Special Issue "Viral Genomics and Bioinformatics"
A special issue of Viruses (ISSN 1999-4915).
Deadline for manuscript submissions: closed (30 June 2010)
Dr. Donald Seto
Bioinformatics and Computational Biology, 10900 University Blvd., MSN 5B3, Occoquan Bldg, Rm 325, George Mason University, Manassas, VA 20110, USA
Phone: +1 703 993 8403
Interests: genomics and bioinformatics of adenovirus; molecular evolution; coinfections; emergent viral pathogens; comparative genomics; bioinformatic tools development; diagnostics and surveillance
The applications of ‘state-of-the-art’ genomics and bioinformatics to viruses are very important in many regards. Viruses are human pathogens and present a tremendous burden in morbidity and mortality. Modern genomics allowed a rapid identification of a coronavirus as the causal agent of the SARS outbreak. This is but one example of the benefits of the viral genomics revolution.
As model organisms, viruses have served to increase our understanding across many fields of the life sciences, including medicine, biochemistry, genetics, cell biology, molecular biology, applied biology, biotechnology, etc. They have proven useful demonstrations of novel technical and methodological applications. And their relatively small genomes contain fascinating and often paradigm changing biological information. Viral genomics and bioinformatics have grown with high throughput DNA sequencing technology, and these are being applied to larger, multiple and more complex genomes recently.
The first DNA genome to be sequenced, at 5,375 bases, was phi-X 174 by Sanger et al., performed in 1977 as a demonstration of the utility of DNA sequencing. At the other side of the spectrum was the genome determination of Mimivirus at 1.2 Mb by Raoult et al., in 2004. In between, novel pathogens such as the SARS coronavirus have been identified rapidly based in part by their genome sequence. The pathoepidemiology and natural history of viruses can be followed by genomics and bioinformatics – HIV is a prominent example. High-throughput genome sequencing allows massive numbers of viral genomes to be sequenced, and outbreaks to be followed in great detail. The same methodology and technology are being used to understand more completely the bacteriophages, as well as plant viruses.
As improved high throughput technology is available and more bioinformatic tools are developed, application of these methodologies to viruses will solve some of the outstanding biological questions of current times, and will allow new strategies to prevent outbreaks and to alleviate the burden of viral infections on global public health.
Dr. Donald Seto
- high-throughput sequencing
- infectious disease monitoring
- pathogen evolution and natural history
- animal viruses
- plant viruses
- insect viruses
Review: The Revolution in Viral Genomics as Exemplified by the Bioinformatic Analysis of Human Adenoviruses
Viruses 2010, 2(7), 1367-1381; doi:10.3390/v2071367
Received: 27 May 2010 / Accepted: 24 June 2010 / Published: 28 June 2010| Download PDF Full-text (679 KB) | Download XML Full-text
Viruses 2010, 2(7), 1458-1475; doi:10.3390/v2071458
Received: 8 June 2010; in revised form: 12 July 2010 / Accepted: 13 July 2010 / Published: 15 July 2010| Download PDF Full-text (1244 KB) | Download XML Full-text |
Viruses 2010, 2(8), 1804-1820; doi:10.3390/v2081803
Received: 1 July 2010 / Accepted: 12 August 2010 / Published: 24 August 2010| Download PDF Full-text (300 KB)
Viruses 2010, 2(9), 1867-1885; doi:10.3390/v2091867
Received: 16 June 2010; in revised form: 5 August 2010 / Accepted: 18 August 2010 / Published: 31 August 2010| Download PDF Full-text (1064 KB)
Viruses 2010, 2(9), 1933-1967; doi:10.3390/v2091933
Received: 14 July 2010; in revised form: 25 August 2010 / Accepted: 1 September 2010 / Published: 15 September 2010| Download PDF Full-text (1902 KB) |
Viruses 2010, 2(10), 2258-2268; doi:10.3390/v2102258
Received: 26 August 2010; in revised form: 18 September 2010 / Accepted: 20 September 2010 / Published: 13 October 2010| Download PDF Full-text (84 KB)
Editorial: Viral Genomics and Bioinformatics
Viruses 2010, 2(12), 2587-2593; doi:10.3390/v2122587
Received: 29 November 2010 / Accepted: 29 November 2010 / Published: 30 November 2010| Download PDF Full-text (41 KB)
Last update: 27 December 2012