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Acta Microbiologica Hellenica

Acta Microbiologica Hellenica (AMH) is an international, peer-reviewed, open access journal on medical microbiology, published quarterly online. It is the official journal of the Hellenic Society for Microbiology (HMS). Society members receive discounts on the article processing charges.

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All Articles (111)

Background: Invasive pneumococcal disease (IPD) is predominantly caused by Streptococcus pneumoniae and is associated with high mortality. This vaccine-preventable disease has been a significant public health concern, particularly among children < 5 years and adults > 50 years in India. Pneumococcal vaccines help prevent pneumococcal infections caused by certain strains of S. pneumoniae, but diagnostic challenges in India hinder disease management. Methods: The objective of this expert panel discussion is to deliberate upon the pathogenesis and epidemiology of S. pneumoniae in India, techniques for overcoming the diagnostic challenges in the isolation and detection of S. pneumoniae, and to explore opportunities for partnerships between clinicians and microbiologists to bridge gaps. A non-systematic, targeted literature search was conducted to identify studies supporting key themes of expert panel discussion. Eight microbiologists, one infectious disease, one pediatrics and neonatology, and one respiratory medicine specialist from different parts of India participated in the discussion. Results: The panelists reiterated that while culture is the gold standard, multiplex real-time polymerase chain reaction and BioFire® FilmArray® technology have been the most common diagnostic methods for the detection of S. pneumoniae in India, especially in tier 1 cities. Conclusions: This article elucidates the challenges faced by microbiologists and clinicians in isolating and detecting the pathogen, and proposes solutions to determine the true burden of pneumococcal disease in India. This information could further inform public health policy and vaccination strategies.

Acta Microbiol. Hell.

9 September 2026

Epidemiological factors associated with lower perceived burden of pneumococcal disease in India.
  • Communication
  • Open Access

Introduction: Ventilator-associated pneumonia (VAP) is associated with increased morbidity and mortality. Early-onset (EOVAP) and late-onset (LOVAP) VAP differ in risk factors, microbiology, and outcomes. Methods: A retrospective cohort study of adult ICU patients admitted to a tertiary hospital between May 2020 and May 2022 compared EOVAP and LOVAP. Results: 194 patients were included (73.7% male), with a median age of 61 years. A total of 70.6% were admitted to the ICU for infection-related respiratory failure, predominantly due to COVID-19 (59.3%). EOVAP represented 21% and LOVAP 79% of cases, with median days to diagnosis of 4 and 11, respectively. Empirical antibiotic therapy was adequate in both groups; de-escalation was possible in 26.8%, and escalation due to treatment failure was required in 13.4%. The most commonly prescribed initial antibiotic was piperacillin–tazobactam (45%). Broad-spectrum antibiotic use did not differ between groups. Amoxicillin–clavulanate resistance was high in both groups (LOVAP 62.1%; EOVAP 48.8%), and piperacillin–tazobactam resistance was more frequent in LOVAP (41.2%). Follow-up cultures showed a high persistence rate (73.2%), with no significant change in resistance patterns. Conclusions: VAP remains common in the ICU, and the COVID-19 pandemic significantly impacted the already complex epidemiology of VAP. High resistance rates to amoxicillin–clavulanate and frequent isolation of MDR pathogens challenge empirical treatment based on onset timing, supporting empiric antibiotic selection guided by local microbiological ecology.

Acta Microbiol. Hell.

7 September 2026

Frequency of antibiotic resistance by days of IMV until VAP diagnosis. Curves show model-estimated probabilities of resistance to amoxicillin–clavulanate, piperacillin–tazobactam, and meropenem as a function of the duration of invasive mechanical ventilation before VAP diagnosis. Shaded areas around each line represent the corresponding 95% confidence intervals. A total of 194 patients contributed to the analysis. The number of patients contributing to each observed time point varied with the number of VAP episodes diagnosed on that day, with substantially fewer observations at later time points.

