Synthesis of New Bis-Alkylated Phosphono Alkenyl Acyclonucleosides : (Z) and (E)-Diethyl-2-(3-alkyl pyrimidin-1-yl)ethylen-1-yl Phosphonate

Abstract

The E- and Z- phosphonoalkenyl acyclonucleosides of uracil and thymine were synthesized under Michael addition conditions. Introduction of an alkyl, alkenyl or alkynyl group at the N-3 position of the pyrimidine moiety was accomplished using potassium carbonate in DMF.

Introduction

The synthesis and biological evaluation of modified acyclonucleoside analogues have been very active research areas for a number of years. Several phosphonate acyclonucleoside analogues are presently known as potent antiviral agents [1,2]. Among them PMEA and HPMPA (Figure 1) derivatives have been noted to be a very potent inhibitor of HIV.

On the other hand, a number of reports from several laboratories have shown that the chemical modification at the N-3 position of pyrimidine nucleosides is applicable to the preparation of new nucleoside analogues possessing antiviral activity [3]. During our work on the study of the antiviral activity of a new class of modified acyclonucleosides [4], we recently prepared the novel series: (Z)- and (E)-diethyl-2-(purin-9-yl/pyrimidin-1-yl)ethylen-1-ylphosphonate. These compounds were tested for their in vitro inhibitory effect on the replication of a number of DNA and RNA virus. In order to study the effect of structural modification on antiviral activity and toxicity of the diethylethylenyl phosphonate acyclonucleosides analogues, we describe here the introduction of an ethoxycarbonylmethyl, allyl or propargyl group at the N-3 position of the pyrimidine moiety.

Results and Discussion

We have recently reported [4] a convenient procedure for coupling uracil and thymine with diethylethynyl phosphonate acyclic chain 3 using a Michael type addition (Scheme 1).

The N-1 alkylation of pyrimidine bases (1 or 2) with 3 using solid-liquid phase transfer catalysis conditions leads to two isomers (Z and E) in moderate overall yield (Z/E > 1). In order to increase the yield of product formation, the reaction was performed with 0.5 equivalent of potassium carbonate as base, and DMF as solvent. This process gave both Z and E isomers in a good overall yield (Z/E = 20/80) (

Table 1. Time(h), yield(%) and isomer ratios of compounds (4-5).

Compound	Time (h)	Yield (%)	% Z	% E
4	18	76	20	80
5	24	81	20	80

).

All isomers were isolated after purification by silica gel column chromatography. Confirmation of the isomeric structure of these products was based on ¹H-NMR spectra.³J_H-2, P coupling constants are characteristic for each isomers, the Z- compounds having a constant ranging from 42.2 to 42.7 ppm while in the E-isomers this value is markedly lower (18.3 ppm) (

Table 2. Chemical shifts and coupling constants of H₁ and H₂.

Compound	δH1 (ppm)	δH2 (ppm)	J1,P (Hz)	J2,P (Hz)	J1,2 (Hz)
4a	5.76	7.31	9.2	42.7	11.2
4b	6.13	7.71	10.6	18.3	16.0
5a	5.67	7.33	9.1	42.2	11.3
5b	6.05	7.72	10.7	18.3	15.9

).

The alkylation at the N-3 position of the uracil and thymine was carried out with potassium carbonate as base (1eq) and dry DMF as solvent. The use of 3 equivalents of the appropriate alkylating agent gave the desired products in a good yield (

Table 3. Time (h), yield (%) and isomer ratios of compounds 6-11.

Compounds	Time (h)	Yield (%)	%Z	%E
6	2	91	25	75
7	3	85	20	80
8	3	84	25	75
9	2.5	87	20	80
10	3	90	25	75
11	3	85	20	80

).

The comparison of reaction conditions listed in Table 1 and Table 3 has shown no significant effect on the stereoisomer ratio. On the other hand, no retro-Michael reaction was detected when the N-3- alkylation was carried out using one equivalent of potassium carbonate as base.

The alkylation position in compounds 6-11 was proven by the disappearance of the amide proton (N-H), shown in the corresponding ¹H-NMR spectra, previously recorded at 11.66 - 12.25 ppm for compounds 4-5. The structures of new compounds were assigned on the basis of the corresponding analytical and spectroscopic data.

