Editor’s Choice Articles

Editor’s Choice articles are based on recommendations by the scientific editors of MDPI journals from around the world. Editors select a small number of articles recently published in the journal that they believe will be particularly interesting to readers, or important in the respective research area. The aim is to provide a snapshot of some of the most exciting work published in the various research areas of the journal.

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15 pages, 1584 KiB  
Article
Effects of Single or Combined Administration of Dietary Synbiotic and Sodium Propionate on Humoral Immunity and Oxidative Defense, Digestive Enzymes and Growth Performances of African Cichlid (Labidochromis lividus) Challenged with Aeromonas hydrophila
by Omid Safari, Mehrdad Sarkheil, Davar Shahsavani and Marina Paolucci
Fishes 2021, 6(4), 63; https://doi.org/10.3390/fishes6040063 - 15 Nov 2021
Cited by 10 | Viewed by 2691
Abstract
The aim of the present study was to investigate the potential effects of dietary synbiotic (SYN) (Pediococcus acidilactici + Galactooligosaccharides; 10 g kg−1), sodium propionate (SP; 5, 10 and 20 g kg−1) and a combination of SYN + [...] Read more.
The aim of the present study was to investigate the potential effects of dietary synbiotic (SYN) (Pediococcus acidilactici + Galactooligosaccharides; 10 g kg−1), sodium propionate (SP; 5, 10 and 20 g kg−1) and a combination of SYN + SP on the growth performance, humoral immunity, antioxidant responses and disease resistance against Aeromonas hydrophila of African cichlid (Labidochromis lividus) fingerlings (0.52 ± 0.05 g) in a feeding trial lasting 63 days. A completely randomized design was run with eight treatments, including 0 (control) and supplemented diets containing SYN + SP (e.g., 10 + 5, 10 + 10, 10 + 20, 0 + 5, 0 + 10, 0 + 20 and 10 + 10). The lowest feed conversion ratio value was observed in fish fed the 5 g kg−1-SP and 10 g kg−1-SYN (p < 0.05). The highest values of protein efficiency ratio and protein productive value were recorded in fish fed the 10 g kg−1-SYN (p < 0.05). Fish fed the 10 g kg−1-SYN diet had the highest activities of immunity (lysozyme, immunoglobulin) and antioxidant responses (glutathione peroxidase and superoxide dismutase) (p < 0.05). After 28 days post-challenge, the highest survival rate (57%) was recorded in the diet containing 10 g kg−1 SYN and 5 g kg−1 SP. The results indicated that the single administration of SYN or combined with SP, especially at the level of 5 g kg−1 of diet, enhanced the survival and growth performances, humoral immune response, antioxidant and digestive enzymes of African cichlid. Full article
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13 pages, 1024 KiB  
Article
Technical Efficiency and Output Losses in Shrimp Farming: A Case in Mekong Delta, Vietnam
by Keo Sa Rate Thach, Hong Tu Vo and Ji-Yong Lee
Fishes 2021, 6(4), 59; https://doi.org/10.3390/fishes6040059 - 11 Nov 2021
Cited by 3 | Viewed by 3339
Abstract
The conversion from black tiger shrimp farming and crop farming to white leg shrimp production is widespread in Vietnam’s Mekong Delta provinces. However, this conversion trend also contains many risks related to the technical aspects of the production process. The study mainly aims [...] Read more.
The conversion from black tiger shrimp farming and crop farming to white leg shrimp production is widespread in Vietnam’s Mekong Delta provinces. However, this conversion trend also contains many risks related to the technical aspects of the production process. The study mainly aims to estimate the technical efficiency of white leg shrimp farming. It also compares the technical efficiency of white leg shrimp farming between the traditional group that historically has cultivated white leg shrimp and the group that recently converted from black tiger shrimp and crops to white leg shrimp, in order to evaluate the efficiency and adaptability of shrimp farming. Primary data were collected by directly interviewing 99 farmers in traditional areas and 101 farmers in recently converted areas in the study sites and analyzed by using the stochastic frontier method. The calculated technical efficiency was around 72.9 percent, suggesting that farmers could increase their output level by about 27.1%, given constant inputs. There was no difference in the technical efficiency of the two groups, indicating that the converted farms have sufficient adaptability when switching to white leg shrimp farming. The output loss in farmers’ production is still very high, with an average loss of 1973 kg/hectare. Full article
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10 pages, 1853 KiB  
Review
Foundation and Prospects of Wild Population Reconstruction of Acipenser dabryanus
by Junyi Li, Hao Du, Jinming Wu, Hui Zhang, Li Shen and Qiwei Wei
Fishes 2021, 6(4), 55; https://doi.org/10.3390/fishes6040055 - 30 Oct 2021
Cited by 5 | Viewed by 2198
Abstract
Acipenser dabryanus is an endemic fish inhabiting the upper reaches of the Yangtze River in China. It is classified as a first-class nationally protected animal in China and is listed in the International Union for Conservation of Nature (IUCN) Red List of Critically [...] Read more.
Acipenser dabryanus is an endemic fish inhabiting the upper reaches of the Yangtze River in China. It is classified as a first-class nationally protected animal in China and is listed in the International Union for Conservation of Nature (IUCN) Red List of Critically Endangered Species (CR). Recently, there has been a decrease in natural reproduction of A. dabryanus, and the wild population is almost extinct. This paper summarizes the changes observed in the natural population of A.dabryanus and the factors leading to its endangerment. Based on the process of artificial propagation and achievement of relevant protection goals, this paper presents the concept and technical framework for reconstruction of the wild population of A. dabryanus. In addition, by comprehensively reviewing the research findings and existing problems in the resource protection and monitoring of A. dabryanus in recent years, we assessed the possibility of wild population reconstruction and resource restoration for A. dabryanus. Reconstruction and restoration measures for the wild population of A. dabryanus are proposed, with the aim of providing a scientific basis for the reconstruction of the natural population and the improvement and restoration of critical habitat of this species. Furthermore, it is hoped that this paper will serve as a reference for the protection and restoration of other endangered fishes. Full article
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16 pages, 2514 KiB  
Article
Experimental Study of the Environmental Effects of Summertime Cocultures of Seaweed Gracilaria lemaneiformis (Rhodophyta) and Japanese Scallop Patinopecten yessoensis in Sanggou Bay, China
by Yi Liu, Xinmeng Wang, Wenguang Wu, Jun Yang, Ningning Wu and Jihong Zhang
Fishes 2021, 6(4), 53; https://doi.org/10.3390/fishes6040053 - 22 Oct 2021
Cited by 5 | Viewed by 2537
Abstract
The shellfish–algae mode of integrated multitrophic aquaculture (IMTA) is a sustainable aquaculture method that benefits the environment and the carbon cycle. However, most current shellfish–algae aquaculture modes are based on the expansion of kelp aquaculture. Due to the low tolerance of kelp to [...] Read more.
The shellfish–algae mode of integrated multitrophic aquaculture (IMTA) is a sustainable aquaculture method that benefits the environment and the carbon cycle. However, most current shellfish–algae aquaculture modes are based on the expansion of kelp aquaculture. Due to the low tolerance of kelp to high temperatures, integrated shellfish–algae aquaculture areas often become shellfish monocultures in summer, which may lead to both high mortality rate of shellfish and to economic loss while causing serious environmental harm via eutrophication, decreases in dissolved oxygen (DO), and decreases in pH. In this study, we investigated the effects of different ratios of seaweed (Gracilaria lemaneiformis), which is tolerant of high temperatures, to Japanese scallop (Patinopecten yessoensis) on water quality and environmental parameters. A two-day small-scale enclosure water body experiment was conducted in Sanggou Bay (Shandong, China) in August 2019. The results demonstrated that culturing shellfish alone significantly affected pH, DO, eutrophication, and other environmental indicators, as well as the carbonate system. The negative environmental impact of the shellfish–algae aquaculture system was much smaller. However, too high a proportion of algae might consume excessive amounts of dissolved inorganic nitrogen (DIN) and nutrients, while too low a proportion of algae might not fully absorb the nutrients released by the cultured shellfish, in turn leading to an increased risk of eutrophication. The shellfish–algae aquaculture system not only improved the inorganic carbon system, but also the organic carbon system. At the end of the experiment, all the parameters of the inorganic carbon system had decreased significantly, while all the parameters of the organic carbon system had increased significantly. The results of this study illustrate the need to include macroalgae rotations in summer, and that an appropriate ratio of shellfish to algae is necessary to achieve a sustainable aquaculture system. Moreover, this research has also confirmed the importance of the future and related research in the actual production, which will provide useful information to guide governmental strategies for summer aquaculture rotations and insight into the controversy concerning whether aquaculture is a carbon source or sink. Full article
(This article belongs to the Special Issue Sustainable Aquaculture and Fisheries)
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17 pages, 3316 KiB  
Article
Nondestructive Monitoring of Soft Bottom Fish and Habitats Using a Standardized, Remote and Unbaited 360° Video Sampling Method
by Delphine Mallet, Marion Olivry, Sophia Ighiouer, Michel Kulbicki and Laurent Wantiez
Fishes 2021, 6(4), 50; https://doi.org/10.3390/fishes6040050 - 15 Oct 2021
Cited by 9 | Viewed by 2952
Abstract
Lagoon soft-bottoms are key habitats within coral reef seascapes. Coral reef fish use these habitats as nurseries, feeding grounds and transit areas. At present, most soft-bottom sampling methods are destructive (trawling, longlining, hook and line). We developed a remote, unbaited 360° video sampling [...] Read more.
Lagoon soft-bottoms are key habitats within coral reef seascapes. Coral reef fish use these habitats as nurseries, feeding grounds and transit areas. At present, most soft-bottom sampling methods are destructive (trawling, longlining, hook and line). We developed a remote, unbaited 360° video sampling method (RUV360) to monitor fish species assemblages in soft bottoms. A low-cost, high-definition camera enclosed in a waterproof housing and fixed on a tripod was set on the sea floor in New Caledonia from a boat. Then, 534 videos were recorded to assess the efficiency of the RUV360. The technique was successful in sampling bare soft-bottoms, seagrass beds, macroalgae meadows and mixed soft-bottoms. It is easy to use and particularly efficient, i.e., 88% of the stations were sampled successfully. We observed 10,007 fish belonging to 172 species, including 45 species targeted by fishermen in New Caledonia, as well as many key species. The results are consistent with the known characteristics of the lagoon soft bottom fish assemblages of New Caledonia. We provide future users with general recommendations and reference plots to estimate the proportion of the theoretical total species richness sampled, according to the number of stations or the duration of the footage. Full article
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13 pages, 3339 KiB  
Article
Influence of Spatial Scale Selection of Environmental Factors on the Prediction of Distribution of Coilia nasus in Changjiang River Estuary
by Weizhao Meng, Yihe Gong, Xuefang Wang, Jianfeng Tong, Dongyan Han, Jinhui Chen and Jianhui Wu
Fishes 2021, 6(4), 48; https://doi.org/10.3390/fishes6040048 - 12 Oct 2021
Cited by 7 | Viewed by 2071
Abstract
An estuary region is a complex environment with a transition from fresh to brackish to salt water, and in which some environmental factors change dramatically over small ranges. Therefore, it is important to understand the impact of the selection of spatial scale on [...] Read more.
An estuary region is a complex environment with a transition from fresh to brackish to salt water, and in which some environmental factors change dramatically over small ranges. Therefore, it is important to understand the impact of the selection of spatial scale on the prediction of the distribution of estuarine species. As the largest estuary in China, the Changjiang River estuary is the spawning ground, feeding ground, and migration channel for many species. Based on Coilia nasus, an important economic fish species in the Changjiang River estuary, this study uses the two-stage generalized additive model (GAM) to investigate the potential differences in the response of species’ spatial distribution when environmental factors are assessed at different spatial scales (1′ × 1′, 2′ × 2′, 3′ × 3′, 4′ × 4′, 5′ × 5′). The results showed the following: (1) according to the analysis of the variance inflation factor (VIF), the values of all environmental factors were less than three and we found no correlation among the environmental variables selected. (2) The first stage GAM retained six variables, including year, month, latitude (Lat), water depth (Depth, m), bottom salinity (Sal, mg/L), and chemical oxygen demand (COD, mg/L). The second stage GAM retained four variables, including Year, Lat, pH, and chlorophyll a (Chl-a, μg/L). (3) The mean value of the Chla for the 3′ × 3′ spatial scale was significantly lower than that of the other spatial scales, and the mean value of Sal for the 5′ × 5′ spatial scale was higher than that of the other spatial scales. (4) In terms of the spatial distribution of abundance, the distribution patterns of C. nasus predicted by all scales were not very similar, and the distribution patterns predicted by the 5′ × 5′ scale, in the autumn of 2012, were significantly different from those at other scales. Therefore, the selection of spatiotemporal scales may affect predictions of the spatial distributions of species. We suggest that potential spatiotemporal scale effects should be evaluated in future studies. Full article
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13 pages, 3890 KiB  
Article
Genetic Evaluation of Black Sea Bream (Acanthopagrus schlegelii) Stock Enhancement in the South China Sea Based on Microsatellite DNA Markers
by Xi Wang, Zhuoying Weng, Yang Yang, Sijie Hua, Hanfei Zhang and Zining Meng
Fishes 2021, 6(4), 47; https://doi.org/10.3390/fishes6040047 - 11 Oct 2021
Cited by 7 | Viewed by 2583
Abstract
This is the first genetic evaluation of hatchery-based stock enhancement of black sea bream (Acanthopagrus schlegelii) in the South China Sea after a two-year monitoring period. In this study, microsatellite DNA markers were used to calculate the contribution rate and analyze [...] Read more.
