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Epigenomes, Volume 8, Issue 1

2024 March - 11 articles

Cover Story: SWI/SNF enzymes are heterogeneous multi-subunit complexes that harness ATP hydrolysis to remodel chromatin, facilitating crucial cellular processes such as transcription, DNA replication, and repair. Within mammalian cells, distinct sub-complexes, namely cBAF, ncBAF, and PBAF, exhibit diverse subunit compositions and perform distinct genomic functions. Dysregulation of the SWI/SNF complex and its sub-complexes is a prominent feature of many human cancers, rendering SWI/SNF subunits appealing targets for therapeutic intervention. Current approaches in cancer therapeutics focus on pharmacological agents engineered to selectively bind and disrupt the activities of SWI/SNF complexes or specific sub-complexes, offering promising avenues for cancer treatment. View this paper
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Articles (11)

  • Article
  • Open Access
1 Citations
4,100 Views
13 Pages

Temporal and spatial epigenetic modifications in the brain occur during ontogenetic development, pathophysiological disorders, and aging. When epigenetic marks, such as histone methylations, in brain autopsies or biopsy samples are studied, it is cri...

(This article belongs to the Collection Feature Papers in Epigenomes)
  • Article
  • Open Access
4 Citations
4,580 Views
16 Pages

Type 1 diabetes (T1D) is a metabolic disease resulting from progressive autoimmune destruction of insulin-producing pancreatic beta cells. Although the majority of beta cells are lost in T1D, a small subset undergoes senescence, a stress response inv...

  • Review
  • Open Access
12 Citations
6,117 Views
11 Pages

Epidermis is the outer skin layer built of specialized cells called keratinocytes. Keratinocytes undergo a unique differentiation process, also known as cornification, during which their gene expression pattern, morphology and other properties change...

  • Review
  • Open Access
7 Citations
4,945 Views
20 Pages

The mammalian sexes are distinguished by the X and Y chromosomes. Whereas males harbor one X and one Y chromosome, females harbor two X chromosomes. To equalize X-linked gene expression between the sexes, therian mammals have evolved X-chromosome ina...

(This article belongs to the Special Issue X-Chromosome Inactivation)
  • Review
  • Open Access
32 Citations
14,901 Views
22 Pages

Targeting SWI/SNF Complexes in Cancer: Pharmacological Approaches and Implications

  • Megan R. Dreier,
  • Jasmine Walia and
  • Ivana L. de la Serna

SWI/SNF enzymes are heterogeneous multi-subunit complexes that utilize the energy from ATP hydrolysis to remodel chromatin structure, facilitating transcription, DNA replication, and repair. In mammalian cells, distinct sub-complexes, including cBAF,...

  • Review
  • Open Access
5 Citations
6,597 Views
22 Pages

Orchestrating Asymmetric Expression: Mechanisms behind Xist Regulation

  • Samuel Jesus Luchsinger-Morcelle,
  • Joost Gribnau and
  • Hegias Mira-Bontenbal

Compensation for the gene dosage disequilibrium between sex chromosomes in mammals is achieved in female cells by repressing one of its X chromosomes through a process called X chromosome inactivation (XCI), exemplifying the control of gene expressio...

(This article belongs to the Special Issue X-Chromosome Inactivation)
  • Article
  • Open Access
7 Citations
3,939 Views
21 Pages

Angio-Long Noncoding RNA MALAT1 (rs3200401) and MIAT (rs1061540) Gene Variants in Ovarian Cancer

  • Manal S. Fawzy,
  • Afaf T. Ibrahiem,
  • Dalia Mohammad Osman,
  • Amany I. Almars,
  • Maali Subhi Alshammari,
  • Layan Tariq Almazyad,
  • Noof Daif Allah Almatrafi,
  • Renad Tariq Almazyad and
  • Eman A. Toraih

The genotyping of long non-coding RNA (lncRNA)-related single-nucleotide polymorphisms (SNPs) could be associated with cancer risk and/or progression. This study aimed to analyze the angiogenesis-related lncRNAs MALAT1 (rs3200401) and MIAT (rs1061540...

  • Article
  • Open Access
10 Citations
5,577 Views
21 Pages

Sex-Specific Associations between Prenatal Exposure to Di(2-ethylhexyl) Phthalate, Epigenetic Age Acceleration, and Susceptibility to Early Childhood Upper Respiratory Infections

  • Sarah M. Merrill,
  • Nicole Letourneau,
  • Gerald F. Giesbrecht,
  • Karlie Edwards,
  • Julia L. MacIsaac,
  • Jonathan W. Martin,
  • Amy M. MacDonald,
  • David W. Kinniburgh,
  • Michael S. Kobor and
  • The APrON Study Team
  • + 2 authors

Di(2-ethylhexyl) phthalate (DEHP) is a common plasticizer that can affect immune system development and susceptibility to infection. Aging processes (measured as epigenetic age acceleration (EAA)) may mediate the immune-related effects of prenatal ex...

(This article belongs to the Collection Feature Papers in Epigenomes)
  • Article
  • Open Access
8 Citations
5,348 Views
26 Pages

Epigenetics of Genes Preferentially Expressed in Dissimilar Cell Populations: Myoblasts and Cerebellum

  • Melanie Ehrlich,
  • Kenneth C. Ehrlich,
  • Michelle Lacey,
  • Carl Baribault,
  • Sagnik Sen,
  • Pierre-Olivier Estève and
  • Sriharsa Pradhan

While studying myoblast methylomes and transcriptomes, we found that CDH15 had a remarkable preference for expression in both myoblasts and cerebellum. To understand how widespread such a relationship was and its epigenetic and biological correlates,...

(This article belongs to the Collection Feature Papers in Epigenomes)
  • Review
  • Open Access
15 Citations
6,101 Views
19 Pages

Transposable elements (TEs) are major components of plant genomes with the ability to change their position in the genome or to create new copies of themselves in other positions in the genome. These can cause gene disruption and large-scale genomic...

(This article belongs to the Collection Epigenetic Control in Plants)
  • Review
  • Open Access
7 Citations
7,047 Views
31 Pages

While reports on the generational inheritance of a parental response to stress have been widely reported in animals, the molecular mechanisms behind this phenomenon have only recently emerged. The booming interest in epigenetic inheritance has been f...

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Epigenomes - ISSN 2075-4655