Compounds 6-11 were tested for their in vitro inhibitory effects on the replication of a number of DNA viruses (i.e. herpes simplex virus type 1 and type 2, vaccina virus ...) and RNA viruses (Sindbis virus, Coxsackie virus, polio virus,...) in two cell systems (Vero and Hela). None of these compounds showed marked antiviral effect or detectable alteration of host-cell morphology at the concentration tested (CMI> 400µg/ml). When evaluation in anti-HIV assay (CEM host-cell), none of the tested compounds showed marked antiviral effect at a concentration of less than 8 µg/ml.

Experimental

General

¹H-NMR spectra were recorded using a Brucker AC 250 MHz spectrometer. Unless specified otherwise, the solvent used was DMSO-d₆. Chemical shifts are reported as parts per million (δ ppm) from TMS used as internal standard. Key: s (singlet), d (doublet), t (triplet), q (quartet), m (multiplet) and b (broad). Ultraviolet spectral (UV) were recorded with a Cary 219 spectrometer. Mass spectra (MS) were obtained with JEOL JMS DX 300 instrument using fast atomic bombardment (FAB positive – GT). Thin layer chromatography (T.L.C) was performed on MerckKiesegel 60 F254 plates and short- wave ultraviolet light (254 nm) was used to detect the UV-absorbing spots. Column chromatography separations were obtained on silica gel (0.063 - 0.2 mm Merck). Elemental analysis were determined by the French Microanalytical Central Service.

Bis alkylating coupling method :

To a solution of 1.45 mmoles of compound 4 or 5 and potassium carbonate (1.45 mmoles) in dry DMF (15mL), 4.35 mmoles of the alkylating agent were added. The reaction mixture was allowed to stir at room temperature for several hours (see Table 3) and the solvent was removed under reduced pressure. The residual oil was purified by silica gel column chromatography using ethylacetate/ hexane as eluant to give compounds 6a, 6b, ..., 11b as white oils.

(Z)-diethyl-2-(3-ethoxycarbonylmethyluracil-1-yl) ethylen-1-ylphosphonate (6a)

Yield: 23 %; eluant: hexane- 90% EtOAc, Rf = 0.37 (CH₂Cl₂/MeOH, 95/5); ¹H-NMR: 7.88 (d, 1H, H₆, J_{6, 5} = 8.1 Hz), 7.32 (dd, 1H, H₂, J_{2, 1} = 10.9 Hz, J_{2, P} = 41.3 Hz), 5.98 (d, 1H, H₅, J_{5, 6} = 8.1 Hz), 5.90 (dd, 1H, H₁, J_{1, 2} =10.9 Hz, J_{1, P} = 9.3 Hz), 4.57 (s, 2H, CH₂N-3), 4.14 (q, 2H, CO₂CH₂-, J_CH2CH3 = 7.1 Hz), 4.01 (qd, 4H, 2 x OCH₂, J_CH2-P = 7.9 Hz, J_CH2CH3 = 7.0 Hz), 1.22 (t, 6H, 2 x CH₃, J_CH2CH3 = 7.0 Hz); UV (MeOH) λ_max = 271 nm; MS, FAB positive, m/z = 361[M+H]⁺; Elem. Anal. Calcd. for C₁₄H₂₁N₂O₇P : C 46.67 H 5.87 N 7.77 Found : C 46.58 H 5.97 N 7.69.

(E)-diethyl-2-(3-ethoxycarbonylmethyl uracil-1-yl) ethylen-1-ylphosphonate (6b)

Yield: 68 %; eluant: hexane- 90% EtOAc, Rf = 0.38 (CH₂Cl₂/MeOH, 95/5); ¹H-NMR: 8.28 (d, 1H, H₆, J_{6, 5} = 8.1 Hz), 7.69 (dd, 1H, H₂, J_2,1 = 16.0 Hz, J_{2, P} = 18.1 Hz), 6.29 (dd, 1H, H₁), J_{1, 2} = 16.0 Hz, J_{1, P} = 10.3 Hz), 6.07 (d, 1H, H₅, J_{5, 6} = 8.1 Hz), 4.58 (s, 2H, CH₂N-3), 4.14 (q, 2H, CO₂CH₂-, J_CH2CH3 = 7.1 Hz), 4.01 ( qd, 4H, 2 x OCH₂, J_CH2-P = 8.0 Hz, J_CH2CH3 = 7.1 Hz), 1.22 (t, 6H, 2 x CH₃, J_CH2CH3 = 7.1 Hz); UV (MeOH) λ_max = 277 nm; MS, FAB positive, m/z = 361 [M+H]+; Elem. Anal. Calcd. for C₁₄H₂₁N₂O₇P : C 46.67 H 5.87 N 7.77 Found: C 46.73 H 5.94 N 7.69.