This is the first genetic evaluation of hatchery-based stock enhancement of black sea bream (Acanthopagrus schlegelii) in the South China Sea after a two-year monitoring period. In this study, microsatellite DNA markers were used to calculate the contribution rate and analyze genetic changes before and after stock enhancement. Two out of one hundred and sixty nine individuals from three recaptured populations were assigned to broodstock with a contribution rate of 1.18%, revealing that the hatchery-released juvenile fish could survive in the natural environment and had a positive effect on population replenishment in wild black sea bream abundance. However, we found that the release population had the lowest genetic diversity and significant genetic differentiation from other populations. In addition, genetic diversity detected in the recaptured population was lower than that in the wild population, and their genetic differentiation reached a significant level. Our results suggested that releasing cultured black sea bream juveniles with low genetic quality might be genetically harmful for the maintenance of wild genotypes. Therefore, it is necessary to assess the genetic variation of the hatchery population before implementing a stock enhancement and establish a long-term evaluation for monitoring the genetic effect caused by releasing this fish species. Full article
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12 pages, 9246 KiB  
Article
Comparison of Metabolic Rates of Young of the Year Beluga (Huso huso), Sterlet (Acipenser ruthenus) and Bester Hybrid Reared in a Recirculating Aquaculture System
by Mirela Crețu, Raluca-Cristina Guriencu, Lorena Dediu and Maria-Desimira Stroe
Fishes 2021, 6(4), 46; https://doi.org/10.3390/fishes6040046 - 9 Oct 2021
Cited by 2 | Viewed by 2819
Abstract
In the present study, oxygen consumption of two sturgeon species, beluga (Huso huso), sterlet (Acipenser ruthenus), and their hybrid reared in a recirculating aquaculture system were compared over body intervals from 54–107 g to determine the interspecific variation of [...] Read more.
In the present study, oxygen consumption of two sturgeon species, beluga (Huso huso), sterlet (Acipenser ruthenus), and their hybrid reared in a recirculating aquaculture system were compared over body intervals from 54–107 g to determine the interspecific variation of metabolic rate. Metabolic rates were measured using the intermittent-flow respirometry technique. Standard oxygen consumption rates (SMR, mg O2 h−1) of sterlet were 30% higher compared with beluga and 22% higher compared with bester hybrid. The routine metabolic rate (RMR, mg O2 h−1) averaged 1.58 ± 0.13 times the SMR for A. ruthenus, 1.59 ± 0.3 for H. huso, and 1.42 ± 0.15 for the hybrid bester. However, the study revealed no significant differences (p > 0.05) between mean values of SMR and RMR for beluga and bester hybrid. The scaling coefficient reflected a closed isometry for the hybrid (b = 0.97), while for the purebred species the coefficient of 0.8 suggests a reduction in oxygen consumption with increasing body mass. These findings may contribute to understanding the differences in growth performances and oxygen requirements of the studied species reared in intensive aquaculture system. Full article
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21 pages, 1999 KiB  
Article
Aurantiochytrium sp. Meal Improved Body Fatty Acid Profile and Morphophysiology in Nile Tilapia Reared at Low Temperature
by Rosana Oliveira Batista, Renata Oselame Nobrega, Delano Dias Schleder, James Eugene Pettigrew and Débora Machado Fracalossi
Fishes 2021, 6(4), 45; https://doi.org/10.3390/fishes6040045 - 8 Oct 2021
Cited by 10 | Viewed by 2814
Abstract
Aurantiochytrium sp. is a heterotrophic microorganism that produces docosahexaenoic acid (DHA), thus being considered as a possible replacement for fish oil in aquafeeds. We investigated the effect of Aurantiochytrium sp. meal (AM) dietary levels (0, 5, 10, 20, and 40 g kg−1 [...] Read more.
Aurantiochytrium sp. is a heterotrophic microorganism that produces docosahexaenoic acid (DHA), thus being considered as a possible replacement for fish oil in aquafeeds. We investigated the effect of Aurantiochytrium sp. meal (AM) dietary levels (0, 5, 10, 20, and 40 g kg−1) on Nile tilapia body and hepatopancreas fatty acid (FA) profile, body FA retention, somatic indices, and morphophysiological changes in the intestine and hepatopancreas, after feeding Nile tilapia juveniles (average initial weight 8.47 g) for 87 days at 22 °C. The 10AM diet was compared to a control diet containing cod liver oil (CLO), since their DHA concentration was similar. Within fish fed diets containing increasing levels of AM, there was a linear increase in n-3 FA content, especially DHA, which varied in the body (0.02 to 0.41 g 100 g−1) and hepatopancreas (0.15 to 1.05 g 100 g−1). The morphology of the intestines and hepatopancreas was positively affected in AM-fed fish. Fish fed 10AM showed less accumulation of n-3 FAs in the body and hepatopancreas when compared to fish fed CLO. Therefore, AM is an adequate substitute for fish oil in winter diets for Nile tilapia, with the supplementation of 40AM promoting the best results regarding intestine and hepatopancreas morphophysiology. Full article
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17 pages, 2838 KiB  
Article
The Snakeskin Gourami (Trichopodus pectoralis) Tends to Exhibit XX/XY Sex Determination
by Thitipong Panthum, Nararat Laopichienpong, Ekaphan Kraichak, Worapong Singchat, Dung Ho My Nguyen, Nattakan Ariyaraphong, Syed Farhan Ahmad, Narongrit Muangmai, Prateep Duengkae, Surin Peyachoknagul, Tariq Ezaz and Kornsorn Srikulnath
Fishes 2021, 6(4), 43; https://doi.org/10.3390/fishes6040043 - 23 Sep 2021
Cited by 4 | Viewed by 3858
Abstract
The snakeskin gourami (Trichopodus pectoralis) has a high meat yield and is one of the top five aquaculture freshwater fishes in Thailand. The species is not externally sexually dimorphic, and its sex determination system is unknown. Understanding the sex determination system [...] Read more.
The snakeskin gourami (Trichopodus pectoralis) has a high meat yield and is one of the top five aquaculture freshwater fishes in Thailand. The species is not externally sexually dimorphic, and its sex determination system is unknown. Understanding the sex determination system of this species will contribute to its full-scale commercialization. In this study, a cytogenetic analysis did not reveal any between-sex differences in chromosomal patterns. However, we used genotyping-by-sequencing to identify 4 male-linked loci and 1 female-linked locus, indicating that the snakeskin gourami tends to exhibit an XX/XY sex determination system. However, we did not find any male-specific loci after filtering the loci for a ratio of 100:0 ratio of males:females. This suggests that the putative Y chromosome is young and that the sex determination region is cryptic. This approach provides solid information that can help identify the sex determination mechanism and potential sex determination regions in the snakeskin gourami, allowing further investigation of genetic improvements in the species. Full article
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14 pages, 2021 KiB  
Article
Shelf-Life Prediction of Glazed Large Yellow Croaker (Pseudosciaena crocea) during Frozen Storage Based on Arrhenius Model and Long-Short-Term Memory Neural Networks Model
by Yuanming Chu, Mingtang Tan, Zhengkai Yi, Zhaoyang Ding, Dazhang Yang and Jing Xie
Fishes 2021, 6(3), 39; https://doi.org/10.3390/fishes6030039 - 10 Sep 2021
Cited by 9 | Viewed by 2688
Abstract
In this study, the changes in centrifugal loss, TVB-N, K-value, whiteness and sensory evaluation of glazed large yellow croaker were analyzed at −10, −20, −30 and −40 °C storage. The Arrhenius prediction model and long-short-term memory neural networks (LSTM-NN) prediction model were developed [...] Read more.
In this study, the changes in centrifugal loss, TVB-N, K-value, whiteness and sensory evaluation of glazed large yellow croaker were analyzed at −10, −20, −30 and −40 °C storage. The Arrhenius prediction model and long-short-term memory neural networks (LSTM-NN) prediction model were developed to predict the shelf-life of the glazed large yellow croaker. The results showed that the quality of glazed large yellow croaker gradually decreased with the extension of frozen storage time, and the decrease in quality slowed down at lower temperatures. Both the Arrhenius model and the LSTM-NN prediction model were good tools for predicting the shelf-life of glazed large yellow croaker. However, for the relative error, the prediction accuracy of LSTM-NN (with a mean value of 7.78%) was higher than that of Arrhenius model (with a mean value of 11.90%). Moreover, the LSTM-NN model had a more intelligent, convenient and fast data processing capability, so the new LSTM-NN model provided a better choice for predicting the shelf-life of glazed large yellow croaker. Full article
(This article belongs to the Special Issue Sustainable Aquaculture and Fisheries)
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18 pages, 3199 KiB  
Article
Growth Performance, Feed Utilization, Gut Integrity, and Economic Revenue of Grey Mullet, Mugil cephalus, Fed an Increasing Level of Dried Zooplankton Biomass Meal as Fishmeal Substitutions
by Hamdy A. Abo-Taleb, Mohamed M. M. El-feky, Ahmad M. Azab, Mohamed M. Mabrouk, Mohamed A. Elokaby, Mohamed Ashour, Abdallah Tageldein Mansour, Othman F. Abdelzaher, Khamael M Abualnaja and Ahmed E. Sallam
Fishes 2021, 6(3), 38; https://doi.org/10.3390/fishes6030038 - 10 Sep 2021
Cited by 15 | Viewed by 3453
Abstract
Fishmeal is the most expensive feedstuff in the aquafeed and one of the most environmentally limiting factor of aquaculture development. Therefore, the search for alternative protein sources is a continuous process. The present feeding trial was conducted to evaluate the effects of replacing [...] Read more.
Fishmeal is the most expensive feedstuff in the aquafeed and one of the most environmentally limiting factor of aquaculture development. Therefore, the search for alternative protein sources is a continuous process. The present feeding trial was conducted to evaluate the effects of replacing fishmeal with zooplankton biomass meal (ZBM) on the growth performance, nutrient utilization, intestine, and liver histological changes of grey mullet, Mugil cephalus (initial weight of 0.10 ± 0.01 g). Five isoproteic (35% crude protein) and isolipidic (8% crude lipid) diets were formulated as the control diet (Z0) and the other four diets (Z25, Z50, Z75, and Z100), where 25%, 50%, 75%, and 100% of fishmeal was replaced by ZBM, respectively. After 60 days of feeding, the final weight, weight gain, and daily growth index of the grey mullet fed the Z100 diet were higher than those fed the control diet (p < 0.05). In addition, the better values of feed conversion ratio, protein efficiency ratio and lipid efficiency ratio were recorded in the fish fed with the Z100 diet. Additionally, the intestinal villus length, crypts depth, and muscle thickness were significantly improved with ZBM inclusion (p < 0.05). Meanwhile, there were no histopathological changes observed on the liver when compared with the control group. From the economic point of view, dietary substitution of fishmeal by ZBM (Z100) reduced the cost of diet formulation by 18% and the price per kg weight gain by about 40%. Overall, according to the findings of this study, substituting fishmeal with ZBM up to 100% could improve growth performance, feed utilization, gut health status, and profit ability of rearing M. cephalus juveniles. Full article
(This article belongs to the Special Issue Nutrition and Immunity of Fish and Shellfish)
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15 pages, 5140 KiB  
Article
Deep Heat: A Comparison of Water Temperature, Anemone Bleaching, Anemonefish Density and Reproduction between Shallow and Mesophotic Reefs
by Anne Haguenauer, Frédéric Zuberer, Gilles Siu, Daphne Cortese, Ricardo Beldade and Suzanne C. Mills
Fishes 2021, 6(3), 37; https://doi.org/10.3390/fishes6030037 - 9 Sep 2021
Cited by 3 | Viewed by 4029
Abstract
French Polynesia is experiencing increasing coral bleaching events in shallow waters triggered by thermal anomalies and marine heatwaves linked to climate change, a trend that is replicated worldwide. As sea surface thermal anomalies are assumed to lessen with depth, mesophotic deep reefs have [...] Read more.
