai and
  • Satoshi Watanabe

28 February 2013

Almost all transfection protocols for mammalian cells use a drug resistance gene for the selection of transfected cells. However, it always requires the characterization of each isolated clone regarding transgene expression, which is time-consuming a...

(This article belongs to the Special Issue Gene Expression and Regulation)
  • Article
  • Open Access
43 Citations
11,308 Views
22 Pages

The Effect of Freeze-Thaw Conditions on Arctic Soil Bacterial Communities

  • Niraj Kumar,
  • Paul Grogan,
  • Haiyan Chu,
  • Casper T. Christiansen and
  • Virginia K. Walker

28 February 2013

Climate change is already altering the landscape at high latitudes. Permafrost is thawing, the growing season is starting earlier, and, as a result, certain regions in the Arctic may be subjected to an increased incidence of freeze-thaw events. The p...

(This article belongs to the Special Issue Polar Microbiology: Recent Advances and Future Perspectives)
  • Communication
  • Open Access
13 Citations
8,575 Views
10 Pages

Micro-Eukaryotic Diversity in Hypolithons from Miers Valley, Antarctica

  • Jarishma K. Gokul,
  • Angel Valverde,
  • Marla Tuffin,
  • Stephen Craig Cary and
  • Don A. Cowan

22 February 2013

The discovery of extensive and complex hypolithic communities in both cold and hot deserts has raised many questions regarding their ecology, biodiversity and relevance in terms of regional productivity. However, most hypolithic research has focused...

(This article belongs to the Special Issue Polar Microbiology: Recent Advances and Future Perspectives)
  • Review
  • Open Access
61 Citations
10,771 Views
14 Pages

5 February 2013

The Arctic environment is undergoing changes due to climate shifts, receiving contaminants from distant sources and experiencing increased human activity. Climate change may alter microbial functioning by increasing growth rates and substrate use due...

(This article belongs to the Special Issue Polar Microbiology: Recent Advances and Future Perspectives)
  • Review
  • Open Access
19 Citations
10,658 Views
13 Pages

Hepatitis C Virus and Hepatocellular Carcinoma

  • Tatsuo Kanda,
  • Osamu Yokosuka and
  • Masao Omata

30 January 2013

Hepatitis C virus (HCV), a hepatotropic virus, is a single stranded-positive RNA virus of ~9,600 nt. length belonging to the Flaviviridae family. HCV infection causes acute hepatitis, chronic hepatitis, cirrhosis and hepatocellular carcinoma (HCC). I...

  • Review
  • Open Access
23 Citations
10,441 Views
20 Pages

29 January 2013

Transcriptional regulation of genes involved in fatty acid metabolism is considered the major long-term regulatory mechanism controlling lipid homeostasis. By means of this mechanism, transcription factors, nutrients, hormones and epigenetics control...

  • Article
  • Open Access
34 Citations
11,620 Views
26 Pages

Timescales of Growth Response of Microbial Mats to Environmental Change in an Ice-Covered Antarctic Lake

  • Ian Hawes,
  • Dawn Y. Sumner,
  • Dale T. Andersen,
  • Anne D. Jungblut and
  • Tyler J. Mackey

25 January 2013

Lake Vanda is a perennially ice-covered, closed-basin lake in the McMurdo Dry Valleys, Antarctica. Laminated photosynthetic microbial mats cover the floor of the lake from below the ice cover to >40 m depth. In recent decades, the water level of L...

(This article belongs to the Special Issue Polar Microbiology: Recent Advances and Future Perspectives)
  • Article
  • Open Access
20 Citations
8,658 Views
12 Pages

Novel Cold-Adapted Esterase MHlip from an Antarctic Soil Metagenome

  • Renaud Berlemont,
  • Olivier Jacquin,
  • Maud Delsaute,
  • Marcello La Salla,
  • Jacques Georis,
  • Fabienne Verté,
  • Moreno Galleni and
  • Pablo Power

25 January 2013

An Antarctic soil metagenomic library was screened for lipolytic enzymes and allowed for the isolation of a new cytosolic esterase from the a/b hydrolase family 6, named MHlip. This enzyme is related to hypothetical genes coding esterases, aryl-ester...

(This article belongs to the Special Issue Polar Microbiology: Recent Advances and Future Perspectives)
  • Review
  • Open Access
39 Citations
10,200 Views
17 Pages

MicroRNA Target Identification—Experimental Approaches

  • Aida Martinez-Sanchez and
  • Chris L. Murphy

25 January 2013

MicroRNAs (miRNAs) are small non-coding RNA molecules of 21–23 nucleotides that control gene expression at the post-transcriptional level. They have been shown to play a vital role in a wide variety of biological processes and dysregulated expression...

  • Article
  • Open Access
51 Citations
19,135 Views
27 Pages

Microbial Analyses of Ancient Ice Core Sections from Greenland and Antarctica

  • Caitlin Knowlton,
  • Ram Veerapaneni,
  • Tom D'Elia and
  • Scott O. Rogers

25 January 2013

Ice deposited in Greenland and Antarctica entraps viable and nonviable microbes, as well as biomolecules, that become temporal atmospheric records. Five sections (estimated to be 500, 10,500, 57,000, 105,000 and 157,000 years before present, ybp) fr...