(Z)-diethyl-2-(3-ethoxycarbonylmethylthymin-1-yl)ethylen-1-ylphosphonate (7a)

Yield: 17 %; eluant: hexane- 70% EtOAc, Rf = 0.40 (CH₂Cl₂/MeOH, 95/5); ¹H-NMR: 7.86 (s, 1H, H₆), 7.34 (dd, 1H, H₂, J_{2, 1} = 11.1 Hz, J_{2, P} = 1.5 Hz), 5.83 (dd, 1H, H₁, J_{1, 2} = 11.1 Hz, J_{1, P} = 9.2 Hz), 4.58 (s, 2H, CH₂N-3), 4.14 (q, 2H, CO₂CH₂-, J_CH2CH3 = 7.1 Hz), 4.01 (qd, 4H, 2 OCH₂, J_CH2-P = 8.0 Hz, J_CH2CH3 = 7.1 Hz), 1.22 (m, 9H, 3x CH₃); UV (MeOH) λ_max = 278 nm; MS, FAB positive, m/z = 375 [M+H]⁺; Elem. Anal. Calcd. for C₁₅H₂₃N₂O₇P : C 48.13 H 6.19 N 7.48 Found : C 48.19 H 6.21 N 7.40.

(E)-diethyl-2-(3-ethoxycarbonylmethyl thymin-1-yl) ethylen-1-ylphosphonate (7b)

Yield: 68 %; eluant: hexane- 70% EtOAc, Rf = 0.38 (CH₂Cl₂/ MeOH, 95/ 5); ¹H-NMR: 8.21 (s, 1H, H₆), 7.72 (dd, 1H, H₂, J_2,1 = 15.9 Hz, J_{2, P} = 18.1 Hz), 6.20 (dd, 1H, H₁, J_{1, 2} = 15.9 Hz, J_{1, P} = 10.2 Hz), 4.60 (s, 2H, CH₂N-3), 4.14 (q, 2H, CO₂CH₂-, J_CH2CH3 = 7.1 Hz), 4.02 (qd, 4H, 2 x OCH₂, J_CH2-P = 7.9 Hz, J_CH2CH3 = 7.1 Hz), 1.91 (s, 3H, CH3-5), 1.23 (m, 9H, 3 x CH₃); UV (MeOH) λ_max = 284 nm; MS, FAB positive, m/z = 375 [M+H]⁺; Elem. Anal. Calcd. for C₁₅H₂₃N₂O₇P : C 48.13 H 6.19 N 7.48 Found: C 48.21 H 6.12 N 7.38.

(Z)-diethyl-2-(3-allyluracil-1-yl)ethylen-1-ylphosphonate (8a)

Yield: 21 %; eluant: hexane- 80% EtOAc, Rf = 0.42 (CH₂Cl₂/ MeOH, 95/5), ¹H-NMR: 7.83 (d, 1H, H₆, J_{6, 5} = 8.0 Hz), 7.33 (dd, 1H, H₂, J_{2, 1} = 11.0 Hz, J_{2, P} = 41.6 Hz), 5.91 (d, 1H, H₅, J_{5, 6} = 8.0 Hz), 5.83 (m., 2H, H₁=CH-), 5.10 (m, 2H, H₂C=C), 4.40 (d, 2H, CH₂N-3, J_CH2CH = 5.2 Hz), 4.00 ( qd, 4H, 2 x OCH₂, J_CH2-P = 7.8 Hz, J_CH2CH3 = 7.0 Hz), 1.21 (t, 6H, 2 x CH₃, J_CH2CH3 = 7.0 Hz); UV (MeOH) λ_max = 270 nm; MS, FAB positive, m/z = 315 [M+H]⁺; Elem. Anal. Calcd. for C₁₃H₁₉N₂O₅P : C 49.68 H 6.09 N 8.91 Found : C 49.61 H 6.13 N 8.88.

(E)-diethyl-2-(3-allyluracil-1-yl)ethylen-1-ylphosphonate (8b).