French Polynesia is experiencing increasing coral bleaching events in shallow waters triggered by thermal anomalies and marine heatwaves linked to climate change, a trend that is replicated worldwide. As sea surface thermal anomalies are assumed to lessen with depth, mesophotic deep reefs have been hypothesized to act as refuges from anthropogenic and natural disturbances, the ‘deep reef refugia hypothesis’ (DRRH). However, evidence supporting the DRRH is either inconclusive or conflicting. We address this by investigating four assumptions of the DRRH focusing on the symbiotic association between anemones and anemonefish. First, we compare long-term temperature conditions between shallow (8 m) and mesophotic sites (50 m) on the island of Moorea from 2011–2020. Second, we compare the densities of the orange-fin anemonefish, Amphiprion chrysopterus between shallow and mesophotic (down to 60 m) reefs across three archipelagos in French Polynesia. Finally, we compare the percentage of anemone bleaching, as well as anemonefish reproduction, between shallow and mesophotic reefs. We found that the water column was well mixed in the cooler austral winter months with only a 0.19 °C difference in temperature between depths, but in the warmer summer months mixing was reduced resulting in a 0.71–1.03 °C temperature difference. However, during thermal anomalies, despite a time lag in warm surface waters reaching mesophotic reefs, there was ultimately a 1.0 °C increase in water temperature at both 8 and 50 m, pushing temperatures over bleaching thresholds at both depths. As such, anemone bleaching was observed in mesophotic reefs during these thermal anomalies, but was buffered compared to the percentage of bleaching in shallower waters, which was nearly five times greater. Our large-scale sampling across French Polynesia found orange-fin anemonefish, A. chrysopterus, in mesophotic zones in two high islands and one atoll across two archipelagos, extending its bathymetric limit to 60 m; however, orange-fin anemonefish densities were either similar to, or 25–92 times lower than in shallower zones. Three spawning events were observed at 50 m, which occurred at a similar frequency to spawning on shallower reefs at the same date. Our findings of thermal anomalies and bleaching in mesophotic reefs, coupled with mainly lower densities of anemonefish in mesophotic populations, suggest that mesophotic reefs show only a limited ability to provide refugia from anthropogenic and natural disturbances. Full article
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17 pages, 3392 KiB  
Article
SNP Development in Penaeus vannamei via Next-Generation Sequencing and DNA Pool Sequencing
by Yongyu Huang, Lili Zhang, Hui Ge, Guodong Wang, Shiyu Huang and Zhangwu Yang
Fishes 2021, 6(3), 36; https://doi.org/10.3390/fishes6030036 - 7 Sep 2021
Cited by 2 | Viewed by 2419
Abstract
Next-generation sequencing and pool sequencing have been widely used in SNP (single-nucleotide polymorphism) detection and population genetics research; however, there are few reports on SNPs related to the growth of Penaeus vannamei. The purpose of this study was to call SNPs from rapid-growing [...] Read more.
Next-generation sequencing and pool sequencing have been widely used in SNP (single-nucleotide polymorphism) detection and population genetics research; however, there are few reports on SNPs related to the growth of Penaeus vannamei. The purpose of this study was to call SNPs from rapid-growing (RG) and slow-growing (SG) individuals’ transcriptomes and use DNA pool sequencing to assess the reliability of SNPs. Two parameters were applied to detect SNPs. One parameter was the p-values generated using Fisher’s exact test, which were used to calculate the significance of allele frequency differences between RG and SG. The other one was the AFI (minor allele frequency imbalance), which was defined to highlight the fold changes in MAF (minor allele frequency) values between RG and SG. There were 216,015 hypothetical SNPs, which were obtained based on the transcriptome data. Finally, 104 high-quality SNPs and 96,819 low-quality SNPs were predicted. Then, 18 high-quality SNPs and 17 low-quality SNPs were selected to assess the reliability of the detection process. Here, 72.22% (13/18) accuracy was achieved for high-quality SNPs, while only 52.94% (9/17) accuracy was achieved for low-quality SNPs. These SNPs enrich the data for population genetics studies of P. vannamei and may play a role in the development of SNP markers for future breeding studies. Full article
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11 pages, 879 KiB  
Article
Using Observed Residual Error Structure Yields the Best Estimates of Individual Growth Parameters
by Marcelo V. Curiel-Bernal, E. Alberto Aragón-Noriega, Miguel Á. Cisneros-Mata, Laura Sánchez-Velasco, S. Patricia A. Jiménez-Rosenberg and Alejandro Parés-Sierra
Fishes 2021, 6(3), 35; https://doi.org/10.3390/fishes6030035 - 2 Sep 2021
Cited by 4 | Viewed by 2581
Abstract
Obtaining the best possible estimates of individual growth parameters is essential in studies of physiology, fisheries management, and conservation of natural resources since growth is a key component of population dynamics. In the present work, we use data of an endangered fish species [...] Read more.
Obtaining the best possible estimates of individual growth parameters is essential in studies of physiology, fisheries management, and conservation of natural resources since growth is a key component of population dynamics. In the present work, we use data of an endangered fish species to demonstrate the importance of selecting the right data error structure when fitting growth models in multimodel inference. The totoaba (Totoaba macdonaldi) is a fish species endemic to the Gulf of California increasingly studied in recent times due to a perceived threat of extinction. Previous works estimated individual growth using the von Bertalanffy model assuming a constant variance of length-at-age. Here, we reanalyze the same data under five different variance assumptions to fit the von Bertalanffy and Gompertz models. We found consistent significant differences between the constant and nonconstant error structure scenarios and provide an example of the consequences using the growth performance index ϕ′ to show how using the wrong error structure can produce growth parameter values that can lead to biased conclusions. Based on these results, for totoaba and other related species, we recommend using the observed error structure to obtain the individual growth parameters. Full article
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15 pages, 2961 KiB  
Article
Conservative Scoring Approach in Productivity Susceptibility Analysis Leads to an Overestimation of Vulnerability: A Study from the Hilsa Gillnet Bycatch Stocks of Bangladesh
by Hasan Faruque and Hiroyuki Matsuda
Fishes 2021, 6(3), 33; https://doi.org/10.3390/fishes6030033 - 24 Aug 2021
Cited by 4 | Viewed by 3102
Abstract
Despite different approaches used to assign the risk scores for missing information in productivity susceptibility analysis (PSA)—a widely used semi-quantitative risk assessment tool for target and non-target fisheries stocks—for the selected attributes of a given species, no formal comparison has been made between [...] Read more.
Despite different approaches used to assign the risk scores for missing information in productivity susceptibility analysis (PSA)—a widely used semi-quantitative risk assessment tool for target and non-target fisheries stocks—for the selected attributes of a given species, no formal comparison has been made between scoring approaches in terms of how well they can predict species vulnerability. The present study evaluated the PSA findings of 21 bycatch stocks of the Hilsa (Tenualosa ilisha) gillnet fishery of Bangladesh using two different scoring approaches (the conservative scoring approach, CSA; and the alternative scoring approach, ASA) to determine the most reliable approach to minimize false estimates of species vulnerability. Our analysis revealed that the V scores increased by 0.0−0.20 with a mean value of 0.09 for 21 selected bycatches when CSA was applied. The inconsistency between the vulnerability (V)-score-suggested fishing status (V ≤ 1.8 = underfishing, V > 1.8 = overfishing) and the fishing status defined by exploitation rate (E > 0.5 = overfishing, E < 0.5 = underfishing) were 38.1% and 19.0% under CSA and ASA, respectively. Likewise, the consistency between the V-score-suggested fishing status and fishers’ perceived catch trends was found to be higher when using ASA than when using CSA. Our analysis suggests that CSA could overestimate species vulnerability. Therefore, ASA is more reliable than CSA in PSA, which may increase the confidence of fisheries stakeholders in PSA. Full article
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13 pages, 1460 KiB  
Article
In Vitro Antimicrobial and Antibiofilm Activity of S-(-)-Limonene and R-(+)-Limonene against Fish Bacteria
by Elisia Gomes da Silva, Guerino Bandeira Junior, Juliana Felipetto Cargnelutti, Roberto Christ Vianna Santos, André Gündel and Bernardo Baldisserotto
Fishes 2021, 6(3), 32; https://doi.org/10.3390/fishes6030032 - 19 Aug 2021
Cited by 8 | Viewed by 2875
Abstract
Brazilian fish farming goes together with the emergence of numerous bacterial diseases, with Aeromonas hydrophila being the main bacterial pathogen. As a consequence, antimicrobials are excessively used. Considering that antimicrobials are relatively stable and nonbiodegradable, medicinal plants and their phytochemicals have been used [...] Read more.
Brazilian fish farming goes together with the emergence of numerous bacterial diseases, with Aeromonas hydrophila being the main bacterial pathogen. As a consequence, antimicrobials are excessively used. Considering that antimicrobials are relatively stable and nonbiodegradable, medicinal plants and their phytochemicals have been used as alternative treatments of bacteriosis in fish farming. Limonene is a monoterpene available in two enantiomers: R-(+)-limonene and S-(-)-limonene. This study analyzed the antibacterial activity of the phytochemicals S-(-)-limonene and R-(+)-limonene against some bacteria isolated from silver catfish (Rhamdia quelen). Furthermore, by means of spectrophotometry and atomic force microscopy, we also investigated the combination therapy of phytochemicals with antimicrobials and their activity in terms of inhibiting biofilm formation. Six clinical isolates and a standard strain were selected for antimicrobial activity testing. Biofilm formation was tested in 96-well plates and nylon cubes. The most sensitive of the strains tested was the A. hydrophila strain (MF 372510). S-(-)-limonene and R-(+)-limonene had high minimum inhibitory concentrations; however, they strongly inhibited A. hydrophila biofilm formation. R-(+)-limonene and S-(-)-limonene had an additive effect when combined with florfenicol and an antagonistic effect with oxytetracycline. In general, the phytochemicals tested showed strong antibiofilm activity against A. hydrophila, and when in combination therapy with florfenicol, they showed an additive effect against the treatment of A. hydrophila. Full article
(This article belongs to the Special Issue Phytochemicals in Aquaculture)
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6 pages, 384 KiB  
Communication
Dusky Grouper Epinephelus marginatus Growth and Survival When Exposed to Different Photoperiods
by Paulo Henrique R. Aride, Maria Fernanda S. Gomes, Darlan G. Azevedo, Gilson R. Sangali, Ana Cláudia F. Silva, Henrique D. Lavander, André B. Souza, Marcelo F. Polese, Douglas C. Mattos, Lucas A. Bassul, Leonardo D. Cardoso, Adriano T. Oliveira and Caterina Faggio
Fishes 2021, 6(3), 31; https://doi.org/10.3390/fishes6030031 - 12 Aug 2021
Cited by 6 | Viewed by 2911
Abstract
Photoperiod is considered an environmental factor that influences reproduction and the growth processes of fish throughout the year. In the present study, we subjected dusky grouper Epinephelus marginatus to different photoperiods in order to evaluate growth and survival. Juvenile dusky grouper were randomly [...] Read more.
