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The Role of MicroRNAs, tRNA Fragments, and Circular RNAs in Leukemia

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Pathology, Diagnostics, and Therapeutics".

Deadline for manuscript submissions: closed (31 July 2022) | Viewed by 12755

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Department of Biochemistry and Molecular Biology, Faculty of Biology, National and Kapodistrian University of Athens, Athens, Greece
Interests: tRNA derivatives; circular RNAs; regulation of gene expression; molecular biomarkers; BCL2 family; kallikreins; chronic lymphocytic leukemia; multiple myeloma; non-Hodgkin lymphoma

Special Issue Information

Dear Colleagues,

Leukemias constitute a group of hematological malignancies, usually arising from the bone marrow and characterized by very high abundance of abnormal blood cells. Until today, the exact causes of leukemia remain unknown, while a combination of genetic and environmental factors are believed to contribute to leukemia development. Therefore, elucidation of the molecular background of leukemia as well as its clinical aspects, such as effective diagnosis, prognosis, and treatment, constitutes a great challenge in the personalized medicine era.

MicroRNAs (miRNAs) are single-stranded, small non-coding RNA molecules that epigenetically regulate gene expression, mostly through binding to the 3′ untranslated region (3′ UTR) of targeted messenger RNA (mRNA) molecules and, hence, mediating translational repression, usually combined with or followed by mRNA degradation. miRNAs can function either as oncogenes or tumor suppressors by controlling the activity and function of key signaling pathways and cellular processes such as cell proliferation, apoptosis, cell differentiation, and response to hypoxia. From a clinical perspective, particular miRNAs can also serve as molecular biomarkers and therapeutic targets for hematological malignancies, including leukemia.

Transfer RNA (tRNA)-derived RNA fragments are small non-coding RNAs specifically cleaved from transfer RNA (tRNAs), with a length of 14–48 nucleotides. They are classified into three main classes, namely tRNA fragments (tRFs), stress-induced tRNA-derived RNA fragments (tiRNAs), and toxic small tRNA-derived RNA fragments (tsRNAs). The tRNA molecules present a high differentiation in their cleavage sites, thus leading to several tRNA-derived RNA fragments varying in length and having distinct functions. They participate in translation regulation and gene silencing, with a subsequent effect on cell viability and proliferation. Furthermore, they play a pivotal role in stress-induced situations.

Circular RNAs (circRNAs) are a neglected RNA type deriving from back-splicing. The high-throughput analysis revolution uncovered their widespread expression, arousing scientific interest. circRNAs have been designated as crucial modulators in several aspects of cell life, both in physiological and pathological states. Circular RNAs can affect post-transcriptional gene regulation mediated by miRNAs by acting as miRNA sponges. As studies regarding the intricate functions of circRNAs emerged, their association with multiple regulatory networks became evident, proving that these molecules play key roles in leukemia and may have wide clinical applications.

This Special Issue focuses on the information of the readers regarding the potential of miRNAs, tRNA-derived RNA fragments, and circRNAs to regulate protein-coding gene expression at a post-transcriptional level, in leukemia and other hematological malignancies. Authors are encouraged to submit their original research studies concerning this topic. Review articles will also be taken into consideration. We hope that this Special Issue regarding the identity, biological role, and/or clinical utility of miRNAs, tRNA fragments, and circRNAs in leukemia will pique the interest of the readers of this journal.

Dr. Christos K. Kontos
Dr. Paraskevi Karousi
Guest Editors

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Keywords

  • miRNAs
  • tRFs
  • tiRNAs
  • circRNAs
  • regulators
  • acute lymphoblastic leukemia
  • chronic lymphocytic leukemia
  • acute myelogenous leukemia
  • chronic myelogenous leukemia
  • molecular biomarkers

Published Papers (2 papers)