Yield: 63 %; eluant: hexane- 80% Ac OEt, Rf = 0.38 (CH₂Cl₂/ MeOH, 95/ 5); ¹H-NMR: 8.20 (d, 1H, H₆, J_{6, 5} = 8.1 Hz), 7.74 (dd, 1H, H₂, J_{2, 1} = 16.0 Hz, J_{2, P} = 18.2 Hz), 6.19 (dd, 1H, H₁, J_{1, 2} = 16.0 Hz, J_{1, P} = 10.4 Hz), 5.99 (d, 1H, H₅, J_{5, 6} = 8.1 Hz), 5.83 (m., 2H, H₁=CH-), 5.11 (m, 2H, H₂C=C), 4.41 (d, 2H, CH₂N-3, J_CH2CH- = 5.2 Hz), 4.01 (qd, 4H, 2 x OCH₂, J_CH2-P = 8.1 Hz, J_CH2CH3 = 7.0 Hz), 1.25 (t, 6H, 2 x CH₃, J_CH2CH3 = 7.0 Hz); UV (MeOH) λ_max = 278 nm; MS, FAB positive, m/z = 315 [M+H]⁺; Elem. Anal. Calcd. for C₁₃H₁₉N₂O₅P : C 49.68 H 6.09 N 8.91 Found : C 49.59 H 6.15 N 8.93.

(Z)-diethyl-2-(3-allylthymin-1-yl)ethylen-1-ylphosphonate (9a)

Yield: 17 %; eluant: hexane- 70% EtOAc, Rf = 0.47 (CH₂Cl₂/ MeOH, 95/ 5); ¹H-NMR: 7.82 (s, 1H, H₆), 7.35 (dd, 1H, H₂, J_{2, 1} =11.1 Hz, J_{2, P} = 41.8 Hz), 5.81 (m., 2H, H₁= CH-), 5.11 (m, 2H, H₂C=C), 4.42 (d, 2H, CH₂N-3, J_CH2CH=C = 5.2 Hz), 4.00 (qd, 4H, 2 x OCH₂, J_CH2-P = 7.9 Hz, J_CH2CH3 = 7.0 Hz), 1.85 (s, 1H, CH₃-5), 1.21 (t, 6H, 2 x CH₃, J_CH2CH3 = 7.0 Hz), UV (MeOH) λ_max = 278 nm, MS, FAB positive, m/z = 329 [M+H]⁺, Elem. Anal. Calcd. for C₁₄H₂₁N₂O₅P : C 51.22 H 6.45 N 8.53 Found : C 51.30 H 6.49 N 8.46.

(E)-diethyl-2-(3-allylthymin-1-yl)ethylen-1-ylphosphonate (9b).

Yield: 70 %; eluant: hexane- 70% EtOAc, Rf = 0.43 (CH₂Cl₂/ MeOH, 95/5); ¹H-NMR: 8.14 (s, 1H, H₆), 7.76 (dd, 1H, H₂, J_2,1 = 15.9 Hz, J_{2, P} = 18.2 Hz), 6.12 (dd, 1H, H₁, J_{1, 2} = 15.9 Hz, J_{1, P} = 10.5 Hz), 5.82 (m., 1H, = CH-), 5.11 (m, 2H, H₂C=C), 4.43 (d, 2H, CH₂N-3, J_CH2CH=C = 5.2 Hz), 4.01 (qd, 4H, 2 OCH₂, J_CH2-P = 7.9 Hz, J_CH2CH3 = 7.0 Hz), 1.89 (s, 1H, CH₃-5), 1.25 (t, 6H, 2 x CH₃, J_CH2CH3 = 7.0 Hz); UV (MeOH) λ_max = 282 nm; MS, FAB positive, m/z = 329 [M+H]⁺, Elem. Anal. Calcd. For C₁₄H₂₁N₂O₅P : C 51.22 H 6.45 N 8.53 Found : C 51.26 H 6.48 N 8.47.

(Z)-diethyl-2-(3-propargyluracil-1-yl)ethylen-1-ylphosphonate (10a)

Yield: 23 %; eluant: hexane-80% EtOAc, Rf = 0.45 (CH₂Cl₂/ MeOH, 95/5); ¹H-NMR (CDCl₃): 8.03 (d, 1H, H₆ , J_{6, 5} = 8.2 Hz), 7.38 (dd, 1H, H₂, J_2,1 = 11.4 Hz, J_{2, P} = 41.7 Hz), 5.85 (d, 1H, H₅, J_{5, 6} = 8.2 Hz), 5.49 (dd, 1H, H₁, J_{1, 2} = 11.4 Hz, J_{1, P} = 7.1 Hz), 4.67 (d, 2H, CH₂N-3, J_CH2C≡CH = 2.5 Hz), 4.07 (qd, 4H, 2 x OCH₂, JCH₂-P = 7.7 Hz, J_CH2CH3 = 7.0 Hz), 2.15 (t, 1H, HC≡C, J_HC≡CCH2 = 2.5 Hz), 1.28 (t, 6H, 2 x CH₃, J_CH2CH3 = 7.0 Hz); UV (MeOH) λ_max = 272 nm; MS, FAB positive, m/z = 312 [M+H]⁺; Elem. Anal. Calcd. for C₁₃H₁₇N₂O₅P : C 50.00 H 5.49 N 8.97 Found : C 49.93 H 5.53 N 8.88.