Photoperiod is considered an environmental factor that influences reproduction and the growth processes of fish throughout the year. In the present study, we subjected dusky grouper Epinephelus marginatus to different photoperiods in order to evaluate growth and survival. Juvenile dusky grouper were randomly distributed in twelve 100 L tanks containing four fish per aquarium. The fish were exposed to continuous light, normal photoperiod or continuous darkness for 50 days. Fish were fed 3% of their total biomass, twice a day, and the diet consisted of ground commercial dry pellets (42% crude protein, 12% humidity, 9% ether extract, 15% mineral matter, 4% crude fiber, 3.5% calcium and 3% vitamin C, in accordance with the manufacturer’s instructions). There was no mortality during the experiment. After 50 days, the best performance was found for exposure to continuous light (24 h artificial light). The final weight of the fish reared under continuous light was significantly higher than that of the fish exposed to continuous darkness. The specific growth rate of the fish exposed to continuous light was significantly higher than that of the fish exposed to the natural photoperiod and to continuous darkness. Modifications to the photoperiod can be a key factor in increasing the efficacy of current production and the improvement of current aquaculture protocols. Full article
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17 pages, 1878 KiB  
Article
Bioproduction of Prodigiosin from Fishery Processing Waste Shrimp Heads and Evaluation of Its Potential Bioactivities
by Van Bon Nguyen, San-Lang Wang, Anh Dzung Nguyen, Tu Quy Phan, Kuaanan Techato and Siriporn Pradit
Fishes 2021, 6(3), 30; https://doi.org/10.3390/fishes6030030 - 11 Aug 2021
Cited by 17 | Viewed by 3701
Abstract
The aim of this work was to reuse a fish processing waste, shrimp head powder (SHP), for the production of prodigiosin (PG) via microbial technology and to assess its potential bioactivities. PG was produced in a 12 L-bioreactor system, and the highest PG [...] Read more.
The aim of this work was to reuse a fish processing waste, shrimp head powder (SHP), for the production of prodigiosin (PG) via microbial technology and to assess its potential bioactivities. PG was produced in a 12 L-bioreactor system, and the highest PG productivity of 6310 mg L−1 was achieved when Serratia marcescens CC17 was used for fermentation in a novel designed medium (6.75 L) containing 1.5% C/N source (SHP/casein = 9/1), 0.02% K2SO4, ans 0.025% Ca3(PO4)2, with initial pH 7.0, and fermentation was performed at 28 °C for 8 h. The purified PG showed moderate antioxidants, efficient anti-NO (anti-nitric oxide), and acetylcholinesterase (AChE) inhibitory activities. In a docking study, PG showed better binding energy scores (−12.3 kcal/mol) and more interactions (6 linkages) with several prominent amino acids in the biding sites on AChE that were superior to those of Berberine chloride (−10.8 kcal/mol and one linkage). Notably, this is the first investigation using shrimp heads for the mass bioproduction of PG with high productivity, and Ca3(PO4)2 salt was also newly found to significantly enhance PG production by S. marcescens. This study also provided available data on the anti-NO and anti-AChE effects of PG, especially from the docking simulation PG towards AChE that was described for the first time in this study. The above results suggest that SHP is a good material for the cost-effective bioproduction of PG, which is a potential candidate for anti-NO and anti-Alzheimer drugs. Full article
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10 pages, 1032 KiB  
Article
Cryobank of Mediterranean Brown Trout Semen: Evaluation of the Use of Frozen Semen up to Six Hours Post-Collection
by Giusy Rusco, Michele Di Iorio, Roberta Iampietro, Alessandra Roncarati, Stefano Esposito and Nicolaia Iaffaldano
Fishes 2021, 6(3), 26; https://doi.org/10.3390/fishes6030026 - 2 Aug 2021
Cited by 3 | Viewed by 2475
Abstract
The aim of this study was to evaluate the effects of different cold-storage time intervals between collection and semen-freezing on both fresh and cryopreserved semen motility parameters and the post-thaw fertilizing ability of Mediterranean brown trout semen. The ejaculates were split into six [...] Read more.
The aim of this study was to evaluate the effects of different cold-storage time intervals between collection and semen-freezing on both fresh and cryopreserved semen motility parameters and the post-thaw fertilizing ability of Mediterranean brown trout semen. The ejaculates were split into six aliquots and stored on ice from 1 to 6 h, until freezing. Fresh and post-thaw sperm motility was evaluated by a Computer-Assisted Sperm Analysis system, whilst the fertilizing ability was assessed by in vivo trials. In fresh semen, at 3 h of storage, a significant decrease of total motility, linear movement (STR, LIN) and beat cross frequency (BCF) was recorded, whilst the amplitude of lateral displacement of the spermatozoon head (ALH) underwent a significant increase. In frozen semen, no significant difference was observed for all the motility parameters evaluated, except for the total motility between 1 and 6 h of storage and the duration of sperm movement between 1 and 5 h. Cold-storage time did not significantly affect the percentage of live embryos following the use of frozen semen. In conclusion, our results showed that, if necessary, the Mediterranean brown trout semen can be frozen even until 6 h post-collection without losing its fertilizing ability. Full article
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21 pages, 2300 KiB  
Article
Evaluating the Sampling Design of a Long-Term Community-Based Estuary Monitoring Program
by Jess A. Kidd, Monica Boudreau, Robert C. Bailey, Michael R. van den Heuvel, Mark R. Servos and Simon C. Courtenay
Fishes 2021, 6(3), 27; https://doi.org/10.3390/fishes6030027 - 2 Aug 2021
Cited by 1 | Viewed by 2925
Abstract
Community-based monitoring programs (CBMPs) are a cost-effective option to collect the long-term data required to effectively monitor estuaries. Data quality concerns have caused some CBMP datasets, which could fill knowledge gaps for aquatic ecosystems, to go unused. The Community Aquatic Monitoring Program (CAMP) [...] Read more.
Community-based monitoring programs (CBMPs) are a cost-effective option to collect the long-term data required to effectively monitor estuaries. Data quality concerns have caused some CBMP datasets, which could fill knowledge gaps for aquatic ecosystems, to go unused. The Community Aquatic Monitoring Program (CAMP) is a CBMP that has collected littoral nekton assemblage data from estuaries in the southern Gulf of St. Lawrence since 2003. Concerns with the CAMP sampling design (station placement and numbers) have prevented decision-makers from using the data to inform estuary health assessments. This study tested if CAMP’s sampling design that accommodates volunteer participation provides similar information as a scientific sampling approach. Six CAMP stations and six stations selected using a stratified random design were sampled at ten estuaries. A permutational-MANOVA revealed nekton assemblages were generally not significantly different between the two sampling designs. The current six CAMP stations are sufficient to detect the larger differences in species abundances that may indicate differences in estuary condition. The predicted increase in precision (2%) with twelve stations is not substantive enough to warrant an increased sampling effort. CAMP’s scientific utility is not limited by station selection bias or numbers. Furthermore, well-designed CBMPs can produce comparable data to scientific studies. Full article
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18 pages, 1422 KiB  
Article
Integrating Literature, Biodiversity Databases, and Citizen-Science to Reconstruct the Checklist of Chondrichthyans in Cyprus (Eastern Mediterranean Sea)
by Ioannis Giovos, Fabrizio Serena, Dimitra Katsada, Athanasios Anastasiadis, Adi Barash, Charis Charilaou, Jason M. Hall-Spencer, Fabio Crocetta, Alexander Kaminas, Demetris Kletou, Mary Maximiadi, Vasileios Minasidis, Dimitrios K. Moutopoulos, Roxani Naasan Aga-Spyridopoulou, Ioannis Thasitis and Periklis Kleitou
Fishes 2021, 6(3), 24; https://doi.org/10.3390/fishes6030024 - 26 Jul 2021
Cited by 8 | Viewed by 6574
Abstract
Chondrichthyans are apex predators influencing the trophic web through a top-down process thus their depletion will affect the remaining biota. Notwithstanding that, research on chondrichthyans is sparse or data-limited in several biogeographic areas worldwide, including the Levantine Sea. We revise and update the [...] Read more.
Chondrichthyans are apex predators influencing the trophic web through a top-down process thus their depletion will affect the remaining biota. Notwithstanding that, research on chondrichthyans is sparse or data-limited in several biogeographic areas worldwide, including the Levantine Sea. We revise and update the knowledge of chondrichthyans in Cyprus based on a bibliographic review that gains information retrieved from peer-reviewed and grey literature, Global Biodiversity Information Facility (135 records of at least 18 species) and the Ocean Biodiversity Information System (65 records of at least14 species), and the citizen science project Mediterranean Elasmobranchs Citizen Observations (117 records per 23 species). Our updated checklist reports 60 species that account for about 70% of the Mediterranean chondrichthyan biota. The list includes 15 more species than the previous checklist and our study reports three new species for Cyprus waters, namely the blackmouth catshark Dalatias licha, the round fantail stingray Taeniurops grabatus, and the sawback angelshark Squatina aculeata. Our research highlights the need for conservation measures and more studies regarding the highly threatened blackchin guitarfish Glaucostegus cemiculus and the devil ray Mobula mobular, and stresses the importance for training a new generation of observers to strengthen the knowledge and conservation of elasmobranchs in the region. Full article
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19 pages, 1059 KiB  
Article
Growth, Chemical Composition, Histology and Antioxidant Genes of Atlantic Salmon (Salmo salar) Fed Whole or Pre-Processed Nannochloropsis oceanica and Tetraselmis sp.
by Solveig Lysfjord Sørensen, Ateshm Ghirmay, Yangyang Gong, Dalia Dahle, Ghana Vasanth, Mette Sørensen and Viswanath Kiron
Fishes 2021, 6(3), 23; https://doi.org/10.3390/fishes6030023 - 23 Jul 2021
Cited by 9 | Viewed by 3913
Abstract
New sustainable feed ingredients are a necessity for the salmon aquaculture industry. In this study, we examined the effect of pre-extrusion processing of two microalgae, Nannochloropsis oceanica and Tetraselmis sp., on the growth, fatty acid content in the flesh and health of [...] Read more.
New sustainable feed ingredients are a necessity for the salmon aquaculture industry. In this study, we examined the effect of pre-extrusion processing of two microalgae, Nannochloropsis oceanica and Tetraselmis sp., on the growth, fatty acid content in the flesh and health of Atlantic salmon. The fish were fed one of the following five diets for nine weeks: (1) CO: a fish meal-based control (basal) diet, (2) NU: a Nannochloropsis diet, (3) NE: a pre-extruded Nannochloropsis diet, (4) TU: a Tetraselmis diet, and (5) TE: a pre-extruded Tetraselmis diet. The algae-incorporated diets contained 30% of the respective microalgae. Our results showed that the best growth performance was achieved by the CO diet, followed by the NE diets. Feeding of unprocessed Nannochloropsis and Tetraselmis resulted in a significant reduction in enterocyte vacuolization compared to the CO feeding. A significant effect of processing was noted in the fillet fatty acid content, the intestine and liver structure and the expression of selected genes in the liver. The expression of antioxidant genes in both the liver and intestine, and the accumulation of different fatty acids in the fillet and liver of the extruded algae-fed groups, warrants further investigation. In conclusion, based on the short-term study, 30% inclusion of the microalgae Nannochloropsis oceanica and Tetraselmis sp. can be considered in Atlantic salmon feeds. Full article
(This article belongs to the Special Issue Integration of Nutrition and Physiology in Aquatic Animals)
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13 pages, 1287 KiB  
Article
Dynamics of Two Anadromous Species in a Dam Intersected River: Analysis of Two 100-Year Datasets
by Ulisses M. Azeiteiro, Mário J. Pereira, Amadeu M. V. M. Soares, Heitor O. Braga, Fernando Morgado, Magda C. Sousa, João M. Dias and Carlos Antunes
Fishes 2021, 6(2), 21; https://doi.org/10.3390/fishes6020021 - 5 Jun 2021
Cited by 8 | Viewed by 3954
Abstract
Long-term time-series datasets are key for assessing the population dynamics of fish species with economic interest. This study examines two 100-year datasets for sea lamprey Petromyzon marinus and allis shad Alosa alosa from the Minho River. This basin on the Iberian Peninsula is [...] Read more.
Long-term time-series datasets are key for assessing the population dynamics of fish species with economic interest. This study examines two 100-year datasets for sea lamprey Petromyzon marinus and allis shad Alosa alosa from the Minho River. This basin on the Iberian Peninsula is home to one of the largest populations at the southern distribution limit of these critically endangered anadromous fish species. Besides assessing the importance of the environmental drivers of fish capture data (temperature, salinity, upwelling, precipitation, and climatic oscillation), this study also assesses how dam construction affected these populations using intervention analysis—A statistical tool to detect significant breakpoints in time series data. Results showed contrasting trends between sea lamprey and allis shad, with the number of captured fish from the first progressively improving from 1914 to 2017, and the latter recording a significant decline over time. Although no significant correlations were detected between fishing data and environmental variables, some of the identified breakpoints in the time series data matched the dates when the major dams in Minho River were built. Other historical activities associated with mining might explain the notable changes detected in the trends, while issues associated with illegal, unreported, and unregulated capture data are also discussed. Full article
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13 pages, 1768 KiB  
Article
Effect of 3-Aminobenzoic Acid Ethyl Ester Methanesulfonate (MS-222) on Quality of Marine Cultured Turbot (Scophthalmus maximus) during Simulated Transport in Water
by Jie Cao, Qi Wang, Jun Mei and Jing Xie
Fishes 2021, 6(2), 20; https://doi.org/10.3390/fishes6020020 - 19 May 2021
Cited by 10 | Viewed by 3258
Abstract
This study evaluated the effect of different concentrations (20, 40 and 60 mg/L) of 3-aminobenzoic acid ethyl ester methanesulfonate (MS-222) on the quality changes in turbot during simulated transport in water. The results showed that the ammonia nitrogen content in the transportation water [...] Read more.