In Vitro Activity of Mecillinam Against ESBL- and Non-ESBL-Producing Escherichia coli and Klebsiella pneumoniae Urinary Isolates

  • Alvaro Irigoyen-von-Sierakowski,
  • Ramón Pérez-Tanoira and
  • Juan Cuadros-González
  • + 6 authors

The rising prevalence of multidrug-resistant (MDR) Enterobacterales poses a major challenge for the empirical treatment of urinary tract infections (UTIs). We evaluated the in vitro activity of mecillinam against urinary Escherichia coli and Klebsiella pneumoniae isolates, including extended-spectrum β-lactamase (ESBL)-producing and non-ESBL-producing isolates. In this prospective, single-center study conducted in Spain (December 2020–March 2021), urinary isolates of E. coli and K. pneumoniae from patients with suspected UTIs were tested for susceptibility to mecillinam and other commonly used antibiotics. A total of 503 isolates were analyzed, including 285 non-ESBL-producing and 218 ESBL-producing isolates. Overall susceptibility was 96.2% (95% CI, 94.2–97.7%) for mecillinam and 98.2% for ertapenem. Mecillinam susceptibility was 96.5% (95% CI, 93.6–98.3%) among non-ESBL-producing isolates and 95.9% (95% CI, 92.3–98.1%) among ESBL-producing isolates, with MIC50 values of 0.5 mg/L and 1 mg/L, respectively. Among ESBL-producing isolates, susceptibility to fosfomycin and trimethoprim–sulfamethoxazole was 72.9% and 44.0%, respectively. These findings demonstrate high in vitro activity of mecillinam against urinary E. coli and K. pneumoniae isolates, including both ESBL-producing and non-ESBL-producing isolates, and provide microbiological evidence supporting further clinical evaluation of pivmecillinam as an oral treatment option for UTIs.

Acta Microbiol. Hell.

26 August 2026

Susceptibility rates of E. coli and K. pneumoniae urinary isolates to selected antimicrobial agents according to ESBL production. Susceptibility rates are shown for all isolates (Total), ESBL-producing isolates, and non-ESBL-producing isolates. Susceptibility was interpreted according to EUCAST v10.0 clinical breakpoints applicable to each organism–antimicrobial combination. Nitrofurantoin was excluded because the EUCAST v10.0 clinical breakpoint for uncomplicated urinary tract infection was applicable to E. coli but not to K. pneumoniae.

Carbapenem-resistant Enterobacterales (CRE) are a major public health concern, yet genomic data from Bulgaria remain limited. We investigated the genomic epidemiology and genomic characteristics of clinically significant CRE recovered at University Hospital “Lozenetz”, Sofia, between 2022 and 2025. Antimicrobial susceptibility testing, phenotypic carbapenemase characterization, and PCR were combined with whole-genome sequencing of 23 purposively selected isolates chosen to capture temporal, species, carbapenemase, specimen, ward, and resistance-phenotype diversity. The proportion of CRE among all Enterobacterales remained broadly stable over the study period, and Klebsiella pneumoniae was the predominant species throughout. NDM-type carbapenemases were the most frequent overall, although VIM-, KPC-, and OXA-48-like enzymes were also detected. Among the sequenced isolates K. pneumoniae ST6260 (n = 16) was predominant. The remaining isolates included single K. pneumoniae isolates belonging to ST11, ST101, and ST258; two Enterobacter hormaechei ST114; one Proteus mirabilis ST93; and one Providencia stuartii ST46. All ST6260 isolates carried chromosomal blaNDM-5 within a conserved multidrug-resistance module with variable downstream regions, whereas blaOXA-232 was situated on a small ColKP3 plasmid within a defined subcluster. Overall, the data indicate that ST6260 is an emerging hospital-associated multidrug-resistant lineage.

Acta Microbiol. Hell.

21 August 2026

Maximum-likelihood phylogeny based on the 95% soft-core SNP alignment of the 16 K. pneumoniae ST6260 isolates. Metadata tracks indicate hospital ward, specimen type, year of isolation, sequence type (ST), selected resistance determinants, plasmid replicons, and virulence-associated loci. The tree shows the division of ST6260 into two major clusters, with Cluster 1 including all blaOXA-232-positive isolates and Cluster 2 defined by mgrB truncation together with the pmrBT157P substitution. BL, blood; BAL, bronchoalveolar lavage; CVC, central venous catheter; Amb, ambulatory; Amb *, ambulatory patient who had undergone urological surgery at another hospital 2 weeks earlier; C-Surg, cardiac surgery; ICU, intensive care unit; Neph, nephrology; Card, cardiology. Colored cells indicate the presence of the corresponding resistance determinant, plasmid replicon, or virulence-associated locus; colors correspond to the functional categories shown in the figure key, whereas blank cells indicate absence.

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Acta Microbiol. Hell. - ISSN 2813-9054