Biology

23 pages, 1137 KiB

Open AccessReview

Pain Chronicity and Relief: From Molecular Basis to Exercise-Based Rehabilitation

by Weidi Ni, Xin Kuang and Zheng Zhu

Biology 2025, 14(9), 1116; https://doi.org/10.3390/biology14091116 (registering DOI) - 23 Aug 2025

Chronic pain is a significant and complex health condition characterized by persistent or recurrent pain lasting more than three months. Exercise-based rehabilitation is an effective non-pharmacological intervention, yet its underlying mechanisms have not been fully elucidated. This review systematically maps the molecular pathways [...] Read more.

Chronic pain is a significant and complex health condition characterized by persistent or recurrent pain lasting more than three months. Exercise-based rehabilitation is an effective non-pharmacological intervention, yet its underlying mechanisms have not been fully elucidated. This review systematically maps the molecular pathways of exercise-induced analgesia onto the pathophysiological cascades of chronic pain, aiming to fill a key gap in the current literature. It explores the molecular and cellular mechanisms underpinning the pathophysiology of chronic pain, indicating that the persistence of chronic pain stems from peripheral sensitization driven by inflammatory mediators and central sensitization involving glial cell activation and N-methyl-D-aspartate (NMDA) receptor-mediated neuroplasticity. Exercise can interrupt these pathological cascades through multi-system adaptations, including activation of the endogenous opioid and serotonergic systems activation and anti-inflammation. However, a significant gap remains in translating this mechanistic understanding of chronic pain into optimized, personalized exercise prescriptions, requiring future research into different exercise modalities, sex-specific responses, and the impact of comorbidities. Full article

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20 pages, 1257 KiB

Open AccessArticle

Effects of Nitrogen–Phosphorus Co-Application on Biomass Allocation and Accumulation in Two-Year-Old Pinus yunnanensis Seedlings

by Jianzhen Liao, Yaqi Li, Boning Yang, Chiyu Zhou, Zixing Pan, Lin Chen, Nianhui Cai and Yulan Xu

Biology 2025, 14(9), 1115; https://doi.org/10.3390/biology14091115 - 22 Aug 2025

Abstract

Pinus yunnanensis is a significant native tree species in southwestern China, contributing substantially to the area’s ecological stability and economic growth. However, its growth rate tends to be relatively slow during the seedling stage, and fertilization is crucial to promote seedling growth. This [...] Read more.

Pinus yunnanensis is a significant native tree species in southwestern China, contributing substantially to the area’s ecological stability and economic growth. However, its growth rate tends to be relatively slow during the seedling stage, and fertilization is crucial to promote seedling growth. This study used two-year-old P. yunnanensis seedlings as experimental materials and applied a 3 × 3 factorial design, combining three nitrogen (N) levels (0, 0.4, and 0.8 g·plant⁻¹) supplied in the form of urea with three levels of phosphorus (P) (0, 0.8, and 1.6 g·plant⁻¹) supplied in the form of superphosphate to form nine treatments, denoted as T1 to T9. This study was carried out in the open-air nursery of Southwest Forestry University, with fertilization beginning in July and observations continuing until December of the same year. Using allometric growth analysis and constructing the fertilizer response regression equation, we investigated the effects of fertilization on biomass accumulation in P. yunnanensis. The findings revealed that fertilization significantly increased the biomass allocation ratio to roots but decreased the allocation to needles and aboveground parts (p < 0.05). Allometric growth analysis showed that root growth was more rapid than stem and needle growth, and the growth rate of belowground parts exceeded that of aboveground parts. Allometric growth between organs differed among treatments, whereas the allometric growth relationship between aboveground and belowground biomass showed no significant difference across treatments. Moderate N and P fertilizer application promoted biomass accumulation in all organs, with T5 (N: 0.4 g·plant⁻¹; P: 0.8 g·plant⁻¹) exhibiting the highest biomass accumulation. Based on the comprehensive analysis of optimal N and P fertilizer requirements for biomass accumulation across different organs, the recommended fertilizer application rates are as follows: N 0.5–0.6 g·plant⁻¹ and P 0.5–0.9 g·plant⁻¹, with an optimal N:P ratio ranging from 1:0.8 to 1:1.8. The results establish a scientific rationale for enhancing fertilization methods in P. yunnanensis seedling cultivation, contributing to the slow growth issue during the seedling stage. Full article

(This article belongs to the Section Conservation Biology and Biodiversity)

23 pages, 13740 KiB

Open AccessArticle

Mulberroside A: A Multi-Target Neuroprotective Agent in Alzheimer’s Disease via Cholinergic Restoration and PI3K/AKT Pathway Activation

by Jin Li, Jiawen Wang, Yaodong Li, Jingyi Guo, Ziliang Jin, Shourong Qiao, Yunxia Zhang, Guoyin Li, Huazhen Liu and Changjing Wu

Biology 2025, 14(9), 1114; https://doi.org/10.3390/biology14091114 - 22 Aug 2025

Abstract

Alzheimer’s disease (AD) is a progressive neurodegenerative disorder and the leading cause of dementia, with current therapies offering only limited symptomatic relief and lacking disease-modifying efficacy. Addressing this critical therapeutic gap, natural multi-target compounds like mulberroside A (MsA)—a bioactive glycoside from Morus alba [...] Read more.