This study evaluated the effect of different concentrations (20, 40 and 60 mg/L) of 3-aminobenzoic acid ethyl ester methanesulfonate (MS-222) on the quality changes in turbot during simulated transport in water. The results showed that the ammonia nitrogen content in the transportation water of each sample increased significantly, and the dissolved oxygen level decreased. The dissolved oxygen content in MS-222-treated samples was higher than that of control group (CK) samples. For turbot flesh quality, simulated transport in water led to a decrease in moisture, fat and protein contents in all samples. The MS-222-treated turbot samples showed higher pH values, glycogen contents, springiness and chewiness values and lower lactic acid contents comparing with the CK samples during simulated transport in water. In addition, the fresh and bitter amino acids in the muscle of turbot increased in each treatment group compared to the non-transported fish at the end of the simulated transport. The results showed that MS-222 treatment could retard the turbot transport stress and improve the quality of turbot during simulated transport in water. Full article
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13 pages, 1952 KiB  
Article
Effects of Different Densities of Sea Grape Caulerpa lentillifera on Water Quality, Growth and Survival of the Whiteleg Shrimp Litopenaeus vannamei in Polyculture System
by Khanh Van Ly, David Kamau Murungu, Dung Phuong Nguyen and Ngoc Anh Thi Nguyen
Fishes 2021, 6(2), 19; https://doi.org/10.3390/fishes6020019 - 5 May 2021
Cited by 8 | Viewed by 6609
Abstract
The integrated aquaculture-seaweed system has been identified as a bio-mitigation strategy to overcome environmental damage, improve the efficiency of nutrient use, maintain good water quality, and ensure the system’s sustainability. This study was conducted to determine the appropriate density of sea grape ( [...] Read more.
The integrated aquaculture-seaweed system has been identified as a bio-mitigation strategy to overcome environmental damage, improve the efficiency of nutrient use, maintain good water quality, and ensure the system’s sustainability. This study was conducted to determine the appropriate density of sea grape (Caulerpa lentillifera) in polyculture with whiteleg shrimp (Litopenaeus vannamei) in the same culture tank. Five treatments were randomly designed in triplicate tanks where shrimp was monocultured (without sea grape) as a control treatment and four polyculture treatments with different seaweed density levels (0.5, 1, 1.5, and 2 kg m−3) for 56 days. The results showed that polyculture of shrimp and sea grape significantly reduced the concentrations of total ammonia nitrogen (TAN), nitrite (NO2), nitrate (NO3), and phosphate (PO43−) in the rearing tanks and significantly improved (p < 0.05) the growth rate (6.67–6.76% day−1), survival (73.3–78.5%), and production of shrimp (3.44–3.87 kg m−3) compared to monoculture (6.24% day−1, 54.8%, and 2.02 kg m−3, respectively). Applying shrimp and sea grape polyculture at a density of 1 kg m−3 provided a relatively better shrimp performance and feed conversion ratio than other seaweed densities, although not significantly different among polyculture treatments. The findings suggested that sea grape could be used at densities of 0.5–2 kg m−3 in polyculture with whiteleg shrimp, of which 1 kg m−3 resulted in higher production and feed efficiency. Full article
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12 pages, 27488 KiB  
Article
Molecular Characterization of Hsp47 in Grass Carp (Ctenopharyngodon idella) and Its Correlation with Type I Collagen in Response to Fish Aerobic Exercise
by Xiao Liang, Ying Wan, Zhiyuan Shen, Yanmei Liu, Dapeng Li, Li Li, Rong Tang and Xi Zhang
Fishes 2021, 6(2), 17; https://doi.org/10.3390/fishes6020017 - 23 Apr 2021
Cited by 6 | Viewed by 3017
Abstract
Heat shock protein 47 (Hsp47) is a collagen-specific molecular chaperone that is indispensable for molecular maturation of collagen. In this study, hsp47 and hsp47-like cDNAs were cloned and characterized in grass carp (Ctenopharyngodon idella). The cDNAs were 1212 and 1218 base [...] Read more.
Heat shock protein 47 (Hsp47) is a collagen-specific molecular chaperone that is indispensable for molecular maturation of collagen. In this study, hsp47 and hsp47-like cDNAs were cloned and characterized in grass carp (Ctenopharyngodon idella). The cDNAs were 1212 and 1218 base pairs long, respectively, and included an open reading frame encoding 403 and 405 amino acids. The molecular phylogeny based on the deduced amino acid sequences indicated that the correct sequences of the hsp47 and hsp47-like cDNA were obtained and the deduced proteins clustered distinctly into teleost clades. Primary structure analysis and characterization of Hsp47 and Hsp47-like shared the basic structure and biofunctions of Hsp47 in vertebrates. The spatial pattern of gene expression revealed that hsp47 and hsp47-like were relatively ubiquitous in different tissues and highly expressed in heart and skin. The expression levels of hsp47 and hsp47-like and type I collagen mRNAs varied similarly in different tissues. Type I collagen content increased significantly with the increase of water velocity in the muscle of grass carp in response to aerobic exercise. Among the gene expression changes of hsp47, hsp47-like, col1a1 and col1a2 in muscle that occurred in response to aerobic exercise, the change of type I collagen was most strongly correlated with hsp47 expression. Additionally, col1a1 showed the highest correlation with hsp47-like and col1a2 showed the highest correlation with hsp47. These findings suggest that grass carp Hsp47 and Hsp47-like are closely related to type I collagen synthesis. This study firstly suggests fish aerobic exercise can improve type I collagen content and Hsp47 gene expression in muscle of grass carp. Full article
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13 pages, 2233 KiB  
Article
Wound-Induced Changes in Antioxidant Enzyme Activities in Skin Mucus and in Gene Expression in the Skin of Gilthead Seabream (Sparus aurata L.)
by Cristóbal Espinosa-Ruíz and María Ángeles Esteban
Fishes 2021, 6(2), 15; https://doi.org/10.3390/fishes6020015 - 18 Apr 2021
Cited by 14 | Viewed by 3769
Abstract
This study investigated the antioxidant enzyme activities in the skin mucus of gilthead seabream (Sparus aurata L.) at 3 and 7 days post-wounding (dpw). The expression levels of the genes that encode stress proteins (grp170, grp94, grp75, sod [...] Read more.
This study investigated the antioxidant enzyme activities in the skin mucus of gilthead seabream (Sparus aurata L.) at 3 and 7 days post-wounding (dpw). The expression levels of the genes that encode stress proteins (grp170, grp94, grp75, sod and hsp70) and skin regeneration-related proteins (tf, igf1, tgfb1, der1, apo1 and erdj3) in the skin also were determined. Mucus and skin samples were obtained from the left and right flanks of non-wounded and wounded fish. In both flanks of the wounded fish, catalase and glutathione reductase activities in the skin mucus increased (p < 0.05) at 3 and 7 dpw (100 ± 31% and 111 ± 25%, respectively), whereas superoxide dismutase activity increased (p < 0.05) only at 7 dpw (135 ± 15%). The expression levels of stress proteins in the skin of the wounded flank of the wounded fish mainly increased at 7 dpw (grp170 increased to 288 ± 85%, grp94 to 502 ± 143%, grp75 to 274 ± 69%, sod to 569 ± 99%, and hsp70 increased to 537 ± 14%) (p < 0.05). However, the expression levels of the tissue regeneration-related genes varied depending on the flank investigated, on the experimental time, and on the gene studied. To the best of our knowledge, this is the first work to determine the effect of a wound in different skin parts of the same fish. Full article
(This article belongs to the Special Issue New Insights on Fish Immunology)
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11 pages, 2435 KiB  
Article
Effects of Wastewater Treatment Plant Effluent in a Receiving Stream on Reproductive Behavior of Fathead Minnows (Pimephales promelas)
by Joseph M. Leese, Julia McMahon and Joseph C. Colosi
Fishes 2021, 6(2), 14; https://doi.org/10.3390/fishes6020014 - 12 Apr 2021
Cited by 3 | Viewed by 2345
Abstract
Wastewater treatment plant effluents contain a variety of endocrine disrupting chemicals (EDCs), including chemicals with estrogenic activity such as 17β-estradiol (E2), 17α-ethinyl estradiol (EE2), and nonylphenols. These substances can affect both behavior and physiology in vertebrate animals. To explore the presence and effects [...] Read more.
Wastewater treatment plant effluents contain a variety of endocrine disrupting chemicals (EDCs), including chemicals with estrogenic activity such as 17β-estradiol (E2), 17α-ethinyl estradiol (EE2), and nonylphenols. These substances can affect both behavior and physiology in vertebrate animals. To explore the presence and effects of these EDCs in a natural setting, juvenile and adult male fathead minnows, Pimephales promelas, were held in cages upstream and downstream of the effluent site of a wastewater treatment plant for 21 days and subsequently tested for changes in reproductive behaviors and production of vitellogenin. Additionally, estrogenic activity in the stream was measured using a yeast bioassay. Estrogenicity was found to be significantly higher downstream of the wastewater effluent when compared to levels upstream. Vitellogenin levels did not show a correlational pattern with levels of estrogenicity in the water, but two measures of reproductive behaviors occurred significantly less often in downstream males than upstream males. This suggests that a brief (three-week) exposure to stream water containing wastewater treatment plant effluent can bring about changes in reproductive behavior of fish and that behavior may be more sensitive to low levels of environmental endocrine disruptors than vitellogenin production. Full article
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7 pages, 949 KiB  
Communication
Black Caviar Perturbs Reflection of Russian Geography: A Research Note of Aquaculture-Triggered Place Naming Puzzle
by Dmitry A. Ruban and Vladimir A. Ermolaev
Fishes 2021, 6(2), 13; https://doi.org/10.3390/fishes6020013 - 6 Apr 2021
Cited by 3 | Viewed by 3173
Abstract
Black caviar is often thought to be a typically Russian luxurious food product. Recently, its production has extended due to sturgeon aquaculture development. The analysis of the geographical affinities of the full-cycle companies and their aquaculture-sourced black caviar implies that the majority of [...] Read more.
Black caviar is often thought to be a typically Russian luxurious food product. Recently, its production has extended due to sturgeon aquaculture development. The analysis of the geographical affinities of the full-cycle companies and their aquaculture-sourced black caviar implies that the majority of them employs the Russian Caviar brand and/or refers to the Russian traditions and history. However, names, brands, and/or product positioning of several companies tend to mention geographical objects associated with the tradition places of black caviar production (Astrakhan, the Caspian Sea, and the Volga River), whereas these companies are located in the other, sometimes remote places (with distances over 1000 km). Such marketing solutions of black caviar producers perturb reflection of the Russian geography. The geographical indication (place of origin) of this fish product needs improvement, which is a task for companies, state, and professional societies. Full article
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12 pages, 1438 KiB  
Article
Mechanism of Delayed Convulsion in Fish: The Actions of Norepinephrine in Spinal Cord
by Cheng-Linn Lee, Yuri Kominami and Hideki Ushio
Fishes 2021, 6(2), 12; https://doi.org/10.3390/fishes6020012 - 31 Mar 2021
Cited by 2 | Viewed by 5247
Abstract
Cranial spiking (CS) is among the most popular slaughtering methods for delaying the rigor mortis progress of fish muscles. However, it may cause a convulsion (subsequently referred to as delayed convulsion), which undermines the meat quality and taste. This study aimed to elucidate [...] Read more.
