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Self-Organizing Maps of Molecular Descriptors for Sesquiterpene Lactones and Their Application to the Chemotaxonomy of the Asteraceae Family
Universidade Federal da Paraíba, Departamento de Engenharia e Meio Ambiente, Campus IV, 58297-000, Rio Tinto, PB, Brazil
Institute of Chemistry, University of São Paulo, Postal Box 26777, São Paulo, 05513-970, Brazil
Universidade Presbiteriana Mackenzie, Cep 01302-907, São Paulo, Brazil
Universidade Federal da Paraíba, Centro de Biotecnologia, Campus I 50670-910, João Pessoa, PB, Brazil
Universidade Federal de Mato Grosso, Instituto de Ciências Exatas da Terra – ICET, Rodovia MT-100 Km 3,5, 78698-000, Pontal do Araguaia, MT, Brazil
Universidade Estadual da Paraíba, Departamento de Ciências Biológicas, Laboratório de Síntese e Vetorização de Moléculas, 58070-450, João Pessoa, PB, Brazil
* Authors to whom correspondence should be addressed.
Received: 26 March 2012; in revised form: 11 April 2012 / Accepted: 12 April 2012 / Published: 20 April 2012
(This article belongs to the Special Issue Terpenoids
Abstract: The Asteraceae, one of the largest families among angiosperms, is chemically characterised by the production of sesquiterpene lactones (SLs). A total of 1,111 SLs, which were extracted from 658 species, 161 genera, 63 subtribes and 15 tribes of Asteraceae, were represented and registered in two dimensions in the SISTEMATX, an in-house software system, and were associated with their botanical sources. The respective 11 block of descriptors: Constitutional, Functional groups, BCUT, Atom-centred, 2D autocorrelations, Topological, Geometrical, RDF, 3D-MoRSE, GETAWAY and WHIM were used as input data to separate the botanical occurrences through self-organising maps. Maps that were generated with each descriptor divided the Asteraceae tribes, with total index values between 66.7% and 83.6%. The analysis of the results shows evident similarities among the Heliantheae, Helenieae and Eupatorieae tribes as well as between the Anthemideae and Inuleae tribes. Those observations are in agreement with systematic classifications that were proposed by Bremer, which use mainly morphological and molecular data, therefore chemical markers partially corroborate with these classifications. The results demonstrate that the atom-centred and RDF descriptors can be used as a tool for taxonomic classification in low hierarchical levels, such as tribes. Descriptors obtained through fragments or by the two-dimensional representation of the SL structures were sufficient to obtain significant results, and better results were not achieved by using descriptors derived from three-dimensional representations of SLs. Such models based on physico-chemical properties can project new design SLs, similar structures from literature or even unreported structures in two-dimensional chemical space. Therefore, the generated SOMs can predict the most probable tribe where a biologically active molecule can be found according Bremer classification.
Keywords: astearaceae; chemotaxonomy; sesquiterpene lactones
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Scotti, M.T.; Emerenciano, V.; Ferreira, M.J.P.; Scotti, L.; Stefani, R.; da Silva, M.S.; Junior, F.J.B.M. Self-Organizing Maps of Molecular Descriptors for Sesquiterpene Lactones and Their Application to the Chemotaxonomy of the Asteraceae Family. Molecules 2012, 17, 4684-4702.
Scotti MT, Emerenciano V, Ferreira MJP, Scotti L, Stefani R, da Silva MS, Junior FJBM. Self-Organizing Maps of Molecular Descriptors for Sesquiterpene Lactones and Their Application to the Chemotaxonomy of the Asteraceae Family. Molecules. 2012; 17(4):4684-4702.
Scotti, Marcus T.; Emerenciano, Vicente; Ferreira, Marcelo J. P.; Scotti, Luciana; Stefani, Ricardo; da Silva, Marcelo S.; Junior, Francisco Jaime B. Mendonça. 2012. "Self-Organizing Maps of Molecular Descriptors for Sesquiterpene Lactones and Their Application to the Chemotaxonomy of the Asteraceae Family." Molecules 17, no. 4: 4684-4702.