Alzheimer’s disease (AD) is a progressive neurodegenerative disorder and the leading cause of dementia, with current therapies offering only limited symptomatic relief and lacking disease-modifying efficacy. Addressing this critical therapeutic gap, natural multi-target compounds like mulberroside A (MsA)—a bioactive glycoside from Morus alba L.—present promising alternatives. This study investigated MsA’s neuroprotective potential using scopolamine-induced AD-like mice and N2a/APP695swe cells. In vivo, MsA significantly ameliorated cognitive deficits and neuronal loss, concurrently enhancing cholinergic neurotransmission through increased acetylcholine levels and inhibited acetylcholinesterase (AChE)/butyrylcholinesterase (BChE) activities. MsA also upregulated neurotrophic factors (BDNF, CREB) in critical brain regions. In vitro, MsA restored cholinergic function, mitigated oxidative stress, and crucially reduced amyloid-β (Aβ) production by dual regulation of APP processing: promoting the non-amyloidogenic pathway via ADAM10 upregulation and inhibiting the amyloidogenic pathway via suppression of BACE1 and γ-secretase components. Mechanistically, these multi-target benefits were mediated by MsA’s activation of the PI3K/AKT pathway, which triggered downstream inhibitory phosphorylation of GSK3β—directly reduced tau hyperphosphorylation—and activation of CREB/BDNF signaling. Collectively, our findings demonstrate that MsA confers comprehensive neuroprotection against AD pathology by simultaneously targeting cholinergic dysfunction, oxidative stress, Aβ accumulation, tau phosphorylation, and impaired neurotrophic signaling, highlighting its strong therapeutic candidacy. Full article

(This article belongs to the Section Neuroscience)

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12 pages, 1163 KiB

Open AccessReview

Comparative Anatomy of the Coracobrachialis Muscle: Insights into Human Typical and Variant Morphology

by George Triantafyllou, Alexandros Samolis, Ingrid C. Landfald, Łukasz Olewnik, Judney C. Cavalcante and Maria Piagkou

Biology 2025, 14(9), 1113; https://doi.org/10.3390/biology14091113 - 22 Aug 2025

Abstract

The coracobrachialis muscle (CB) is a phylogenetically conserved component of the anterior compartment of the upper limb, offering critical insights into evolutionary anatomy, developmental biology, and human morphological variation. This mini review synthesizes findings from comparative anatomical studies, embryological data, cadaveric dissections, and [...] Read more.

The coracobrachialis muscle (CB) is a phylogenetically conserved component of the anterior compartment of the upper limb, offering critical insights into evolutionary anatomy, developmental biology, and human morphological variation. This mini review synthesizes findings from comparative anatomical studies, embryological data, cadaveric dissections, and clinical reports to explore the CB’s morphology, ontogeny, and medical relevance. Among tetrapods, the CB consistently originates from the coracoid process and inserts into the humerus, with interspecies morphological adaptations reflecting specific locomotor functions such as climbing, grasping, or digging. In humans, embryological studies confirm a common developmental origin with the biceps brachii, accounting for the frequent occurrence of variant configurations, including multiple heads and accessory slips such as the coracobrachialis longus (CBL) and brevis (CBB). These variants may contribute to clinical conditions such as musculocutaneous nerve entrapment+ or subcoracoid impingement. They may also be employed in reconstructive surgical procedures. A deeper understanding of CB morphology within an evolutionary framework improves anatomical interpretation, enhances clinical safety, and reduces diagnostic ambiguity. This review highlights the significance of integrating evolutionary and developmental perspectives in the study of human muscle variation. Full article

(This article belongs to the Special Issue Feature Papers on Developmental and Reproductive Biology)

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51 pages, 2520 KiB

Open AccessReview

Bone-Derived Factors: Regulating Brain and Treating Alzheimer’s Disease

by Qiao Guan, Yanting Cao, Jun Zou and Lingli Zhang

Biology 2025, 14(9), 1112; https://doi.org/10.3390/biology14091112 - 22 Aug 2025

Abstract

In recent years, the bidirectional regulatory mechanism of the bone-brain axis has become a hotspot for interdisciplinary research. In this paper, we systematically review the anatomical and functional links between bone and the central nervous system, focusing on the regulation of brain function [...] Read more.

In recent years, the bidirectional regulatory mechanism of the bone-brain axis has become a hotspot for interdisciplinary research. In this paper, we systematically review the anatomical and functional links between bone and the central nervous system, focusing on the regulation of brain function by bone-derived signals and their clinical translational potential. At the anatomical level, the blood–brain barrier permeability mechanism and the unique structure of the periventricular organs establish the anatomical basis for bone-brain information transmission. Innovative discoveries indicate that the bone cell network (bone marrow mesenchymal stem cells, osteoblasts, osteoclasts, and bone marrow monocytes) directly regulates neuroplasticity and the inflammatory microenvironment through the secretion of factors such as osteocalcin, lipid transporter protein 2, nuclear factor κB receptor-activating factor ligand, and fibroblast growth factor 23, as well as exosome-mediated remote signaling. Clinical studies have revealed a bidirectional vicious cycle between osteoporosis and Alzheimer’s disease: reduced bone density exacerbates Alzheimer’s disease pathology through pathways such as PDGF-BB, while AD-related neurodegeneration further accelerates bone loss. The breakthrough lies in the discovery that anti-osteoporotic drugs, such as bisphosphonates, improve cognitive function. In contrast, neuroactive drugs modulate bone metabolism, providing new strategies for the treatment of comorbid conditions. Additionally, whole-body vibration therapy shows potential for non-pharmacological interventions by modulating bone-brain interactions through the mechano-osteoclast signaling axis. In the future, it will be essential to integrate multiple groups of biomarkers to develop early diagnostic tools that promote precise prevention and treatment of bone-brain comorbidities. This article provides a new perspective on the mechanisms and therapeutic strategies of neuroskeletal comorbidities. Full article