Cranial spiking (CS) is among the most popular slaughtering methods for delaying the rigor mortis progress of fish muscles. However, it may cause a convulsion (subsequently referred to as delayed convulsion), which undermines the meat quality and taste. This study aimed to elucidate the mechanism underlying the delayed convulsion and examine its influence on ATP consumption. Ten carps, nine tilapias, ten rainbow trouts, two ayus, three greenling, thirty-five red seabreams, two striped jack and two stone flounders underwent CS around the medulla oblongata area, which induced different delayed convulsion profiles specific to each species. To investigate the norepinephrine (NE) actions related to delayed convulsion, 27 red seabreams, a representative fish species that exhibits delayed convulsion, were treated with a monoamine-depleting agent, reserpine, or with a monoamine oxidase inhibitor, pargyline, two hours before CS. Spinal cord destruction (SCD) was employed to completely prevent spinal cord functions of the fish in another group. Compared with the control group (CS only), the reserpine, pargyline, and SCD groups showed significantly inhibited delayed convulsion and ATP consumption. This suggests that delayed convulsion is the main ATP-consuming response. Our findings suggest that delayed clonic convulsion in red seabreams is associated with the rapid decrease in spinal cord NE levels, which triggered the rebound motor neuron hyperactivity. Full article
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13 pages, 298 KiB  
Article
Effects of Dissolved Potassium on Growth Performance, Body Composition, and Welfare of Juvenile African Catfish (Clarias gariepinus)
by Lisa Carolina Wenzel, Sebastian Marcus Strauch, Ep Eding, Francisco Xose Presas-Basalo, Berit Wasenitz and Harry Wilhelm Palm
Fishes 2021, 6(2), 11; https://doi.org/10.3390/fishes6020011 - 28 Mar 2021
Cited by 10 | Viewed by 4784
Abstract
Optimal crop production in aquaponics is influenced by water pH and potassium concentrations. The addition of potassium hydroxide (KOH) into the recirculating aquaculture system (RAS) may benefit aquaponics by increasing the water pH for better biofilter activity and supplementing K for better plant [...] Read more.
Optimal crop production in aquaponics is influenced by water pH and potassium concentrations. The addition of potassium hydroxide (KOH) into the recirculating aquaculture system (RAS) may benefit aquaponics by increasing the water pH for better biofilter activity and supplementing K for better plant growth and quality. We investigated the growth, feed conversion, body composition and welfare indicators of juvenile African catfish (Clarias gariepinus) treated with four concentrations of K (K0 = 2, K200 = 218, K400 = 418, and K600 = 671 mg L−1). While growth, feed conversion and final body composition were unaffected, the feeding time and individual resting significantly increased with increasing K+. The swimming activity and agonistic behavior were reduced significantly under increased concentrations of K+. Leftover feed and the highest number of skin lesions were observed under K600. We suggest that K+ concentrations between 200 and 400 mg L−1 can improve the welfare status of juvenile African catfish. This enables the application of KOH in RAS to supply alkalinity to achieve optimum nitrification at minimum water exchange and improve the nutritional profile of the process water with benefits for the welfare status of African catfish and aquaponics plant production and quality. Full article
(This article belongs to the Special Issue Environmental Impacts of Land-Based Aquaculture)
20 pages, 2239 KiB  
Article
Numeric Simulation Demonstrates That the Upstream Movement of Invasive Bigheaded Carp Can Be Blocked at Sets of Mississippi River Locks-and-Dams Using a Combination of Optimized Spillway Gate Operations, Lock Deterrents, and Carp Removal
by Daniel Patrick Zielinski and Peter W. Sorensen
Fishes 2021, 6(2), 10; https://doi.org/10.3390/fishes6020010 - 26 Mar 2021
Cited by 10 | Viewed by 3962
Abstract
Invasive bigheaded carp are advancing up the Upper Mississippi River by passing through its locks-and-dams (LDs). Although these structures already impede fish passage, this role could be greatly enhanced by modifying how their spillway gates operate, adding deterrent systems to their locks, and [...] Read more.
Invasive bigheaded carp are advancing up the Upper Mississippi River by passing through its locks-and-dams (LDs). Although these structures already impede fish passage, this role could be greatly enhanced by modifying how their spillway gates operate, adding deterrent systems to their locks, and removing carp. This study examined this possibility using numeric modeling and empirical data, which evaluated all three options on an annual basis in both single LDs and pairs under different river flow conditions. Over 100 scenarios were modeled. While all three approaches showed promise, ranging from 8% to 73% reductions in how many carp pass a single LD, when employed together at pairs of LDs, upstream movement rates of invasive carp could be reduced 98–99% from current levels. Although modifying spillway gate operation is the least expensive option, its efficacy drops at high flows, so lock deterrents and/or removal using fishing/trapping are required to move towards complete blockage. Improved deterrent efficacy could also offset the need for more efficient removal. This model could help prioritize research and management actions for containing carp. Full article
(This article belongs to the Special Issue Biology and Control of Invasive Fishes)
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9 pages, 522 KiB  
Communication
Acceptance of a Protein Concentrate from Alfalfa (Medicago sativa) by Yellow Perch (Perca flavescens) Fed a Formulated Diet
by Jessica Coburn, M. Scott Wells, Nicholas B. D. Phelps, T. Gibson Gaylord and Deborah A. Samac
Fishes 2021, 6(2), 9; https://doi.org/10.3390/fishes6020009 - 25 Mar 2021
Cited by 1 | Viewed by 3045
Abstract
The majority of plant proteins used in aquatic feeds are derived from seed meals, which may contain antinutritional factors. Protein concentrates from plant foliage have received less attention in fish feeding trials. Alfalfa protein concentrate (APC) is derived from fresh alfalfa foliage that [...] Read more.
The majority of plant proteins used in aquatic feeds are derived from seed meals, which may contain antinutritional factors. Protein concentrates from plant foliage have received less attention in fish feeding trials. Alfalfa protein concentrate (APC) is derived from fresh alfalfa foliage that contains approximately 52% protein and is low in fiber. A feeding trial was done to assess growth and feed efficiency responses of yellow perch (Perca flavescens) fed a formulated diet with 180 g/kg APC replacing all fishmeal compared to a control isonitrogenous diet with fishmeal. Yellow perch accepted the APC diet but gained weight at a lower specific growth rate (−0.07% per day) and had an elevated feed conversion ratio (+0.32 g feed/g growth) than fish on the control diet containing fishmeal. There was no impact on survivorship or condition nor differences in fillet yield or composition in fish on the diet with APC compared to the control fishmeal diet. These findings indicate that although replacing fishmeal with APC in a perch diet resulted in slower growth rates, the APC was accepted and has promise as a sustainable protein in aquatic feeds. Full article
(This article belongs to the Special Issue Integration of Nutrition and Physiology in Aquatic Animals)
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9 pages, 2916 KiB  
Article
Upwelling Impact on Sardinella lemuru during the Indian Ocean Dipole in the Bali Strait, Indonesia
by Daduk Setyohadi, Umi Zakiyah, Abu Bakar Sambah and Adi Wijaya
Fishes 2021, 6(1), 8; https://doi.org/10.3390/fishes6010008 - 16 Mar 2021
Cited by 14 | Viewed by 3861
Abstract
Understanding the impact of Indian Ocean Dipole (IOD) on fishery around Indonesia is important as the fishery resources are small compared to the demand. In this study, we analyzed the effect of positive and negative phases of IOD on chlorophyll-a concentration and the [...] Read more.
Understanding the impact of Indian Ocean Dipole (IOD) on fishery around Indonesia is important as the fishery resources are small compared to the demand. In this study, we analyzed the effect of positive and negative phases of IOD on chlorophyll-a concentration and the catch of Sardinella lemuru in the Bali Strait. Data are based on field surveys in the Bali Strait during the positive and negative phase of IOD and Sea Surface Temperature (SST) and Sea Surface Chlorophyll (SSC) obtained from the analysis of satellite images. The results suggest that SSC concentration in the strait significantly correlates with the positive and negative phase of IOD, possibly through a change of upwelling and downwelling there. It is suggested that the change of phytoplankton biomass due to positive IOD would result in an increase of Sardinella lemuru in the Bali Strait. This research has direct implications as important information for the government in planning lemuru fisheries management in the Bali Strait based on oceanographic studies and climate phenomena. Full article
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11 pages, 1195 KiB  
Article
Slight Increases in Salinity Improve Muscle Quality of Grass Carp (Ctenopharyngodon idellus)
by Xi Zhang, Zhiyuan Shen, Tianpeng Qi, Rujuan Xi, Xiao Liang, Li Li, Rong Tang and Dapeng Li
Fishes 2021, 6(1), 7; https://doi.org/10.3390/fishes6010007 - 24 Feb 2021
Cited by 17 | Viewed by 3814
Abstract
Fish muscle quality is an important parameter in the aquaculture industry. In this study, we analyzed and compared the muscle quality of grass carp (Ctenopharyngodon idellus) cultured at salinities of 0‰, 3‰, and 6‰ (GC0, GC3, GC6). There was no significant [...] Read more.
Fish muscle quality is an important parameter in the aquaculture industry. In this study, we analyzed and compared the muscle quality of grass carp (Ctenopharyngodon idellus) cultured at salinities of 0‰, 3‰, and 6‰ (GC0, GC3, GC6). There was no significant difference in crude protein and crude fat content of muscle between GC0 and GC3. Crude fat was significantly lower in GC6 compared to the other groups. GC3 and GC6 had higher hydroxyproline content, which suggested that these groups had higher collagen content. GC3 and GC6 had higher contents of free amino acids and umami amino acids than GC0, but there was no significant difference in sweet or sour amino-acid content among groups. GC3 and GC6 had better texture properties, including hardness, gumminess, chewiness, resilience, and springiness, than GC0. GC3 had the highest water-holding capacity among the groups. As the salinity increased, the diameter of muscle fibers decreased and the sarcolemma showed a thickening trend. These results suggest that a slight increase in salinity (i.e., 3‰) can effectively improve the muscle quality of grass carp. Full article
(This article belongs to the Special Issue Environmental Impacts of Land-Based Aquaculture)
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17 pages, 2937 KiB  
Review
Eradication of the Invasive Common Carp, Cyprinus carpio from a Large Lake: Lessons and Insights from the Tasmanian Experience
by Jonah L. Yick, Chris Wisniewski, John Diggle and Jawahar G. Patil
Fishes 2021, 6(1), 6; https://doi.org/10.3390/fishes6010006 - 23 Feb 2021
Cited by 12 | Viewed by 6874
Abstract
Common carp (Cyprinus carpio, L. 1758) are the most abundant pest fish species in Australia, detrimental to ecosystem integrity and values, and in need of suitable management solutions. In January 1995, this destructive pest was discovered in two large, connected Tasmanian [...] Read more.
Common carp (Cyprinus carpio, L. 1758) are the most abundant pest fish species in Australia, detrimental to ecosystem integrity and values, and in need of suitable management solutions. In January 1995, this destructive pest was discovered in two large, connected Tasmanian lakes—Lakes Crescent (23 km2) and Sorell (54 km2). After an initial assessment, carp were immediately contained to these waters using screens to prevent their escape down-stream, followed by swift legislation to enforce closure of the lakes to the public. Assessment and evaluation of carp numbers occurred throughout the eradication program, with effort focused on Lake Crescent. Beginning with undirected removal, techniques progressively evolved to more sophisticated targeted removal with assistance from biotelemetry, in conjunction with gill netting and electro-fishing. Real-time population estimates and in situ observations resulted in a detailed cumulative understanding of carp population dynamics, behaviour and seasonal habitat choice. This allowed strategic deployment of fences to block access to marshes, and the installation of steel traps within the fences. These gears specifically prevented spawning opportunities, while concurrently capturing mature fish. Following 12 years of adaptive and integrated effort, 7797 carp (fry, juvenile and adult) were captured from Lake Crescent, with the last carp being caught in December 2007. The subsequent 14 years of monitoring has not resulted in the capture of any carp, confirming the successful eradication of carp from Lake Crescent. These management practices have been successfully replicated in the larger Lake Sorell, where 41,499 carp (fry, juvenile and adult) have been removed. It is now estimated that there are few, if any carp remaining. Collectively, the techniques and strategies described here were reliable, and can be applied as a model to control or eradicate pest populations of carp in freshwater lakes elsewhere. Full article
(This article belongs to the Special Issue Biology and Control of Invasive Fishes)
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26 pages, 7051 KiB  
Article
Survival, Growth, and Development in the Early Stages of the Tropical Gar Atractosteus tropicus: Developmental Critical Windows and the Influence of Temperature, Salinity, and Oxygen Availability
by Gil Martínez, Emyr Peña, Rafael Martínez, Susana Camarillo, Warren Burggren and Alfonso Álvarez
Fishes 2021, 6(1), 5; https://doi.org/10.3390/fishes6010005 - 12 Feb 2021
Cited by 7 | Viewed by 4332
Abstract
Alterations in fish developmental trajectories occur in response to genetic and environmental changes, especially during sensitive periods of development (critical windows). Embryos and larvae of Atractosteus tropicus were used as a model to study fish survival, growth, and development as a function of [...] Read more.
