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Microorganisms, Volume 9, Issue 10

2021 October - 176 articles

Cover Story: Myxobacteria are abundant and virtually ubiquitous environmental organisms. They have large genomes and engage in complicated behaviours, including communal predation and multicellular fruiting body formation. Myxobacterial fruiting bodies were first described and pictured by Roland Thaxter in 1892, and in 2006, the first myxobacterial genome was sequenced. Fifteen years later, more than 160 myxobacterial sequences are publicly available, and our understanding of myxobacterial biology and evolution has been transformed as a consequence. View this paper.
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Articles (176)

  • Article
  • Open Access
28 Citations
3,723 Views
12 Pages

Detection of Clinical and Subclinical Lumpy Skin Disease Using Ear Notch Testing and Skin Biopsies

  • Laetitia Aerts,
  • Andy Haegeman,
  • Ilse De Leeuw,
  • Wannes Philips,
  • Willem Van Campe,
  • Isabelle Behaeghel,
  • Laurent Mostin and
  • Kris De Clercq

Lumpy skin disease (LSD) diagnosis is primarily based on clinical surveillance complemented by PCR of lesion crusts or nodule biopsies. Since LSD can be subclinical, the sensitivity of clinical surveillance could be lower than expected. Furthermore,...

(This article belongs to the Special Issue Capripoxviruses: A Continuing Worldwide Threat to Sheep, Goats and Cattle)
  • Article
  • Open Access
11 Citations
6,049 Views
10 Pages

Antimicrobial Efficacy of Contact Lens Solutions Assessed by ISO Standards

  • Cindy McAnally,
  • Rhonda Walters,
  • Allison Campolo,
  • Valerie Harris,
  • Jamie King,
  • Megan Thomas,
  • Manal M Gabriel,
  • Paul Shannon and
  • Monica Crary

Microbial keratitis (MK) is an eye infection caused by opportunistic bacteria or fungi, which may lead to sight-threatening corneal ulcers. These microorganisms can be introduced to the eye via improper contact lens usage or hygiene, or ineffective m...

(This article belongs to the Special Issue Ocular Infections and Microbiota in Health and Disease)
  • Article
  • Open Access
36 Citations
9,304 Views
20 Pages

Novel Phage-Derived Depolymerase with Activity against Proteus mirabilis Biofilms

  • Cormac J. Rice,
  • Stephen A. Kelly,
  • Seamus C. O’Brien,
  • Erinn M. Melaugh,
  • Jan C. B. Ganacias,
  • Zheng Hua Chai,
  • Brendan F. Gilmore and
  • Timofey Skvortsov

The adherence of Proteus mirabilis to the surface of urinary catheters leads to colonization and eventual blockage of the catheter lumen by unique crystalline biofilms produced by these opportunistic pathogens, making P. mirabilis one of the leading...

(This article belongs to the Special Issue Bacteriophages-Based Technologies for a One Health Society: Applications in Clinical, Veterinary, and Industrial Settings)
  • Article
  • Open Access
2 Citations
3,081 Views
14 Pages

Effect of 17β-Estradiol, Progesterone, and Tamoxifen on Neurons Infected with Toxoplasma gondii In Vitro

  • María de la Luz Galván Ramírez,
  • Judith Marcela Dueñas-Jiménez,
  • Adrián Fernando Gutiérrez-Maldonado and
  • Laura Rocío Rodríguez Pérez

Toxoplasma gondii (T. gondii) is the causal agent of toxoplasmosis, which produces damage in the central nervous system (CNS). Toxoplasma–CNS interaction is critical for the development of disease symptoms. T. gondii can form cysts in the CNS; howeve...

(This article belongs to the Special Issue Advances in the Diagnosis, Detection, Epidemiology, and Control of Toxoplasma gondii)
  • Communication
  • Open Access
11 Citations
4,248 Views
10 Pages

Plant diseases may survive and be spread by infected seeds. In this study we monitored the longevity of 14 seed-borne pathogens in 9 crop species commonly grown in the Nordic countries, in addition to a sample of sclerotia of Sclerotinia sclerotiorum...

(This article belongs to the Section Plant Microbe Interactions)
  • Article
  • Open Access
19 Citations
5,769 Views
10 Pages

Interactions between a widely used polycationic polymer, polyethyleneimine (PEI), and a Gram-negative bacteria, E. coli, are investigated using atomic force microscopy (AFM) quantitative imaging. The effect of PEI, a known membrane permeabilizer, is...