(This article belongs to the Special Issue Bone Cell Biology)

21 pages, 13794 KiB

Open AccessArticle

Functional Annotation and Comparative Analysis of Cytochrome P450 Protein Family Genes in Nine Chironomidae Species

by Wenbin Liu, Anmo Zhou, Jiaxin Nie, Ziming Shao, Zhe Nie, Yajin Zhang, Chunmian Liu, Chuncai Yan, Shaobo Gao and Yiwen Wang

Biology 2025, 14(9), 1111; https://doi.org/10.3390/biology14091111 - 22 Aug 2025

Abstract

Cytochrome P450 monooxygenases (P450s) are one of the most widespread enzyme superfamilies in the biological world. In insects, P450 proteins play a crucial role in the synthesis of endogenous substances and the metabolism of xenobiotics. To date, extensive research has been conducted on [...] Read more.

Cytochrome P450 monooxygenases (P450s) are one of the most widespread enzyme superfamilies in the biological world. In insects, P450 proteins play a crucial role in the synthesis of endogenous substances and the metabolism of xenobiotics. To date, extensive research has been conducted on P450 gene-mediated detoxification and metabolism across multiple insect species. While Chironomidae species—dominant benthic organisms inhabiting diverse ecological niches and playing critical ecological roles—remain largely uncharacterized in terms of P450 protein annotation, with the exception of a single study on Propsilocerus akamusi. In this study, we expanded the annotation scope by identifying the P450 protein genes in eight additional Chironomidae species. A total of 577 P450 protein genes were annotated across the eight species, which could be classified into the following four distinct clans: 50 belonging to the CYP2 clan, 258 to the CYP3 clan, 198 to the CYP4 clan, and 71 to the Mito clan. Phylogenetic analysis using Drosophila melanogaster as an outgroup revealed that the CYP2 clan and the Mito clan are highly conserved during evolution, while the CYP3 clan and the CYP4 clan have undergone significant expansion. Most P450 proteins in Chironomidae species exhibit clear orthologous relationships with their D. melanogaster counterparts. Our research contributes to a better understanding of the evolutionary processes and the physiological functions of P450 proteins in Chironomidae species and lays the foundation for elucidating the role of P450 in environmental adaptability among the Chironomidae species inhabiting diverse habitats. Full article

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14 pages, 3896 KiB

Open AccessArticle

Liming-Induced Nitrous Oxide Emissions from Acidic Soils Dominated by Stimulative Nitrification

by Xiaoxiao Xiang, Hongyang Gong, Waqar Ahmed, Rodney B. Thompson, Wenxuan Shi, Junhui Yin and Qing Chen

Biology 2025, 14(9), 1110; https://doi.org/10.3390/biology14091110 - 22 Aug 2025

Abstract

Nitrous oxide (N₂O) is a potent greenhouse gas, with emissions occurring mostly from agricultural soils, especially acidic soils. This research aimed to elucidate the response of soils dominated by nitrification-driven N₂O production to alkaline amendments, given that nitrification is [...] Read more.

Nitrous oxide (N₂O) is a potent greenhouse gas, with emissions occurring mostly from agricultural soils, especially acidic soils. This research aimed to elucidate the response of soils dominated by nitrification-driven N₂O production to alkaline amendments, given that nitrification is a key process in N₂O emission. This study investigated the impact of an alkaline mineral amendment (CSMP) on N₂O emission, nitrification rate, and functional gene abundance. Using a robotic automated incubation system, CSMP both alone and in combination with urea was applied to two acidic soils (CL: pH 5.81; WS: pH 4.91). The results demonstrated that, relative to the CK, the CSMP-only treatment significantly increased N₂O emissions by 18.4-fold in these acidic soils, with a 61.6-fold increase in the U + CSMP treatment. This very large increase was driven by a rise in AOB-amoA abundance and a concurrent decline in AOA-amoA, which was confirmed by structural equation modeling, which showed that the increase in pH strongly influenced N₂O emission primarily through AOB-amoA. Although CSMP is effective for reversing soil acidification, its use must be carefully managed to prevent stimulation of N₂O emissions. Future strategies should explore combining CSMP with approaches that can mitigate nitrification while maintaining its soil improvement benefits. This study provides critical insights for developing balanced management practices that address both soil health and climate change mitigation in acidic agricultural systems. Full article

(This article belongs to the Special Issue Biogeochemical Element Cycling in Plant–Soil Systems: Implications for Ecosystem Dynamics and Services)

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27 pages, 2232 KiB

Open AccessReview

Exploring Metabolic and Immunological Biomarkers for Oral Squamous Cell Carcinoma: Potential Targets for Precision Therapy

by Rajneesh, Rahul Tiwari, Vishal Kumar Singh, Awnish Kumar, Sanjana Mehrotra, Vibhav Gautam, J. F. Neville, Vyomika Bansal, Rajiv Pathak, Akhilesh Kumar Singh and Rajiv Kumar

Biology 2025, 14(9), 1109; https://doi.org/10.3390/biology14091109 - 22 Aug 2025

Abstract

Oral squamous cell carcinoma (OSCC) is a malignant neoplasm of the oral epithelium that constitutes majority of oral cancers and is strongly associated with risk factors such as tobacco use and genetic alterations. Mortality rates for OSCC are high because many cases are [...] Read more.