Alterations in fish developmental trajectories occur in response to genetic and environmental changes, especially during sensitive periods of development (critical windows). Embryos and larvae of Atractosteus tropicus were used as a model to study fish survival, growth, and development as a function of temperature (28 °C control, 33 °C, and 36 °C), salinity (0.0 ppt control, 4.0 ppt, and 6.0 ppt), and air saturation (control ~95% air saturation, hypoxia ~30% air saturation, and hyperoxia ~117% air saturation) during three developmental periods: (1) fertilization to hatch, (2) day 1 to day 6 post hatch (dph), and (3) 7 to 12 dph. Elevated temperature, hypoxia, and hyperoxia decreased survival during incubation, and salinity at 2 and 3 dph. Growth increased in embryos incubated at elevated temperature, at higher salinity, and in hyperoxia but decreased in hypoxia. Changes in development occurred as alterations in the timing of hatching, yolk depletion, acceptance of exogenous feeding, free swimming, and snout shape change, especially at high temperature and hypoxia. Our results suggest identifiable critical windows of development in the early ontogeny of A. tropicus and contribute to the knowledge of fish larval ecology and the interactions of individuals × stressors × time of exposure. Full article
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14 pages, 1074 KiB  
Article
Evaluating Coexistence of Fish Species with Coastal Cutthroat Trout in Low Order Streams of Western Oregon and Washington, USA
by Kyle D. Martens and Jason Dunham
Fishes 2021, 6(1), 4; https://doi.org/10.3390/fishes6010004 - 30 Jan 2021
Cited by 5 | Viewed by 4191
Abstract
When multiple species of fish coexist there are a host of potential ways through which they may interact, yet there is often a strong focus on studies of single species without considering these interactions. For example, many studies of forestry–stream interactions in the [...] Read more.
When multiple species of fish coexist there are a host of potential ways through which they may interact, yet there is often a strong focus on studies of single species without considering these interactions. For example, many studies of forestry–stream interactions in the Pacific Northwest have focused solely on the most prevalent species: Coastal cutthroat trout. To examine the potential for interactions of other fishes with coastal cutthroat trout, we conducted an analysis of 281 sites in low order streams located on Washington’s Olympic Peninsula and along the central Oregon coast. Coastal cutthroat trout and juvenile coho salmon were the most commonly found salmonid species within these streams and exhibited positive associations with each other for both presence and density. Steelhead were negatively associated with the presence of coastal cutthroat trout as well as with coho salmon and sculpins (Cottidae). Coastal cutthroat trout most frequently shared streams with juvenile coho salmon. For densities of these co-occurring species, associations between these two species were relatively weak compared to the strong influences of physical stream conditions (size and gradient), suggesting that physical conditions may have more of an influence on density than species interactions. Collectively, our analysis, along with a review of findings from prior field and laboratory studies, suggests that the net effect of interactions between coastal cutthroat trout and coho salmon do not appear to inhibit their presence or densities in small streams along the Pacific Northwest. Full article
(This article belongs to the Special Issue Integration of Nutrition and Physiology in Aquatic Animals)
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15 pages, 1714 KiB  
Review
Achieving Sea Lamprey Control in Lake Champlain
by Bradley Young, BJ Allaire and Stephen Smith
Fishes 2021, 6(1), 2; https://doi.org/10.3390/fishes6010002 - 26 Jan 2021
Cited by 4 | Viewed by 3859
Abstract
The control of parasitic sea lamprey in Lake Champlain has been a necessary component of its fishery restoration and recovery goals for 30 years. While adopting the approach of the larger and established sea lamprey control program of the Laurentian Great Lakes, local [...] Read more.
The control of parasitic sea lamprey in Lake Champlain has been a necessary component of its fishery restoration and recovery goals for 30 years. While adopting the approach of the larger and established sea lamprey control program of the Laurentian Great Lakes, local differences emerged that shifted management focus and effort as the program evolved. Increased investment in lamprey assessment and monitoring revealed under-estimations of population density and distribution in the basin, where insufficient control efforts went unnoticed. As control efforts improved in response to a better understanding of the population, the effects of lamprey on the fishery lessened. A long-term evaluation of fishery responses when lamprey control was started, interrupted, delayed, and enhanced provided evidence of a recurring relationship between the level of control effort applied and the measured suppression of the parasitic sea lamprey population. Changes in levels of control efforts over time showed repeatedly that measurable suppression of the parasitic population required effective control of 80% of the known larval population. Understanding the importance of assessment and monitoring and the relationship between control effort and population suppression has led to recognition that a comprehensive, not incremental, approach is needed to achieve effective control of sea lamprey in Lake Champlain. Full article
(This article belongs to the Special Issue Biology and Control of Invasive Fishes)
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18 pages, 1663 KiB  
Review
Trends in Growth Modeling in Fisheries Science
by Shane A. Flinn and Stephen R. Midway
Fishes 2021, 6(1), 1; https://doi.org/10.3390/fishes6010001 - 19 Jan 2021
Cited by 27 | Viewed by 8713
Abstract
Growth models estimate life history parameters (e.g., growth rates and asymptotic size) that are used in the management of fisheries stocks. Traditionally in fisheries science, it was common to fit one growth model—the von Bertalanffy growth model—to size-at-age data. However, in recent years, [...] Read more.
Growth models estimate life history parameters (e.g., growth rates and asymptotic size) that are used in the management of fisheries stocks. Traditionally in fisheries science, it was common to fit one growth model—the von Bertalanffy growth model—to size-at-age data. However, in recent years, fisheries science has seen an increase in the number of growth models available and the evaluation of multiple growth models for a given species or study. We reviewed n = 196 peer-reviewed age and growth studies and n = 50 NOAA (National Oceanic and Atmospheric Administration) regional stock assessments to examine trends in the use of growth models and model selection in fisheries over time. Our results indicate that the total number of age and growth studies increased annually since 1988 with a slight proportional increase in the use of multi-model frameworks. Information theoretic approaches are replacing goodness-of-fit and a priori model selection in fisheries studies; however, this trend is not reflected in NOAA stock assessments, which almost exclusively rely on the von Bertalanffy growth model. Covariates such as system (e.g., marine or fresh), location of study, diet, family, maximum age, and range of age data used in model fitting did not contribute to which model was ultimately the best fitting, suggesting that there are no large-scale patterns of specific growth models being applied to species with common life histories or other attributes. Given the importance and ubiquity of growth modeling to fisheries science, a historical and contemporary understanding of the practice is critical to evaluate improvements that have been made and future challenges. Full article
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10 pages, 1061 KiB  
Article
Vertebrae Morphometric Measurement and Ca/P Levels of Different Age European Seabass (Dicentrarchus labrax)
by Vasiliki Nikiforidou, Stefanos Zaoutsos, Nikolaos Vlahos and Panagiotis Berillis
Fishes 2020, 5(4), 37; https://doi.org/10.3390/fishes5040037 - 8 Dec 2020
Cited by 4 | Viewed by 8433
Abstract
The European seabass is one of the most important species of the Mediterranean, specifically Greece. Individuals with different numbers of vertebrae have been reported. This number ranges from 24 to 26 vertebrae. In this study a sample of 73 individual seabass were collected [...] Read more.
The European seabass is one of the most important species of the Mediterranean, specifically Greece. Individuals with different numbers of vertebrae have been reported. This number ranges from 24 to 26 vertebrae. In this study a sample of 73 individual seabass were collected from fish farms and divided into three age groups. The first group included fingerling individuals, the second group, juvenile individuals and the third group, adult individuals. The number and the length of their vertebrae were measured by radiographs. The individuals were divided into subgroups according to their vertebrae number, and from each one the tenth vertebra was taken. Ca and P levels (%) of each tenth vertebra were measured by X-ray spectroscopy (EDS), and the Ca/P ratio was determined. Vertebrae length, Ca and P levels and Ca/P ratio were compared among age groups and among individuals with different numbers of vertebrae. It was shown that the European seabass’s vertebral column can be divided to three sections—cervical, abdominal and caudal—following the striped bass (Morone saxatilis) model. Full article
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23 pages, 3798 KiB  
Article
Case Studies Demonstrate That Common Carp Can Be Sustainably Reduced by Exploiting Source-Sink Dynamics in Midwestern Lakes
by Peter W. Sorensen and Przemyslaw G. Bajer
Fishes 2020, 5(4), 36; https://doi.org/10.3390/fishes5040036 - 4 Dec 2020
Cited by 14 | Viewed by 4145
Abstract
The common carp has been highly problematic in North American ecosystems since its introduction over a century ago. In many watersheds, its abundance appears to be driven by source-sink dynamics in which carp reproduce successfully in peripheral ponds that lack egg/larva micro-predators which [...] Read more.
The common carp has been highly problematic in North American ecosystems since its introduction over a century ago. In many watersheds, its abundance appears to be driven by source-sink dynamics in which carp reproduce successfully in peripheral ponds that lack egg/larva micro-predators which then serve as sources of recruits for deeper lakes. This manuscript describes how carp were sustainably reduced in two chains of lakes by disrupting source-sink dynamics in three steps. First, we ascertained whether lakes had problematic densities of carp that could be explained by source-sink dynamics. Second, ways to control recruitment were developed and implemented including: (i) aerating source ponds to reduce hypoxia and increase micro-predator abundance, (ii) blocking carp migration, and (iii) locating and removing adults from sinks using targeted netting guided by Judas fish. Third, we monitored and adapted. Using this strategy, the density of carp in 3 lakes in one chain was reduced from 177 kg/ha to ~100 kg/ha in 3 years and held constant for a decade. Similarly, adult density was reduced from 300 kg carp/ha in 2 lakes in the other chain to 25 kg/ha. Once carp densities were low, aluminum sulfate treatments became reasonable and once conducted, water quality improved. Full article
(This article belongs to the Special Issue Biology and Control of Invasive Fishes)
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12 pages, 1273 KiB  
Article
Multispecies Fresh Water Algae Production for Fish Farming Using Rabbit Manure
by Adandé Richard, Liady Mouhamadou Nourou Dine, Djidohokpin Gildas, Adjahouinou Dogbè Clément, Azon Mahuan Tobias Césaire, Micha Jean-Claude and Fiogbe Didier Emile
Fishes 2020, 5(4), 35; https://doi.org/10.3390/fishes5040035 - 30 Nov 2020
Viewed by 3204
Abstract
The current study aims at determining the optimal usage conditions of rabbit manure in a multispecies fresh water algae production for fish farming. This purpose, the experimental design is made of six treatments in triplicate including one control T0, T1 [...] Read more.
The current study aims at determining the optimal usage conditions of rabbit manure in a multispecies fresh water algae production for fish farming. This purpose, the experimental design is made of six treatments in triplicate including one control T0, T1, T2, T3, T4, T5 corresponding respectively to 0, 300, 600, 900, 1200, 1500 g/m3 of dry rabbit manure put into buckets containing 40 L of demineralized water and then fertilized. The initial average seeding density is made of 4 × 103 ± 2.5 × 102 cells/L of Chlorophyceae, 1.5 × 103 ± 1 × 102 cells/L of Coscinodiscophyceae, 3 × 103 ± 1.2 × 102 cells/L of Conjugatophyceae, 2.8 × 103 ± 1.5 × 102 cells/L of Bascillariophyceae, and 2.5 × 103 ± 1.4 × 102 cells/L of Euglenophyceae. During the experiments, the effects of these treatments on abiotic and biotic parameters (chlorophyll-a concentration, phytoplankton density and algal density) of different production media were monitored. Results show that average density of different phytoplankton classes is higher in treatment T5 (7.91 × 108 ± 6.78 × 107 cells/L) followed by T4 (5.56 × 108 ± 4.27 × 107 cells/L), T2 (3.87 × 108 ± 3.10 × 108 cells/L), T3 (3.79 × 108 ± 3.18 × 108 cells/L, with high significant difference (F (4,84) = 5, 35, p < 0.00). Chl-a concentration varied from 0.07 ± 0.05 mg/L (T0) to 14.47 ± 12.50 mg/L (T5) with high significant differences observed among treatments (F (5,83) = 3,09, p = 0,01). In addition, fourteen (14) species belonging to eight (8) families, five (5) classes and three (3) phyla were identified in our different production media. During the culture, Chlorophyceae class was the most represented in all treatments with 5 species (36% of the specific diversity) while Euglenophyceae class (7%) was the least represented with only one (01) species. According to these results, treatments T2 (600 g/m3), T3 (900 g/m3) and T4 (1200 g/m3) of dry rabbit manure are those worthy to be recommended as an alternative for a low cost massive production of multispecies freshwater algae that can be easily used by freshwater zooplankton and macroinvertebrates. Indeed, despite the best performances that it shows, treatment T5, presents important eutrophication’s risks. Full article
(This article belongs to the Special Issue Environmental Impacts of Land-Based Aquaculture)
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15 pages, 51861 KiB  
Article
Morphology, Transcriptomics and In Vitro Model of Skin from Polar Cod (Boreogadus Saida) and Atlantic Cod (Gadus Morhua)
by Elisabeth Ytteborg, Øyvind Johannes Hansen, Vibeke Høst, Sergey Afanasyev, Ireen Vieweg, Jasmine Nahrgang and Aleksei Krasnov
Fishes 2020, 5(4), 34; https://doi.org/10.3390/fishes5040034 - 4 Nov 2020
Cited by 9 | Viewed by 4407
Abstract
Fish skin is a multifunctional barrier tissue with high regeneration capacity that interacts with the surrounding environment and provides protection. Functional importance, high complexity and activity make skin an attractive tissue for studying the effects of environmental challenges and chemical stressors in fish. [...] Read more.