(This article belongs to the Special Issue Polar Microbiology: Recent Advances and Future Perspectives)
  • Article
  • Open Access
14 Citations
11,951 Views
51 Pages

25 January 2013

The Natural resistance-associated macrophage protein 1 (Nramp1 or Solute carrier 11 member 1, Slc11a1) transports divalent metals across the membrane of late endosomes and lysosomes in professional phagocytes. Nramp1 represents an ancient eukaryotic...

(This article belongs to the Special Issue Gene Expression and Regulation)
  • Review
  • Open Access
69 Citations
17,800 Views
35 Pages

PRDM Proteins: Molecular Mechanisms in Signal Transduction and Transcriptional Regulation

  • Erika Di Zazzo,
  • Caterina De Rosa,
  • Ciro Abbondanza and
  • Bruno Moncharmont

14 January 2013

PRDM (PRDI-BF1 and RIZ homology domain containing) protein family members are characterized by the presence of a PR domain and a variable number of Zn-finger repeats. Experimental evidence has shown that the PRDM proteins play an important role in g...

(This article belongs to the Special Issue Gene Expression and Regulation)
  • Article
  • Open Access
15 Citations
8,416 Views
9 Pages

Thermodynamic Stability of Psychrophilic and Mesophilic Pheromones of the Protozoan Ciliate Euplotes

  • Michael Geralt,
  • Claudio Alimenti,
  • Adriana Vallesi,
  • Pierangelo Luporini and
  • Kurt Wüthrich

14 January 2013

Three psychrophilic protein pheromones (En-1, En-2 and En-6) from the polar ciliate, Euplotes nobilii, and six mesophilic pheromones (Er-1, Er-2, Er-10, Er-11, Er-22 and Er-23) from the temperate-water sister species, Euplotes raikovi, were studied i...

(This article belongs to the Special Issue Polar Microbiology: Recent Advances and Future Perspectives)
  • Article
  • Open Access
60 Citations
19,105 Views
22 Pages

Isolation and Characterization of Bacteria from Ancient Siberian Permafrost Sediment

  • De-Chao Zhang,
  • Anatoli Brouchkov,
  • Gennady Griva,
  • Franz Schinner and
  • Rosa Margesin

10 January 2013

In this study, we isolated and characterized bacterial strains from ancient (Neogene) permafrost sediment that was permanently frozen for 3.5 million years. The sampling site was located at Mammoth Mountain in the Aldan river valley in Central Yakuti...

(This article belongs to the Special Issue Polar Microbiology: Recent Advances and Future Perspectives)
  • Review
  • Open Access
8 Citations
12,193 Views
21 Pages

9 January 2013

Modern genetic analysis has shown that most polymorphisms associated with human disease are non-coding. Much of the functional information contained in the non-coding genome consists of cis-regulatory sequences (CRSs) that are required to respond to...

(This article belongs to the Special Issue Gene Expression and Regulation)
  • Review
  • Open Access
53 Citations
20,668 Views
24 Pages

BRCA1 and Its Network of Interacting Partners

  • Charita M. Christou and
  • Kyriacos Kyriacou

2 January 2013

BRCA1 is a large multi-domain protein with a pivotal role in maintaining genome stability and cell cycle progression. Germline mutations in the BRCA1 gene confer an estimated lifetime risk of 60%–80% for breast cancer and 15%–60% for ovarian cancer....

  • Article
  • Open Access
54 Citations
14,494 Views
25 Pages

Linking Eco-Energetics and Eco-Hydrology to Select Sites for the Assisted Colonization of Australia’s Rarest Reptile

  • Nicola Mitchell,
  • Matthew R. Hipsey,
  • Sophie Arnall,
  • Gavan McGrath,
  • Hasnein Bin Tareque,
  • Gerald Kuchling,
  • Ryan Vogwill,
  • Murugesu Sivapalan,
  • Warren P. Porter and
  • Michael R. Kearney

27 December 2012

Assisted colonization—the deliberate translocation of species from unsuitable to suitable regions—is a controversial management tool that aims to prevent the extinction of populations that are unable to migrate in response to climate change or to sur...

(This article belongs to the Special Issue Biological Implications of Climate Change)
  • Review
  • Open Access
4 Citations
7,653 Views
14 Pages

Gene Expression and Regulation in Adrenocortical Tumorigenesis

  • Annabelle L. Fonseca,
  • James Healy,
  • John W. Kunstman,
  • Reju Korah and
  • Tobias Carling

27 December 2012

Adrenocortical tumors are frequently found in the general population, and may be benign adrenocortical adenomas or malignant adrenocortical carcinomas. Unfortunately the clinical, biochemical and histopathological distinction between benign and malig...

(This article belongs to the Special Issue Gene Expression and Regulation)
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Biology - ISSN 2079-7737