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Int. J. Mol. Sci. 2017, 18(8), 1676; doi:10.3390/ijms18081676

Modeling the Colchicum autumnale Tubulin and a Comparison of Its Interaction with Colchicine to Human Tubulin

1
INSERM 1052/CNRS 5286/UCBL, Cancer Center Research of Lyon, 69008 Lyon, France
2
Medicinal Chemistry Department, Heliopolis University, Cairo-Belbeis Desert Rd, El-Nahda, El Salam, Cairo Governorate 11777, Egypt
3
Department of Oncology, University of Alberta, Edmonton, AB T6G 1Z2, Canada
4
Department of Biological Sciences and Department of Medicine, University of Alberta, Edmonton, AB T6G 2E9, Canada
*
Author to whom correspondence should be addressed.
Received: 31 May 2017 / Revised: 27 July 2017 / Accepted: 28 July 2017 / Published: 2 August 2017
(This article belongs to the Special Issue Microtubule-Targeting Agents)
View Full-Text   |   Download PDF [4101 KB, uploaded 2 August 2017]   |  

Abstract

Tubulin is the target for many small-molecule natural compounds, which alter microtubules dynamics, and lead to cell cycle arrest and apoptosis. One of these compounds is colchicine, a plant alkaloid produced by Colchicum autumnale. While C. autumnale produces a potent cytotoxin, colchicine, and expresses its target protein, it is immune to colchicine’s cytotoxic action and the mechanism of this resistance is hitherto unknown. In the present paper, the molecular mechanisms responsible for colchicine resistance in C. autumnale are investigated and compared to human tubulin. To this end, homology models for C. autumnale α-β tubulin heterodimer are created and molecular dynamics (MD) simulations together with molecular mechanics Poisson–Boltzmann calculations (MM/PBSA) are performed to determine colchicine’s binding affinity for tubulin. Using our molecular approach, it is shown that the colchicine-binding site in C. autumnale tubulin contains a small number of amino acid substitutions compared to human tubulin. However, these substitutions induce significant reduction in the binding affinity for tubulin, and subsequently fewer conformational changes in its structure result. It is suggested that such small conformational changes are insufficient to profoundly disrupt microtubule dynamics, which explains the high resistance to colchicine by C. autumnale. View Full-Text
Keywords: tubulin; colchicine; C. autumnale; binding site; cytotoxicity; molecular modeling tubulin; colchicine; C. autumnale; binding site; cytotoxicity; molecular modeling
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This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. (CC BY 4.0).

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MDPI and ACS Style

Spasevska, I.; Ayoub, A.T.; Winter, P.; Preto, J.; Wong, G.K.-S.; Dumontet, C.; Tuszynski, J.A. Modeling the Colchicum autumnale Tubulin and a Comparison of Its Interaction with Colchicine to Human Tubulin. Int. J. Mol. Sci. 2017, 18, 1676.

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