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Review

23 pages, 1602 KiB  
Review
Genetic Biomarkers in Chronic Myeloid Leukemia: What Have We Learned So Far?
by Bilal Abdulmawjood, Beatriz Costa, Catarina Roma-Rodrigues, Pedro V. Baptista and Alexandra R. Fernandes
Int. J. Mol. Sci. 2021, 22(22), 12516; https://doi.org/10.3390/ijms222212516 - 19 Nov 2021
Cited by 17 | Viewed by 6675
Abstract
Chronic Myeloid Leukemia (CML) is a rare malignant proliferative disease of the hematopoietic system, whose molecular hallmark is the Philadelphia chromosome (Ph). The Ph chromosome originates an aberrant fusion gene with abnormal kinase activity, leading to the buildup of reactive oxygen species and [...] Read more.
Chronic Myeloid Leukemia (CML) is a rare malignant proliferative disease of the hematopoietic system, whose molecular hallmark is the Philadelphia chromosome (Ph). The Ph chromosome originates an aberrant fusion gene with abnormal kinase activity, leading to the buildup of reactive oxygen species and genetic instability of relevance in disease progression. Several genetic abnormalities have been correlated with CML in the blast phase, including chromosomal aberrations and common altered genes. Some of these genes are involved in the regulation of cell apoptosis and proliferation, such as the epidermal growth factor receptor (EGFR), tumor protein p53 (TP53), or Schmidt-Ruppin A-2 proto-oncogene (SRC); cell adhesion, e.g., catenin beta 1 (CTNNB1); or genes associated to TGF-β, such as SKI like proto-oncogene (SKIL), transforming growth factor beta 1 (TGFB1) or transforming growth factor beta 2 (TGFB2); and TNF-α pathways, such as Tumor necrosis factor (TNFA) or Nuclear factor kappa B subunit 1 (NFKB1). The involvement of miRNAs in CML is also gaining momentum, where dysregulation of some critical miRNAs, such as miRNA-451 and miRNA-21, which have been associated to the molecular modulation of pathogenesis, progression of disease states, and response to therapeutics. In this review, the most relevant genomic alterations found in CML will be addressed. Full article
(This article belongs to the Special Issue The Role of MicroRNAs, tRNA Fragments, and Circular RNAs in Leukemia)
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22 pages, 1117 KiB  
Review
Dysregulation of miRNA in Leukemia: Exploiting miRNA Expression Profiles as Biomarkers
by Luisa Anelli, Antonella Zagaria, Giorgina Specchia, Pellegrino Musto and Francesco Albano
Int. J. Mol. Sci. 2021, 22(13), 7156; https://doi.org/10.3390/ijms22137156 - 2 Jul 2021
Cited by 21 | Viewed by 4998
Abstract
Micro RNAs (miRNAs) are a class of small non-coding RNAs that have a crucial role in cellular processes such as differentiation, proliferation, migration, and apoptosis. miRNAs may act as oncogenes or tumor suppressors; therefore, they prevent or promote tumorigenesis, and abnormal expression has [...] Read more.
Micro RNAs (miRNAs) are a class of small non-coding RNAs that have a crucial role in cellular processes such as differentiation, proliferation, migration, and apoptosis. miRNAs may act as oncogenes or tumor suppressors; therefore, they prevent or promote tumorigenesis, and abnormal expression has been reported in many malignancies. The role of miRNA in leukemia pathogenesis is still emerging, but several studies have suggested using miRNA expression profiles as biomarkers for diagnosis, prognosis, and response to therapy in leukemia. In this review, the role of miRNAs most frequently involved in leukemia pathogenesis is discussed, focusing on the class of circulating miRNAs, consisting of cell-free RNA molecules detected in several body fluids. Circulating miRNAs could represent new potential non-invasive diagnostic and prognostic biomarkers of leukemia that are easy to isolate and characterize. The dysregulation of some miRNAs involved in both myeloid and lymphoid leukemia, such as miR-155, miR-29, let-7, and miR-15a/miR-16-1 clusters is discussed, showing their possible employment as therapeutic targets. Full article
(This article belongs to the Special Issue The Role of MicroRNAs, tRNA Fragments, and Circular RNAs in Leukemia)
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