(E)-diethyl-2-(3-propargyl uracil-1-yl) ethylen-1-ylphosphonate (10b).

Yield: 67 %; eluant: hexane-80% EtOAc, Rf = 0.36 (CH₂Cl₂/MeOH, 95/5); ¹H-NMR (CDCl₃): 7.81 (dd, 1H, H₂, J_2,1 = 16.0 Hz, J_{2, P} = 17.5 Hz), 7.48 ( d, 1H, H₆, J_{6, 5} = 8.2 Hz), 5.92 (d, 1H, H₅, J_{5, 6} = 8.2 Hz), 5.68 (dd, 1H, H₁, J_{1, 2} = 16.0 Hz, J_{1, P} = 9.6 Hz), 4.66 (d, 2H, CH₂N-3, J_CH2C≡CH = 2.5 Hz), 4.09 (qd, 4H, 2 x OCH₂, J_CH2-P = 7.9 Hz, J_CH2CH3 = 7.1 Hz), 2.15 (t, 1H, HC≡C, J_HC≡CCH2 = 2.5 Hz), 1.29 (t, 6H, 2 x CH3, J_CH2CH3 = 7.1 Hz); UV (MeOH) λ_max = 276 nm; MS, FAB positive, m/z = 312 [M+H]⁺; Elem. Anal. Calcd. for C₁₃H₁₇N₂O₅P : C 50.00 H 5.49 N 8.97 Found : C 50.05 H 5.42 N 8.92.

(Z)-diethyl-2-(3-propargylthymin-1-yl)ethylen-1-yl- phosphon-ate (11a)

Yield: 17 %; eluant: hexane- 80% EtOAc, Rf = 0.36 (CH₂Cl₂/MeOH, 95/5); ¹H-NMR (CDCl₃): 7.98 (s, 1H, H₆), 7.42 (dd, 1H, H₂, J_2,1 = 11.5 Hz, J_{2, P} = 42.1 Hz), 5.42 (dd, 1H, H1, J_{1, 2} = 11.5 Hz, J_{1, P} = 7.1 Hz), 4.70 (d, 2H, CH₂N-3, J_CH2C≡CH = 2.5 Hz), 4.09 (qd, 4H, 2 x OCH₂, J_CH2-P = 7.9 Hz, J_CH2CH3 = 7.0 Hz), 2.16 (t, 1H, HC≡C, J_HC≡CCH2 = 2.5 Hz), 1.97 ( s, 3H, CH₃-5), 1.31 ( t, 6H, 2 x CH₃, J_CH2CH3 = 7.0 Hz); UV (MeOH) λ_max= 277 nm; MS, FAB positive, m/z = 326 [M+H]⁺; Elem. Anal. Calcd. for C₁₄H₁₉N₂O₅P : C 51.54 H 5.87 N 8.59 Found : C 51.59 H 5.95 N 8.55.

(E)-diethyl-2-(3-propargylthymin-1-yl)ethylen-1-yl-phosphonate (11b).

Yield: 68 %; eluant: hexane- 80% EtOAc, Rf = 0.39 (CH₂Cl₂/MeOH, 95/5); ¹H-NMR (CDCl₃): 7.86 (dd, 1H, H₂, J_2,1 = 16.0 Hz, J_{2, P} = 17.6 Hz), 7.28 ( s, 1H, H₆), 5.63 (dd, 1H, H₁ , J_{1, 2} = 16.0 Hz, J_{1, P} = 9.7 Hz), 4.69 (d, 2H, CH₂N-3, J_CH2C≡CH = 2.5 Hz), 4.09 (qd, 4H, 2 x OCH₂, J_CH2-P = 7.8 Hz, J_CH2CH3 = 7.1 Hz), 2.16 (t, 1H, HC≡C, J_HC≡CCH2 = 2.5 Hz), 1.99 (s, 3H, CH₃-5), 1.32 (t, 6H, 2 x CH₃, J_CH2CH3 = 7.0 Hz); UV (MeOH) λ_max = 280 nm; MS, FAB positive, m/z = 326 [M+H]⁺; Elem. Anal. Calcd. for C₁₄H₁₉N₂O₅P : C 51.54 H 5.87 N 8.59 Found : C 51.52 H 5.93 N 8.53.