Special Issue "Modern Phylogeny: The Three Domains of Life"
Deadline for manuscript submissions: closed (31 July 2014)
Dr. Kathleen Scott (Website)
Department of Biology, University of South Florida, 4202 E. Fowler Avenue, SCA 110, Tampa, Florida 33620, USA
Interests: physiological ecology of chemolithoautotrophs; marine and freshwater biogeochemistry
Many physiological capabilities (e.g., glycolysis; phototrophy via bacteriorhodopsin) are shared among more than one of the three great domains of life, either due to inferred presence in a common ancestor, or horizontal gene transfer subsequent to domain differentiation. However, many major capabilities (eg., photosynthesis; methanogenesis; the Calvin cycle) are limited to one domain, or perhaps one phylum, and seem recalcitrant to broader distribution on the tree of life. The purpose of this issue is to provide a venue for adventuresome, yet well-reasoned, speculation about the forces driving and limiting the distribution key physiological capabilities on the tree of life. Are certain lifestyle/phylogenies inherently incompatible (methanogenic bacteria? Photosynthetic or pathogenic archaea?)? Or, is it likely that these organisms exist, but have not been detected yet? Where might we find them, if they do exist? Minireview/perspective format is welcomed.
Dr. Kathleen Scott
Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. Papers will be published continuously (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.
Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are refereed through a peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Life is an international peer-reviewed Open Access quarterly journal published by MDPI.
Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 600 CHF (Swiss Francs). English correction and/or formatting fees of 250 CHF (Swiss Francs) will be charged in certain cases for those articles accepted for publication that require extensive additional formatting and/or English corrections.
The below list represents only planned manuscripts. Some of these manuscripts have not been received by the Editorial Office yet. Papers submitted to MDPI journals are subject to peer-review.
Title: Trees beyond the Tree
Author: Guillaume Lecointre
Affiliation: UMR 7138 « Systématique, Adaptation, Evolution », Département Systématique & Evolution, Muséum National d’Histoire Naturelle, CP 39, 57 rue Cuvier, 75005 PARIS, France; E-Mail: firstname.lastname@example.org
Abstract: The term "tree" is commonly used for objects very different in terms of epistemology. We will list several categories of « trees » according to various meanings given to nodes and to links. We will do the same for the « tree of life » (TOL). The distinctions made are useful to clarify assumptions required by certains tools of tree reconstruction. We will show that nine kinds of « trees » are distributed across four levels: the theoretical level, the technical level, the epistemological level, and the synthetic level. Avoiding confusions, it appears that networks are not obligarory representations of the TOL.