Agriculture 2014, 4(2), 199-216; doi:10.3390/agriculture4020199
Article

Rapid Development of Microsatellite Markers for Plantago ovata Forsk.: Using Next Generation Sequencing and Their Cross-Species Transferability

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Received: 7 February 2014; in revised form: 6 May 2014 / Accepted: 6 June 2014 / Published: 20 June 2014
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Abstract: Isabgol (Plantago ovata Forsk.) is an important medicinal plant having high pharmacological activity in its seed husk, which is substantially used in the food, beverages and packaging industries. Nevertheless, isabgol lags behind in research, particularly for genomic resources, like molecular markers, genetic maps, etc. Presently, molecular markers can be easily developed through next generation sequencing technologies, more efficiently, cost effectively and in less time than ever before. This study was framed keeping in view the need to develop molecular markers for this economically important crop by employing a microsatellite enrichment protocol using a next generation sequencing platform (ion torrent PGM™) to obtain simple sequence repeats (SSRs) for Plantago ovata for the very first time. A total of 3447 contigs were assembled, which contained 249 SSRs. Thirty seven loci were randomly selected for primer development; of which, 30 loci were successfully amplified. The developed microsatellite markers showed the amplification of the expected size and cross-amplification in another six species of Plantago. The SSR markers were unable to show polymorphism within P. ovata, suggesting that low variability exists within genotypes of P. ovata. This study suggests that PGM™ sequencing is a rapid and cost-effective tool for developing SSR markers for non-model species, and the markers so-observed could be useful in the molecular breeding of P. ovata.
Keywords: isabgol; ion torrent PGM technology; microsatellite; transferability
This is an open access article distributed under the Creative Commons Attribution License which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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MDPI and ACS Style

Fougat, R.S.; Joshi, C.; Kulkarni, K.; Kumar, S.; Patel, A.; Sakure, A.; Mistry, J. Rapid Development of Microsatellite Markers for Plantago ovata Forsk.: Using Next Generation Sequencing and Their Cross-Species Transferability. Agriculture 2014, 4, 199-216.

AMA Style

Fougat RS, Joshi C, Kulkarni K, Kumar S, Patel A, Sakure A, Mistry J. Rapid Development of Microsatellite Markers for Plantago ovata Forsk.: Using Next Generation Sequencing and Their Cross-Species Transferability. Agriculture. 2014; 4(2):199-216.

Chicago/Turabian Style

Fougat, Ranbir S.; Joshi, Chaitanya; Kulkarni, Kalyani; Kumar, Sushil; Patel, Anand; Sakure, Amar; Mistry, Jigar. 2014. "Rapid Development of Microsatellite Markers for Plantago ovata Forsk.: Using Next Generation Sequencing and Their Cross-Species Transferability." Agriculture 4, no. 2: 199-216.

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