Oral squamous cell carcinoma (OSCC) is a malignant neoplasm of the oral epithelium that constitutes majority of oral cancers and is strongly associated with risk factors such as tobacco use and genetic alterations. Mortality rates for OSCC are high because many cases are misdiagnosed or identified at later stages, and treatment options are limited with high recurrence. Therefore, there is an urgent need for improved diagnostic and therapeutic strategies. OSCC tumor cells, like those in other solid malignancies, exhibit significant alterations in metabolic pathways and the immune microenvironment. These changes can serve as valuable biomarkers for early detection and as targets for innovative treatment strategies. This review summarizes the current understanding of metabolic and immunological biomarkers that are either currently in use for OSCC or are in different phases of clinical trials. Full article

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22 pages, 3688 KiB

Open AccessArticle

Assessing Birds of Prey as Biological Pest Control: A Comparative Study with Hunting Perches and Rodenticides on Rodent Activity and Crop Health

by Naama Ronen, Anna Brook and Motti Charter

Biology 2025, 14(9), 1108; https://doi.org/10.3390/biology14091108 - 22 Aug 2025

Abstract

Rodent damage significantly affects agriculture around the world. Rodenticides can sometimes control pests, but they are costly, may cause secondary poisoning to nontarget wildlife, and can become less efficient over time due to bait shyness and resistance. Using wildlife as biological pest control [...] Read more.

Rodent damage significantly affects agriculture around the world. Rodenticides can sometimes control pests, but they are costly, may cause secondary poisoning to nontarget wildlife, and can become less efficient over time due to bait shyness and resistance. Using wildlife as biological pest control agents, particularly barn owls (Tyto spp.), has been suggested as an alternative. Barn owl nest boxes and hunting perches have been added to increase predator pressure, yet few studies have examined their effectiveness. We conducted a field study in forty-five 10 × 10 m² plots to compare three treatments (biological pest control by adding hunting perches, 1080 rodenticide, and control) on rodent (vole) activity and crop health (alfalfa, Medicago sativa) using unmanned aerial system (UAS) remote sensing and ground surveys. Additionally, we used 24/7 video cameras and a machine learning (YOLOv5) object detection algorithm to determine whether hunting perches increase the presence of diurnal and nocturnal raptors. Rodent activity increased during the study and did not vary among the treatments across all three treatment groups, indicating that neither the biological pest control nor the rodenticides prevented the rodent population from increasing. Moreover, the vegetation indices clearly showed that the alfalfa has become increasingly damaged over time, due to the rising damage caused by rodents. There were significantly more raptors in plots with hunting perches than in control plots and those treated with rodenticides. Specifically, barn owls and diurnal raptors (mainly black-shouldered kites) spent 97.92% more time on hunting perch plots than rodenticide plots and 97.61% more time on hunting perch plots than control plots. The number of barn owls was positively related to vole activity, indicating a bottom-up process, while the number of black-shouldered kites was unrelated to vole activity. Even though hunting perches effectively increased the presence and activity of diurnal and nocturnal raptors, rodent populations increased. Future research should investigate whether hunting perches can increase raptor populations and improve crop health in crops beyond alfalfa, which is known to be particularly challenging to control for voles. Full article

(This article belongs to the Section Conservation Biology and Biodiversity)

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12 pages, 3269 KiB

Open AccessArticle

A Bacterium Derived from the Ovary of the Black Soldier Fly (Hermetia illucens) Attract Oviposition of the Host

by Muyang He, Yi Wang, Wenxuan Xu, Guohui Yu and Xun Yan

Biology 2025, 14(9), 1107; https://doi.org/10.3390/biology14091107 - 22 Aug 2025

Abstract

The black soldier fly, BSF (Hermetia illucens) has extensive applications in insect protein production and organic waste conversion, serving as a crucial resource insect. However, large-scale breeding faces challenges such as low adult mating rates, unstable oviposition, and inefficient egg collection, [...] Read more.

The black soldier fly, BSF (Hermetia illucens) has extensive applications in insect protein production and organic waste conversion, serving as a crucial resource insect. However, large-scale breeding faces challenges such as low adult mating rates, unstable oviposition, and inefficient egg collection, which significantly hinder the industrial application of BSF. In this study, we aimed to enhance the oviposition efficiency of BSF by utilizing the microbes within it. We isolated a strain of Serratia marcescens from the ovaries of the BSF, which can attract BSF to lay eggs by producing dimethyl disulfide. Genome analysis of the bacterium revealed a total length of 5,244,812 bp with a GC content of 59.18%. Based on KEGG database annotations, 5486 genes were identified through genome sequencing. The findings of this study provide a theoretical foundation for enhancing BSF production efficiency and offer insights for further microbial regulation development. Full article

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21 pages, 3906 KiB

Open AccessArticle

Systematic Survey and Expression Analysis of the Glutaredoxin Gene Family in Capsicum annuum Under Hypoxia Stress

by Yixian Guo, Sirui Ma, Ziying Li, Yang Yu, Di Liu, Tianyi Zhang, Ruiwen Hu, Demian Zhou, Ying Zhou, Shi Xiao, Qinfang Chen and Lujun Yu

Biology 2025, 14(9), 1106; https://doi.org/10.3390/biology14091106 - 22 Aug 2025

Abstract

Glutaredoxins (GRXs) are important proteins in plant development and environmental adaptation. Despite extensive characterization of GRX gene family members in various plant species, limited research has been conducted on the identification and functional analysis of GRXs in the economically important Solanaceae family pepper [...] Read more.

