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Viruses 2010, 2(9), 1867-1885; doi:10.3390/v2091867
Article

JaPaFi: A Novel Program for the Identification of Highly Conserved DNA Sequences

1
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2
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1
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1
 and
1,*
1 Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC, V8W 3P6, Canada 2 Department of Computer Science, University of Victoria, Victoria, BC, V8W 3P6, Canada
* Author to whom correspondence should be addressed.
Received: 16 June 2010 / Revised: 5 August 2010 / Accepted: 18 August 2010 / Published: 31 August 2010
(This article belongs to the Special Issue Viral Genomics and Bioinformatics)
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Abstract

We describe the use of Java Pattern Finder (JaPaFi) to identify short (
Keywords: Poxvirus; bioinformatics; highly conserved sequences; approximate match; conserved function; JaPaFi Poxvirus; bioinformatics; highly conserved sequences; approximate match; conserved function; JaPaFi
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Sadeque, A.; Barsky, M.; Marass, F.; Kruczkiewicz, P.; Upton, C. JaPaFi: A Novel Program for the Identification of Highly Conserved DNA Sequences. Viruses 2010, 2, 1867-1885.

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