Fish skin is a multifunctional barrier tissue with high regeneration capacity that interacts with the surrounding environment and provides protection. Functional importance, high complexity and activity make skin an attractive tissue for studying the effects of environmental challenges and chemical stressors in fish. The aim of this work was to characterize skin from polar cod (Boreogadus saida) and Atlantic cod (Gadus morhua), and to test cod skin as an in vitro model in exposure studies. Both species have similar skin structures including epidermis, mucous cells, club cells and scales. However, microarchitectural differences were detected; Atlantic cod has a smooth epidermal surface and overlapping scales, whereas polar cod has a folded outer surface and discontinuous scales. Genome-wide microarray found 6.5k genes with expression differences, which suggested more active turnover of proteins, proliferation and motility of cells in skin of polar cod. Hydrogen peroxide (H2O2) was used to examine skin responses. Transcriptome response was stronger in the skin of polar cod, with 155 differentially expressed genes. The skin from Atlantic cod was further used to develop a cell culture. H2O2 decreased the cell migration rate in a dose-dependent manner, which could indicate reduced skin healing capacity. The results revealed novel skin structures and confirmed that the skin from cod is a promising tissue for evaluation of stressors. Full article
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18 pages, 1679 KiB  
Article
Competition between Invasive Ruffe (Gymnocephalus cernua) and Native Yellow Perch (Perca flavescens) in Experimental Mesocosms
by Raymond M. Newman, Fred G. Henson and Carl Richards
Fishes 2020, 5(4), 33; https://doi.org/10.3390/fishes5040033 - 17 Oct 2020
Cited by 4 | Viewed by 3383
Abstract
Ruffe (Gymnocephalus cernua) were introduced to North America from Europe in the mid-1980s and based on similar diets and habit use may compete with yellow perch (Perca flavescens). To examine competitive interactions between invasive ruffe and native yellow perch, [...] Read more.
Ruffe (Gymnocephalus cernua) were introduced to North America from Europe in the mid-1980s and based on similar diets and habit use may compete with yellow perch (Perca flavescens). To examine competitive interactions between invasive ruffe and native yellow perch, individually marked perch and ruffe were placed in mesocosms in a small lake. Mesocosms allowed fish to interact and feed on the natural prey populations enclosed. In the first experiment, four treatments were assessed: 28 perch, 14 perch + 14 ruffe, 14 perch, and 7 perch + 7 ruffe. Yellow perch growth was significantly lower in the presence of ruffe (ANOVA, p = 0.005) than in treatments containing only perch. In a second experiment, an increasing density of one species was superimposed upon a constant density of the other in parallel treatment series. Growth rates of both ruffe and perch declined when ruffe density was increased (t test, p = 0.006). However, neither ruffe nor perch growth was affected by increasing perch density. Total stomach content mass of perch was significantly decreased by ruffe in both years (p < 0.02), but no effects of ruffe on the composition of perch diets were observed. Ruffe growth and food consumption was greater than that of perch for both experiments. Ruffe can outcompete yellow perch when both species depend on a limited benthic food resource. Thus there is reason for concern for the ecological effects of ruffe if they expand their range into Lake Erie or North American inland lakes that contain yellow perch. Full article
(This article belongs to the Special Issue Biology and Control of Invasive Fishes)
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11 pages, 284 KiB  
Article
Digestibility of Local Feed Ingredients in Tilapia Oreochromis niloticus Juveniles, Determined on Faeces Collected by Siphoning or Stripping
by Francis Pius Mmanda, Jan Erik Lindberg, Anna Norman Haldén, Matern S. P. Mtolera, Rukia Kitula and Torbjörn Lundh
Fishes 2020, 5(4), 32; https://doi.org/10.3390/fishes5040032 - 15 Oct 2020
Cited by 11 | Viewed by 6192
Abstract
Eight locally available protein source ingredients in Tanzania were selected for assessment of apparent digestibility (AD) in tilapia Oreochromis niloticus, using faeces samples collected by siphoning or stripping. The selected protein source ingredients were Lake Victoria sardines (FM), brewers spent yeast (BSY), [...] Read more.
Eight locally available protein source ingredients in Tanzania were selected for assessment of apparent digestibility (AD) in tilapia Oreochromis niloticus, using faeces samples collected by siphoning or stripping. The selected protein source ingredients were Lake Victoria sardines (FM), brewers spent yeast (BSY), moringa leaves (ML), freshwater shrimp (FSH), marine shrimp (MSH), cattle blood (CB), duckweed (DW) and fish frames (FF). The AD (%) of dry matter (DM), organic matter (OM) and crude protein (CP) was unaffected (p > 0.782–0.901) by the faeces collection method (i.e., siphoning or stripping), with correlation coefficient (r) of 0.98, 0.99 and 0.93 between AD values for DM, OM and CP, respectively, following siphoning and stripping. The AD (%) of DM, OM, CP and gross energy (GE) in the test ingredients differed (p < 0.0001). The AD (%) of DM and OM was lowest in BSY and DW, followed in increasing order by ML, MSH, FF, FSH and CB. In general, the AD (%) of CP was high (>76%), but with a low value (46%) for DW. The AD (%) of GE was closely correlated (r = 0.96) with the AD of OM. In conclusion, FSH, MSH, CB, FF, BSY and ML have acceptable protein digestibility to be used in tilapia diet formulation. Full article
13 pages, 2853 KiB  
Article
Determining Stingray Movement Patterns in a Wave-Swept Coastal Zone Using a Blimp for Continuous Aerial Video Surveillance
by David Ruiz-García, Kye Adams, Heidi Brown and Andrew R. Davis
Fishes 2020, 5(4), 31; https://doi.org/10.3390/fishes5040031 - 30 Sep 2020
Cited by 7 | Viewed by 5187
Abstract
Stingrays play a key role in the regulation of nearshore ecosystems. However, their movement ecology in high-energy surf areas remains largely unknown due to the notorious difficulties in conducting research in these environments. Using a blimp as an aerial platform for video surveillance, [...] Read more.
Stingrays play a key role in the regulation of nearshore ecosystems. However, their movement ecology in high-energy surf areas remains largely unknown due to the notorious difficulties in conducting research in these environments. Using a blimp as an aerial platform for video surveillance, we overcame some of the limitations of other tracking methods, such as the use of tags and drones. This novel technology offered near-continuous coverage to characterise the fine-scale movements of stingrays in a surf area in Kiama, Australia, without any invasive procedures. A total of 98 stingray tracks were recorded, providing 6 h 27 min of movement paths. The tracking data suggest that stingrays may use a depth gradient located in the sandflat area of the bay for orientating their movements and transiting between locations within their home range. Our research also indicates that stingray behaviour was influenced by diel periods and tidal states. We observed a higher stingray occurrence during the afternoon, potentially related to foraging and anti-predatory strategies. We also saw a reduced route fidelity during low tide, when the bathymetric reference was less accessible due to stranding risk. Considering the increasing threat of anthropogenic development to nearshore coastal environments, the identification of these patterns can better inform the management and mitigation of threats. Full article
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18 pages, 2770 KiB  
Article
An Ecological and Economical Assessment of Integrated Amaranth (Amaranthus hybridus) and Nile Tilapia (Oreochromis niloticus) Farming in Dar es Salaam, Tanzania
by Deogratias Pius Mulokozi, Håkan Berg and Torbjörn Lundh
Fishes 2020, 5(3), 30; https://doi.org/10.3390/fishes5030030 - 18 Sep 2020
Cited by 4 | Viewed by 4322
Abstract
Organic wastes can be recycled in an ecologically sound way in fishponds by applying integrated agriculture and aquaculture systems (IAA). This kind of waste recycling can help to protect the environment from pollution and improve fishpond yields. Additionally, IAA provides an opportunity for [...] Read more.
Organic wastes can be recycled in an ecologically sound way in fishponds by applying integrated agriculture and aquaculture systems (IAA). This kind of waste recycling can help to protect the environment from pollution and improve fishpond yields. Additionally, IAA provides an opportunity for diversification of the output from two or more existing subsystems leading to higher overall farm economic returns. This study explored the potential application of amaranth wastes (AW) as a dietary ingredient for tilapia in a tilapia-amaranths integrated system (ITA). An experimental diet (AD) contained 10% (based on the control diet, CD) inclusion of AW collected from a nearby vegetable market. The experiments included triplicate treatments with; (i) fish fed on AD, where the pond water was used for irrigating the amaranth plants (IAA-fish), and (ii) fish fed on CD, where no pond water was used for irrigating the amaranth plants (non-IAA fish). 90 days after fish stocking, eighteen 4 m2 amaranth plots were prepared and treated with (i) tap water without fertilization (control amaranths), (ii) water from IAA-fish pond and organically fertilized (IAA amaranths), and (iii) tap water and inorganically fertilized (non-IAA amaranths). The use of AW improved the fish feed conversion ratio. The overall net income from ITA was 3.2, 2.3, 2.6, and 1.8 higher than from non-IAA amaranths, IAA-amaranths, non-IAA fish, and IAA fish sub-systems respectively. Full article
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14 pages, 1740 KiB  
Article
Geographic-Scale Harvest Program to Promote Invasivorism of Bigheaded Carps
by Wesley W. Bouska, David C. Glover, Jesse T. Trushenski, Silvia Secchi, James E. Garvey, Ruairi MacNamara, David P. Coulter, Alison A. Coulter, Kevin Irons and Andrew Wieland
Fishes 2020, 5(3), 29; https://doi.org/10.3390/fishes5030029 - 1 Sep 2020
Cited by 11 | Viewed by 4455
Abstract
Invasive bigheaded carps, genus Hypophthalmichthys, are spreading throughout the Mississippi River basin. To explore the efficacy of a consumer-based market (i.e., invasivorism) to manage them, we developed a conceptual model and evaluated three harvest approaches—direct contracted removal, volume-based incentives (“fisher-side” control), and [...] Read more.
Invasive bigheaded carps, genus Hypophthalmichthys, are spreading throughout the Mississippi River basin. To explore the efficacy of a consumer-based market (i.e., invasivorism) to manage them, we developed a conceptual model and evaluated three harvest approaches—direct contracted removal, volume-based incentives (“fisher-side” control), and set-quota harvest (“market-side” control). We quantified the efficacy of these approaches and potential population impact in the Illinois River. Contracted removal was effective for suppressing small populations at the edge of the range but cannot support a market. “Fisher-side” removals totaled 225,372 kg in one year. However, participation was low, perhaps due to reporting requirements for fishers. The “market-side”, set-quota approach removed >1.3 million kg of bigheaded carp in less than 6 months. Larger, older fish were disproportionately harvested, which may hinder the ability to suppress population growth. Total density declined in one river reach, and harvest may reduce upstream movement toward the invasion fronts. With sufficient market demand, harvest may control bigheaded carp. However, lack of processing infrastructure and supply chain bottlenecks could constrain harvest, particularly at low commodity prices. Given the geographical scale of this invasion and complicated harvest logistics, concerns about economic dependence on invasivorism that encourage stock enhancement are likely unmerited. Full article
(This article belongs to the Special Issue Biology and Control of Invasive Fishes)
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