Glutaredoxins (GRXs) are important proteins in plant development and environmental adaptation. Despite extensive characterization of GRX gene family members in various plant species, limited research has been conducted on the identification and functional analysis of GRXs in the economically important Solanaceae family pepper (Capsicum annuum). This study identified 35 typical GRX genes in pepper and categorized them into three distinct groups: CC-, CGFS-, and CPYC-type, based on the phylogenetic topology, which was consistent with motif or domain arrangement, and gene structures. Furthermore, the determination of ω values indicated that purifying selection was a significant factor in the evolutionary diversification of GRX genes in the eudicot family. Intra-genome investigations demonstrated that both segmental and tandem duplications were involved in the expansion of CaGRX genes. Moreover, examination of collinearity within the Solanaceae family revealed 53 orthologous pairs of GRX genes. Additionally, prediction of cis-regulatory elements and analysis of expression profiles revealed the significant involvement of GRX genes in plant stress response, specifically in relation to hypoxia and submergence. Subsequent subcellular localization examination suggested CaGRX may be involved in the endomembrane system and regulation of oxidative balance in plants. Collectively, these findings enhance our comprehension of the structural and functional properties of GRX in pepper, and establish a groundwork for subsequent functional characterization of the CaGRX genes. Full article

(This article belongs to the Section Plant Science)

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22 pages, 1205 KiB

Open AccessArticle

Transcriptome Screening and Identification of Chemosensory Genes in the Goji Berry Psyllid, Bactericera gobica (Hemiptera: Psyllidae)

by Zhanghui Liu, Yang Ge, Zekun Zhang, Jiayi Liang, Chuanzhi Kang, Chengcai Zhang, Kang Chen, Xiufu Wan, Liu Zhang, Wangpeng Shi and Honghao Chen

Biology 2025, 14(8), 1105; https://doi.org/10.3390/biology14081105 - 21 Aug 2025

Abstract

Goji berry is widely consumed worldwide and holds substantial market value, yet its cultivation faces significant threats from the goji berry psyllid (Bactericera gobica). Chemosensory-related genes play critical roles in regulating insect behaviors, which makes them key molecular targets for the [...] Read more.

Goji berry is widely consumed worldwide and holds substantial market value, yet its cultivation faces significant threats from the goji berry psyllid (Bactericera gobica). Chemosensory-related genes play critical roles in regulating insect behaviors, which makes them key molecular targets for the development of environmentally friendly pest control strategies. However, chemosensory genes in B. gobica have not been previously identified or characterized. In this study, we sequenced transcriptomes from the antennae and body tissues of male and female B. gobica and annotated genes associated with chemosensory functions. We identified 15 odorant-binding proteins (OBPs), 18 chemosensory proteins (CSPs), 3 sensory neuron membrane proteins (SNMPs), 26 odorant receptors (ORs), 8 gustatory receptors (GRs), and 32 ionotropic receptors (IRs). Transcriptome data and a quantitative real-time PCR confirmed the tissue-specific expression patterns of these genes, with several genes, including three BgobOBPs, eight BgobCSPs, one BgobOR, two BgobGRs, and two BgobIR, highly expressed in the antennae, suggesting their role in olfactory recognition. BgobGR1 was most highly expressed among GRs, indicating its important role in gustatory perception. We also identified gene BgobGR5 with differential expression patterns between females and males. Our study represents the first characterization of chemosensory genes in a Bactericera species. Full article

(This article belongs to the Special Issue Research on Morphology and Sensorimotor Systems of Insect Antennae)

17 pages, 1803 KiB

Open AccessArticle

Effect of Nitrogen Application Rate on Growth Physiology, Yield Quality, and Nitrogen Fertilizer Utilization Rate of Liriope muscari in Pots

by Yuhong Yuan, Jihong Xiao, Shaoyan Liu, Tianyou He, Jundong Rong and Yushan Zheng

Biology 2025, 14(8), 1104; https://doi.org/10.3390/biology14081104 - 21 Aug 2025

Abstract

Liriope muscari is a medicinal and ornamental herbaceous plant with significant economic value, as its tuberous roots are used for medicinal purposes. However, the current production of medicinal plants is characterized by wasteful use of resources and ecological risks caused by the unreasonable [...] Read more.

