Special Issue "Feature Paper 2013"
A special issue of Proteomes (ISSN 2227-7382).
Deadline for manuscript submissions: closed (31 October 2013)
Prof. Dr. Jacek R. Wisniewski
Department of Proteomics and Signal Transduction, Max-Planck-Institute for Biochemistry, Am Klopferspitz 18, D-82152 Martinsried, Germany
Phone: +49 89 85 78 2205
Fax: +49 89 85 78 2219
Interests: mass spectrometry based proteomics; quantitative proteomics; clinical proteomics; cancer proteomics; sample preparation for LC-MS/MS analysis
Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. Papers will be published continuously (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.
Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are refereed through a peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Proteomes is an international peer-reviewed Open Access quarterly journal published by MDPI.
Please visit the Instructions for Authors page before submitting a manuscript. For the first couple of issues the Article Processing Charge (APC) will be waived for well-prepared manuscripts. English correction and/or formatting fees of 250 CHF (Swiss Francs) will be charged in certain cases for those articles accepted for publication that require extensive additional formatting and/or English corrections.
Article: Quantitative Analysis of the Human Milk Whey Proteome Reveals Developing Milk and Mammary-Gland Functions across the First Year of Lactation
Proteomes 2013, 1(2), 128-158; doi:10.3390/proteomes1020128
Received: 15 July 2013; in revised form: 15 August 2013 / Accepted: 26 August 2013 / Published: 3 September 2013| Cited by 1 | PDF Full-text (2188 KB) | HTML Full-text | XML Full-text | Supplementary Files
Article: Bioinformatic Analysis of Differential Protein Expression in Calu-3 Cells Exposed to Carbon Nanotubes
Proteomes 2013, 1(3), 219-239; doi:10.3390/proteomes1030219
Received: 26 July 2013; in revised form: 29 September 2013 / Accepted: 30 September 2013 / Published: 14 October 2013| Cited by 1 | PDF Full-text (1620 KB) | HTML Full-text | XML Full-text
Article: Proteomic Analysis of Matched Formalin-Fixed, Paraffin-Embedded Specimens in Patients with Advanced Serous Ovarian Carcinoma
Proteomes 2013, 1(3), 240-253; doi:10.3390/proteomes1030240
Received: 25 July 2013; in revised form: 8 October 2013 / Accepted: 8 October 2013 / Published: 17 October 2013| PDF Full-text (586 KB) | HTML Full-text | XML Full-text | Supplementary Files
Article: Shared and Unique Proteins in Human, Mouse and Rat Saliva Proteomes: Footprints of Functional Adaptation
Proteomes 2013, 1(3), 275-289; doi:10.3390/proteomes1030275
Received: 8 November 2013; in revised form: 6 December 2013 / Accepted: 10 December 2013 / Published: 16 December 2013| PDF Full-text (655 KB) | HTML Full-text | XML Full-text | Supplementary Files
Article: Label-Free LC-MS Profiling of Skeletal Muscle Reveals Heart-Type Fatty Acid Binding Protein as a Candidate Biomarker of Aerobic Capacity
Proteomes 2013, 1(3), 290-308; doi:10.3390/proteomes1030290
Received: 31 October 2013; in revised form: 7 December 2013 / Accepted: 12 December 2013 / Published: 18 December 2013| Cited by 1 | PDF Full-text (1836 KB) | HTML Full-text | XML Full-text | Supplementary Files
Review: Respiratory Proteomics Today: Are Technological Advances for the Identification of Biomarker Signatures Catching up with Their Promise? A Critical Review of the Literature in the Decade 2004–2013
Proteomes 2014, 2(1), 18-52; doi:10.3390/proteomes2010018
Received: 15 October 2013; in revised form: 8 January 2014 / Accepted: 10 January 2014 / Published: 22 January 2014| PDF Full-text (776 KB) | HTML Full-text | XML Full-text | Supplementary Files
Article: Is Five Percent Too Small? Analysis of the Overlaps between Disorder, Coiled Coil and Collagen Predictions in Complete Proteomes
Proteomes 2014, 2(1), 72-83; doi:10.3390/proteomes2010072
Received: 31 October 2013; in revised form: 24 January 2014 / Accepted: 27 January 2014 / Published: 7 February 2014| PDF Full-text (1221 KB) | HTML Full-text | XML Full-text | Supplementary Files
Proteomes 2014, 2(1), 53-71; doi:10.3390/proteomes2010053
Received: 4 December 2013; in revised form: 15 January 2014 / Accepted: 26 January 2014 / Published: 7 February 2014| PDF Full-text (723 KB) | HTML Full-text | XML Full-text
Proteomes 2014, 2(1), 128-153; doi:10.3390/proteomes2010128
Received: 17 December 2013; in revised form: 12 February 2014 / Accepted: 20 February 2014 / Published: 7 March 2014| PDF Full-text (665 KB)
Proteomes 2014, 2(2), 154-168; doi:10.3390/proteomes2020154
Received: 17 December 2013; in revised form: 27 February 2014 / Accepted: 20 March 2014 / Published: 25 March 2014| PDF Full-text (476 KB)
The below list represents only planned manuscripts. Some of these manuscripts have not been received by the Editorial Office yet. Papers submitted to MDPI journals are subject to peer-review.
Title: Is five percent too small? Analysis of the overlaps between disorder, coiled coil and collagen predictions in complete proteomes
Author: Zoltán Gáspári
Affiliation: Faculty of Information Technology, Pázmány Péter Catholic University, Práter st. 50/A 1083 Budapest, Hungary
Abstract: Identification of intrinsic disorder in proteins and proteomes has revealed important novel aspects of protein function and interactions. However, it has been pointed out that several oligomeric fibrillar protein motifs such as coiled coils and collagen triple helical segments are often identified as intrinsically disordered. The present work aims at proteome-level identification and quantification of such overlaps to assess their significance in large-scale studies of protein disorder. We found that the percentage of cross-predicted residues is around 5% in the human proteome but shows remarkable variation in different organisms.
Last update: 29 October 2013