Coordinating Metabolite Changes with Our Perception of Plant Abiotic Stress Responses: Emerging Views Revealed by Integrative—Omic Analyses
Abstract
:1. Introduction
2. Transcriptional Regulation of Metabolic Networks
3. Metabolic Regulation of Transcriptional Networks
3.1. Metabolic DNA and RNA Structural Modifiers
3.2. Retrograde Signaling
3.3. Sugar Signaling
Abiotic stress | Soluble sugar | Sugar response | Gene expression | Gene | Gene model | Enzyme activity | Enzyme | Reference |
---|---|---|---|---|---|---|---|---|
Cold | gluc, fruc | increase | increase | FXK3 | At5g51830 | nd | nd | [88] |
GOLS3 | At1g09350 | |||||||
HXK2 | At2g19860 | |||||||
RS5 | At5g40390 | |||||||
SPS1 | At5g11110 | |||||||
SPS1F | At5g20280 | |||||||
decrease | SSR | At1g79440 | ||||||
Nitrogen (N) deficiency | ∑sugar (suc + gluc + fruc) | increase | increase | TPP B | At1g78090 | increase | GlucoK | [89] [90] |
PGM | At1g78050 | FUM | ||||||
A/N-Inv D | At1g22650 | |||||||
G6PDH | At1g24280 | |||||||
PGDH | At1g64190 | |||||||
ABI4 | At2g40220 | |||||||
decrease | TPS3 | At1g17000 | decrease | AGPase | ||||
CWINV4 | At2g36190 | NADP-GAPDH | ||||||
NADP-IDH | ||||||||
NR | ||||||||
GS | ||||||||
AspAT | ||||||||
Potassium (K) deficiency | suc, gluc, fruc | increase | − | nd | nd | increase | FrucK | [91] |
NADP-ME | ||||||||
GS | ||||||||
GOGAT | ||||||||
decrease | NR | |||||||
Phosphate (P) deficiency | suc, gluc, fruc | increase | increase | PPCK1 | At1g08650 | increase | cFBPase | [90] |
PPCK2 | At3g04530 | SPS | ||||||
BAM5 | At4g15210 | PEPCase | ||||||
GWD3 | At4g24450 | GS | ||||||
GBS1 | At1g32900 | GDH | ||||||
GPT2 | At1g61800 | ShiDH | ||||||
ADG2 | At5g19220 | |||||||
APL3 | At4g39210 | |||||||
SPS4 | At4g10120 | |||||||
SPP1 | At1g51420 | |||||||
SUS3 | At3g43190 | |||||||
decrease | FLN1 | At3g54090 | decrease | PFP | ||||
FLN2 | At1g69200 | |||||||
Carbon availability | gluc | Increase (exogenous feeding) | increase | ABI4 | At2g40220 | nd | nd | [92] |
ABI5 | At2g36270 | |||||||
CTR1 | At5g03730 | |||||||
Combined heat and drought | suc, tre, gluc, fruc | increase | decrease | AMY1 | At4g25000 | nd | nd | [93] |
BAM5 | At4g15210 | |||||||
C/VIF1 | At1g47960 | |||||||
FLN1 | At3g54090 | |||||||
G6PDH6 | At5g40760 | |||||||
HXK2 | At2g19860 | |||||||
PSL5 | At5g63840 | |||||||
SPS1F | At5g20830 | |||||||
SPS1 | At5g20280 | |||||||
Heat | suc, gluc, fruc | increase | increase | NDB1 | At4g28220 | nd | nd | [93] |
VHA-A | At1g78900 | |||||||
GOLS1 | At2g47180 | |||||||
A/N-INVC | At3g06500 | |||||||
Drought | suc, gluc, fruc | increase | increase | APL3 | At4g39210 | nd | nd | [93] |
SPS1 | At5g11110 | |||||||
SUS1 | At5g20830 | |||||||
G6PDH6 | At5g40760 | |||||||
Drought | suc | increase | increase | CWINV1 | At3g13790 | nd | nd | [94,95] |
CINV1 | At1g35580 | |||||||
GDH1 | At5g18170 | |||||||
GDH2 | At5g07440 | |||||||
VAC-INV | At1g12240 | |||||||
decrease | ADK1 | At3g09820 | ||||||
GDH3 | At3g03910 | |||||||
Anoxia | gluc, fruc | increase | increase | ADH1 | At1g77120 | nd | nd | [16] |
SUS4 | At3g43190 | |||||||
Salinity | suc, gluc | increase | increase | PYD4 | At3g08860 | nd | nd | [96] |
BAM1 | At4g15210 | |||||||
GPAT5 | At3g11430 | |||||||
decrease | PDF1.2b | At2g26020 | ||||||
PDF1.2 | At5g44420 |
4. Integration with the Other—Omics Platforms: Phenomics, Genomics, Proteomics, and Metabolomics
5. Conclusions
Acknowledgements
Conflicts of Interest
References
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Radomiljac, J.D.; Whelan, J.; Van der Merwe, M. Coordinating Metabolite Changes with Our Perception of Plant Abiotic Stress Responses: Emerging Views Revealed by Integrative—Omic Analyses. Metabolites 2013, 3, 761-786. https://doi.org/10.3390/metabo3030761
Radomiljac JD, Whelan J, Van der Merwe M. Coordinating Metabolite Changes with Our Perception of Plant Abiotic Stress Responses: Emerging Views Revealed by Integrative—Omic Analyses. Metabolites. 2013; 3(3):761-786. https://doi.org/10.3390/metabo3030761
Chicago/Turabian StyleRadomiljac, Jordan D., James Whelan, and Margaretha Van der Merwe. 2013. "Coordinating Metabolite Changes with Our Perception of Plant Abiotic Stress Responses: Emerging Views Revealed by Integrative—Omic Analyses" Metabolites 3, no. 3: 761-786. https://doi.org/10.3390/metabo3030761