Plant Genomics 2019

© 2022 by the authors; CC BY-NC-ND license

Aristolochia; chloroplast genome; molecular evolution; compare analysis; phylogeny; brassinosteroid-signaling kinase; gene family; expression profile; alternative splicing; intron retention; genome-wide analysis; drought tolerance; foxtail millet; LIM genes; transgenic rice; protein phosphatase (PP2C); cotton; syntenic relationships; expression patterns; evolutionary analysis; Populus trichocarpa; multiple organellar RNA editing factor; drought stress; RNA editing; genome; β-glucosidase; Brassica rapa; BrBGLU10; pollen development; co-expression analysis; VQ genes family; Eucalyptus grandis; expression pattern; plant hormones; abiotic stress; calcium-dependent protein kinases; CDPK-related kinases; evolutionary analysis; expression pattern; abiotic stress; cucurbitaceae; hst1; Na⁺ accumulation; SNP; rapid generation advance; salt tolerant; variant annotation; whole-genome sequencing; expression; genome-wide; identification of peroxidase genes; duplication pattern; stress; cassava; ABCDE model; cereals; evolutionary relationships; flower organ identity; floral speciation; MADS-box genes; maize; ZmTCP; natural variation; drought tolerance; subgroup IId; CsWRKY7; flowering; Arabidopsis; Camellia sinensis; pomegranate; chloroplast genome; sequence diversity; site-specific selection; phylogeny; tomato; MADS-box; genome-wide analysis; floral organ; fruit development; polygalacturonase (PGs), pectin methylesterase (PMEs), collinearity analysis; gene duplications; expression profiling; grapevine; Rehmannia glutinosa L.; replant disease; rhizosphere microbes; NB-LRR; plant hormone; apple; aquaporin; functional analysis; stress tolerance; Salicaceae; phylogenetic relationship; plastid genome; comparative genomics; repeat sequences; stress marker genes; sesame; gene co-expression; abiotic stress tolerance; hub genes; meta-analysis; agrobacterium; transient expression; virus-induced gene silencing (VIGS); tobacco rattle virus (TRV); cassava (Manihot esculenta); chalcone synthase; chromatin accessibility; epigenetic inheritance; genetic engineering; methylation; ODNs; CRISPR/Cas9; genome editing; plant breeding; multiplex genome editing; crop improvement; TALEN; ZFN; biotic stress; abiotic stress; avocado; carotenoid biosynthesis; mesocarp; seed; de novo assembly from short read sequencing; full-length transcript sequencing; differentially expressed genes; gene dosage; pigment; turnip; gene expression; antioxidant; nutritional quality; B3 superfamily; transcription factor; ovule abortion; Vitis vinifera; expression analysis; cold response; Pittosporum tobira; leaf variegation; linoleic acid; ROS scavenging enzyme; heat shock protein; invasive weed; Rhizoctonia solani; gene expression; phytohormone signaling; systemic signal; plant defense; calcium-dependent protein kinases; calcium signaling; ABA; drought; salinity; citrulline; genome-wide association study; haplotype; watermelon; acetolactate synthase; ferrochelatase; rice; large grain gene; large grain-isogenic Koshihikari; fine mapping; NGS; GW2; co-integration; gene recombination; semidwarf gene; d60; linkage; chromosome 2; Brachypodium; comparative chromosome barcoding; dysploidy; karyotype structure and evolution; model grass genus; molecular cytogenetics; polyploidy; plant genome; artificial microRNA; gene silencing; Arabidopsis; rice; Lagerstroemia indica; gene expression; ornamental value; anthocyanins; leaf coloration; directional improvement; YABBY; pineapple; expression pattern; subcellular localization; abiotic stress; oak species identification; chloroplast genome; Quercus; mutation hotspots; Centranthera grandiflora Benth; transcriptome; catalpol biosynthesis; acteoside biosynthesis; azafrin biosynthesis; wheat; Dasypyrum villosum; alien substitution line; GISH; molecular marker; marker-assisted selection; regulation; RNA-seq; abiotic stress; biosynthesis pathway; chalcones; stilbenes; common bean; Fusarium oxysproum; plant–pathogen interaction; transcriptome; metabolome; evolution; genome fractionation; ABC transporters; transcription factors; transposable elements; whole-genome duplication; RNA-sequencing; ChIP-sequencing; transcriptome; transcriptional regulatory mechanism; data integration; karyopherin; solanum tuberosum; abiotic stress; expression analysis; chemical fungicide; disease control; Neoscytalidium dimidiatum; royal poinciana; stem canker; UAE; bioinformatics; grapevine; ovule abortion; VvGAST; GASR; Cis-elements; wheat; wheat genome; kernel hardness; Puroindoline; Puroindoline b-2 variants; genotype-to-phenotype association; synteny; phylogenetic analysis; wheat; genomic selection; missing data; minor allele frequency; GDSL lipase; GPAT6; cutin; habaneros; Capsicum chinense; fruit; RNA-Seq; flax; genome-wide association study (GWAS); single nucleotide polymorphism (SNP); genomic selection; prediction accuracy; quantitative trait loci (QTL); quantitative trait nucleotides (QTNs); Fabaceae; Lupinus; glutamine synthetase (GS); phosphoenolpyruvate carboxylase (PEPC); phylogeny; evolution; gene families; duplication/triplication; structural genomics; genome organization; genome evolution; microRNA; miRNA156; seed development; fatty acid synthesis; linseed flax; anthocyanins; anthocyanin biosynthetic genes; cis-regulatory motifs; DEGs; network analysis; qRT-PCR; reddish purple Chinese cabbage; transcriptome; transcription factors; abscisic acid; flavonolignans; fruit development; gene expression; metabolite profiling; Silybum marianum; silymarin; aquaporins; bright yellow-2 suspension cells; Nicotiana tabacum; substrate specificity; phylogeny; wheat; cereals; TaCKX1; TaCKX expression; grain yield; cytokinins; phytohormones; gene silencing; RNAi; wheat spikes; genome-wide identification; expression analysis; 2OGD family; hormone biosynthetic and metabolism genes; tomato fruit ripening; Brachypodium; DNA methylation; drought; flowering; genome; phenomics