Liriope muscari is a medicinal and ornamental herbaceous plant with significant economic value, as its tuberous roots are used for medicinal purposes. However, the current production of medicinal plants is characterized by wasteful use of resources and ecological risks caused by the unreasonable application of nitrogen fertilizers. In this study, based on uniform application of phosphorus and potassium fertilizers, six nitrogen application levels were set in pot experiments (expressed as N): N0: 0 kg/ha, N1: 208.33 kg/ha, N2: 416.66 kg/ha, N3: 625 kg/ha, N4: 833.33 kg/ha, N5: 1041.66 kg/ha). The morphological characteristics, photosynthetic physiology, tuber yield and quality, and seven nitrogen fertilizer utilization indices of L. muscari were analyzed and measured. Correlation analysis and structural equation modeling (SEM) were employed to investigate the mechanism by which nitrogen influences its growth and development, photosynthetic characteristics, tuber yield and quality, and nitrogen fertilizer utilization efficiency. The results showed that (1) nitrogen significantly promoted plant height, crown width, tiller number, and chlorophyll synthesis , with the N3 treatment (625 kg/ha) reaching the peak value, and the crown width and tiller number increasing by 26.44% and 38.90% compared to N0; the total chlorophyll content and net photosynthetic rate increased by 39.67% and 77.04%, respectively, compared to N0; high nitrogen (N5) inhibited photosynthesis and increased intercellular CO₂ concentration; (2) Fresh weight of tuberous roots, polysaccharide content, and saponin C content peaked at N3 (34.67 g/plant, 39.89%, and 0.21%), respectively, representing increases of 128.69%, 28.37%, and 33.66% compared to N0; (3) Nitrogen uptake, nitrogen fertilizer utilization efficiency, agronomic utilization efficiency, and apparent utilization efficiency were optimal at N3, while high nitrogen (N4–N5) reduced nitrogen fertilizer efficiency by 40–60%; (4) SEM analysis indicated that tiller number and transpiration rate directly drive yield, while stomatal conductance regulates saponin C synthesis. Under the experimental conditions, 625 kg/ha is the optimal nitrogen application rate balancing yield, quality, and nitrogen efficiency. Excessive nitrogen application (>833 kg/ha) induces photosynthetic inhibition and “luxury absorption”, leading to source-sink imbalance and reduced accumulation of secondary metabolites. This study provides a theoretical basis and technical support for the precise management of nitrogen in Liriope-type medicinal plants. It is expected to alleviate the contradictions of “high input, low output, and heavy pollution” in traditional fertilization models. Full article

13 pages, 724 KiB

Open AccessArticle

Aquaculture Strategy and Genetic Diversity of Argopecten irradians concentricus in Beibu Gulf, China

by Qishuai Wang, Jie Feng, Yanping Qin and Ying Pan

Biology 2025, 14(8), 1103; https://doi.org/10.3390/biology14081103 - 21 Aug 2025

Abstract

Argopecten irradians concentricus has become one of the pillar industries in the aquaculture of the Beibu Gulf since it was introduced into China in 1991. This study examined how stocking density and culture site affects growth in breeding populations, compared their growth performance [...] Read more.

Argopecten irradians concentricus has become one of the pillar industries in the aquaculture of the Beibu Gulf since it was introduced into China in 1991. This study examined how stocking density and culture site affects growth in breeding populations, compared their growth performance and genetic diversity within control populations, and identified optimal culture locations for A. i. concentricus in the Beibu Gulf. The environmental investigation results revealed that among the three aquaculture sites of Beihai (BH), Qinzhou (QZ) and Fangchenggang (FCG), the fluctuation ranges of salinity, pH, and dissolved oxygen at the BH site were relatively narrower. The sum of all algal genus abundances of the three sites were 155,370 cells∙L⁻¹, 931 cells∙L⁻¹, and 47,957 cells∙L⁻¹, respectively. Chaetoceros was the sole dominant algal genus in both BH and FCG, while Pleurosigma was the only dominant genus in QZ. The experimental results of growth demonstrated a significant negative correlation between growth rate and stocking density (p < 0.05). The mortalities of the QZ populations were significantly higher than those of the BH and FCG populations (p < 0.05). In comparison with the control populations, the breeding populations exhibited better growth performance but lower genetic diversity. FCG is a suitable location for cultivating the breeding population of A. i. concentricus. The findings of this study can serve as a reference for further understanding of the aquaculture strategy and genetic diversity of A. i. concentricus in the Beibu Gulf, China. Full article

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19 pages, 6450 KiB

Open AccessArticle

Starvation Influences the Microbiota in the Stomach of the Corallivorous Crown-of-Thorns Starfish

by Ying Zhang, Fuxiang Lai, Litong Yang, Liling Dai, Nan Su, Jianxing Hu, Huizhen Chen, Qian Gao, Fanyu Zheng and Chang Chen

Biology 2025, 14(8), 1102; https://doi.org/10.3390/biology14081102 - 21 Aug 2025

Abstract

The crown-of-thorns starfish (CoTS, Acanthaster spp.), is responsible for a considerable amount of coral loss in the tropical Indo-Pacific region. After decimating coral populations through predation, it is expected that CoTS will face food scarcity before coral recovery. It is unclear how CoTS [...] Read more.

The crown-of-thorns starfish (CoTS, Acanthaster spp.), is responsible for a considerable amount of coral loss in the tropical Indo-Pacific region. After decimating coral populations through predation, it is expected that CoTS will face food scarcity before coral recovery. It is unclear how CoTS respond to starvation stress. Therefore, we conducted a four-month starvation stress experiment on CoTS, and analyzed the response characteristics of its stomach bacterial communities using high-throughput 16S rRNA sequencing. The results showed no significant differences in the α-diversity of the stomach bacterial community, but the β-diversity differed significantly between fed and starved CoTS. The bacterial community composition in the CoTS stomach changed dramatically, manifesting mainly from Tenericutes to Proteobacteria at the phylum level, and from a community dominated by digestive bacteria (Mycoplasma) to beneficial bacteria (Endozoicomonas) at the genus level. Furthermore, co-occurrence network analysis revealed that starvation reduced the network stability of the bacteria community, but improved network modularity, which may have contributed to the CoTS adaptation to chronic starvation. This study provides a basis for elucidating the mechanism of starvation resistance in the crown-of-thorns starfish. Full article

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20 pages, 1320 KiB

Open AccessArticle

The Nuclear Ribosomal Transcription Units of Two Echinostomes and Their Taxonomic Implications for the Family Echinostomatidae

by Yu Cao, Ye Li, Zhong-Yan Gao and Bo-Tao Jiang

Biology 2025, 14(8), 1101; https://doi.org/10.3390/biology14081101 - 21 Aug 2025

Abstract

Echinostomatidae is a taxonomically complex group with substantial species diversity and richness. The vast majority of species in this family parasitize birds and mammals, including humans, causing significant economic losses and medical costs. In this study, Echinostoma miyagawai (Digenea, Echinostomatidae) and Patagifer bilobus [...] Read more.

Echinostomatidae is a taxonomically complex group with substantial species diversity and richness. The vast majority of species in this family parasitize birds and mammals, including humans, causing significant economic losses and medical costs. In this study, Echinostoma miyagawai (Digenea, Echinostomatidae) and Patagifer bilobus (Digenea, Echinostomatidae) were isolated from domestic duck and Grus japonensis, respectively. The nearly complete ribosomal transcription unit (rTU) sequences of two echinostomes were obtained, with the rTU for P. bilobus being obtained for the first time. The nearly complete rTU sequence of P. bilobus (6790 bp) and E. miyagawai (6893 bp) encompass the small-subunit (18S) ribosomal DNA (rDNA), internal transcribed spacer 1 (ITS1), 5.8S rDNA, internal transcribed spacer 2 (ITS2), and large-subunit (28S) rDNA. The complete lengths of 18S, ITS1, 5.8S, ITS2, and 28S sequences for E. miyagawai are 1989 bp, 444 bp, 162 bp, 431 bp, and 3858 bp, respectively. For P. bilobus, complete or nearly complete lengths of these sequences are 1929 bp (nearly complete), 419 bp, 162 bp, 432 bp, and 3848 bp (nearly complete), respectively. The 18S, ITS, and 28S sequences of E. miyagawai show the highest sequence similarity with other E. miyagawai. The ITS and 28S sequences of P. bilobus show the highest sequence similarity with other P. bilobus, while 18S sequence shows the highest similarity with E. miyagawai. This is likely due to the unavailability of the 18S sequence of P. bilobus in GenBank. Repeat sequences were identified in 18S, ITS1, ITS2, and 28S sequences, with the 28S sequence containing the most repeats and the 5.8S sequence having none. The results of phylogenetic reconstruction indicated that E. miyagawai clusters with other Echinostoma spp., while P. bilobus clusters with other Patagifer spp., forming sister taxa. This study not only provides the first rTU sequence for P. bilobus but also reinforces the sister group status of Patagifer to Echinostoma through phylogenetic evidence. Finally, this study represents the first record of the G. japonensis as a new host for P. bilobus and the first report of a bird from the crane family (Gruidae) as a host for any echinostome species. These findings are significant as they expand our understanding of the host range and ecological interactions of Echinostomatidae. The data obtained provide a valuable resource of molecular markers for studying the taxonomy, population genetics, and systematics of the family Echinostomatoidea. This research contributes to a more comprehensive understanding of the evolutionary relationships and biodiversity within this complex group of parasites, which is crucial for developing effective strategies to mitigate their impact on both wildlife and human health. Full article

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27 pages, 5967 KiB

Open AccessArticle

Landscape Pattern and Plant Diversity in an Arid Inland River Basin: A Structural Equation Modeling Approach Based on Multi-Source Data

by Hui Shi and Tiange Shi

Biology 2025, 14(8), 1100; https://doi.org/10.3390/biology14081100 - 21 Aug 2025

Abstract

Biodiversity in arid river basins is highly climate-sensitive, yet the multi-pathway relations among the environment, landscape structure, connectivity, and plant diversity remain unclear. Framed by a scale–place–space sustainability perspective, we evaluated, in the Hotan River Basin (NW China), how the environmental factors affect [...] Read more.

Biodiversity in arid river basins is highly climate-sensitive, yet the multi-pathway relations among the environment, landscape structure, connectivity, and plant diversity remain unclear. Framed by a scale–place–space sustainability perspective, we evaluated, in the Hotan River Basin (NW China), how the environmental factors affect plant diversity directly and indirectly via the landscape configuration and functional connectivity. We integrated Landsat images (2000, 2012, and 2023), 57 vegetation plots, topographic and meteorological data; computed the landscape indices and Conefor connectivity metrics (PC, IIC); and fitted a partial least squares structural equation model (PLS-SEM). From 2000 to 2023, the bare land declined, converted mainly into shrubland and cropland; the construction land is projected to expand under SSP1-2.6/SSP2-4.5/SSP5-8.5 by 2035 and 2050. The landscape metrics showed a rising PD, DIVISION, and SHDI/SHEI, and a declining AI and CONTAG, indicating finer, more heterogeneous mosaics. Plant diversity peaked on low–moderate slopes and with ~32–36 mm annual precipitation. The PLS-SEM revealed significant direct effects on diversity from environmental factors (positive), landscape structure (negative), and connectivity (positive). The dominant chained mediation (environment → structure → connectivity → diversity) indicated that environmental constraints first reconfigure the spatial structure and then propagate to community responses via connectivity, highlighting connectivity’s role in buffering climatic stress and stabilizing communities. The findings provide a quantitative framework to inform biodiversity conservation and sustainable landscape planning in arid basins. Full article

(This article belongs to the Section Conservation Biology and Biodiversity)

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18 pages, 359 KiB

Open AccessReview

Nitrogen-Driven Orchestration of Lateral Root Development: Molecular Mechanisms and Systemic Integration

by Xichao Sun, Yingchen Gu, Yingqi Liu, Zheng Liu and Peng Wang

Biology 2025, 14(8), 1099; https://doi.org/10.3390/biology14081099 - 21 Aug 2025

Abstract

N, as plants’ most essential nutrient, profoundly shapes root system architecture (RSA), with LRs being preferentially regulated. This review synthesizes the intricate molecular mechanisms underpinning N sensing, signaling, and its integration into developmental pathways governing LR initiation, primordium formation, emergence, and elongation. We [...] Read more.

N, as plants’ most essential nutrient, profoundly shapes root system architecture (RSA), with LRs being preferentially regulated. This review synthesizes the intricate molecular mechanisms underpinning N sensing, signaling, and its integration into developmental pathways governing LR initiation, primordium formation, emergence, and elongation. We delve deeply into the roles of specific transporters (NRT1.1, nitrate transporter 2.1 (NRT2.1)), transcription factors (Arabidopsis nitrate regulated 1 (ANR1), NLP7, TGACG motif-binding factor (TGA), squamosa promoter-binding protein-like 9 (SPL9)) and intricate hormone signaling networks (auxin, abscisic acid, cytokinins, ethylene) modulated by varying N availability (deficiency, sufficiency, excess) and chemical forms (NO₃⁻, NH₄⁺, organic N). Emphasis is placed on the systemic signaling pathways, including peptide-mediated long-distance communication (CEP—C-terminally encoded peptide receptor 1 (CEPR1)) and the critical role of the shoot in modulating root responses. Furthermore, we explore the emerging significance of carbon–nitrogen (C/N) balance, post-translational modifications (ubiquitination, phosphorylation), epigenetic regulation, and the complex interplay with other nutrients (phosphorus (P), sulfur (S)) and environmental factors in shaping N-dependent LR plasticity. Recent advances utilizing single-cell transcriptomics and advanced imaging reveal unprecedented cellular heterogeneity in LR responses to N. Understanding this sophisticated regulatory network is paramount for developing strategies to enhance nitrogen use efficiency (NUE) in crops. This synthesis underscores how N acts as a master regulator, dynamically rewiring developmental programs through molecular hubs that synchronize nutrient sensing with root morphogenesis—a key adaptive strategy for resource acquisition in heterogeneous soils. Full article

(This article belongs to the Section Plant Science)

23 pages, 3815 KiB

Open AccessArticle

Galangin and 1′-Acetoxychavicol Acetate from Galangal (Alpinia galanga) Suppress Lymphoma Growth via c-Myc Downregulation and Apoptosis Induction

by Sirinya Moakmamern, Lapamas Rueankham, Natsima Viriyaadhammaa, Kittikawin Panyakham, Natnicha Khakhai, Pinyaphat Khamphikham, Suwit Duangmano, Siriporn Okonogi, Sawitree Chiampanichayakul and Songyot Anuchapreeda

Biology 2025, 14(8), 1098; https://doi.org/10.3390/biology14081098 - 21 Aug 2025

Abstract

The c-Myc protein, a key regulator of cell proliferation, growth, and apoptosis in B-cell lymphocytes, is frequently dysregulated in Burkitt’s lymphoma. Zingiberaceae plants—galangal (Alpinia galanga), black turmeric (Curcuma aeroginosa), black ginger (Kaempferia parviflora), phlai lueang (Zingiber [...] Read more.

The c-Myc protein, a key regulator of cell proliferation, growth, and apoptosis in B-cell lymphocytes, is frequently dysregulated in Burkitt’s lymphoma. Zingiberaceae plants—galangal (Alpinia galanga), black turmeric (Curcuma aeroginosa), black ginger (Kaempferia parviflora), phlai lueang (Zingiber montanum), and phlai dum (Zingiber ottensii)—are traditionally used as herbal remedies and may serve as natural anti-lymphoma agents. In this study, extracts from these five plants were screened for cytotoxicity against Raji and Daudi lymphoma cell lines and compared with their effects on normal peripheral blood mononuclear cells (PBMCs). Galangal extract exhibited the strongest cytotoxic effects on lymphoma cells. Its major bioactive compounds, galangin and 1′-acetoxychavicol acetate (ACA), showed selective cytotoxicity, with ACA being more potent. ACA significantly suppressed both c-Myc and phosphorylated c-Myc (p-c-Myc) protein levels and induced dose-dependent apoptosis in lymphoma cells. Cell cycle analysis revealed arrest at specific phases, supporting its anti-proliferative action. Furthermore, network pharmacology and pathway enrichment analyses implicated ACA in the modulation of oncogenic PI3K-Akt and MAPK pathways. These findings highlight ACA as a promising plant-derived therapeutic candidate for lymphoma, acting through c-Myc suppression, cell cycle arrest, and apoptosis induction. Full article

(This article belongs to the Special Issue Nature's Pharmacy: Ethnobotanical Approaches to Medicinal Plant Research for the Discovery and Development of Potential Phytochemicals)

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