(This article belongs to the Special Issue The Role of Atomic Force Microscopy in Microbiology: Sensing the Cell Surface)
  • Review
  • Open Access
52 Citations
14,687 Views
20 Pages

What Do We Know about Candida auris? State of the Art, Knowledge Gaps, and Future Directions

  • Victor Garcia-Bustos,
  • Marta D. Cabanero-Navalon,
  • Amparo Ruiz-Saurí,
  • Alba C. Ruiz-Gaitán,
  • Miguel Salavert,
  • María Á. Tormo and
  • Javier Pemán

Candida auris has unprecedently emerged as a multidrug resistant fungal pathogen, considered a serious global threat due to its potential to cause nosocomial outbreaks and deep-seated infections with staggering transmissibility and mortality, that ha...

(This article belongs to the Section Medical Microbiology)
  • Article
  • Open Access
18 Citations
3,955 Views
18 Pages

Recovery of Mycobacteria from Heavily Contaminated Environmental Matrices

  • Vit Ulmann,
  • Helena Modrá,
  • Vladimir Babak,
  • Ross Tim Weston and
  • Ivo Pavlik

For epidemiology studies, a decontamination method using a solution containing 4.0% NaOH and 0.5% tetradecyltrimethylammonium bromide (TDAB) represents a relatively simple and universal procedure for processing heavily microbially contaminated matric...

(This article belongs to the Special Issue Nontuberculous Mycobacteria: Ecology and Impact on Animal and Human Health)
  • Communication
  • Open Access
1 Citations
3,503 Views
8 Pages

Novel RNA Extraction Method for Dual RNA-seq Analysis of Pathogen and Host in the Early Stages of Yersinia pestis Pulmonary Infection

  • Ofir Israeli,
  • Inbar Cohen-Gihon,
  • Moshe Aftalion,
  • David Gur,
  • Yaron Vagima,
  • Ayelet Zauberman,
  • Yinon Levy,
  • Anat Zvi,
  • Theodor Chitlaru and
  • Avital Tidhar
  • + 1 author

Pneumonic plague, caused by Yersinia pestis, is a rapidly progressing lethal infection. The various phases of pneumonic plague are yet to be fully understood. A well-established way to address the pathology of infectious diseases in general, and pneu...

(This article belongs to the Special Issue Advances in RNA Biology in Pathogenic Microorganisms)
  • Review
  • Open Access
42 Citations
9,221 Views
13 Pages

The World Health Organization reports that SARS-CoV-2 has infected over 220 million people and claimed over 4.7 million lives globally. While there are new effective vaccines, the differences in behavior of variants are causing challenges in vaccine...

(This article belongs to the Special Issue SARS-CoV-2: Epidemiology and Pathogenesis)
  • Article
  • Open Access
9 Citations
4,568 Views
12 Pages

Identification of Potential Citrate Metabolism Pathways in Carnobacterium maltaromaticum

  • Heng Li,
  • Nancy E. Ramia,
  • Frédéric Borges,
  • Anne-Marie Revol-Junelles,
  • Finn Kvist Vogensen and
  • Jørgen J. Leisner

In the present study, we describe the identification of potential citrate metabolism pathways for the lactic acid bacterium (LAB) Carnobacterium maltaromaticum. A phenotypic assay indicated that four of six C. maltaromaticum strains showed weak (Cm 6...

(This article belongs to the Special Issue Functional Characterization of Lactic Acid Bacteria)
  • Article
  • Open Access
6 Citations
3,821 Views
16 Pages

New Insights into the Relationships between Bacterial Dynamics and Water Quality of Aquaculture Systems Supplemented with Carbon Source and Biofilm Substratum

  • Er-Meng Yu,
  • Zhen-Chi Li,
  • Zhi-Fei Li,
  • Guang-Jun Wang,
  • Yun Xia,
  • Kai Zhang,
  • Jing-Jing Tian,
  • Wang-Bao Gong and
  • Jun Xie

Aquaculture is crucial for achieving the FAO’s goal of a world without hunger and malnutrition. Recently, biofilm substratum has been proposed as an effective means to control waste pollution caused by excessive nutrient inputs from aquaculture, but...

(This article belongs to the Section Environmental Microbiology)
  • Article
  • Open Access
8 Citations
3,585 Views
10 Pages

Catalysis of Chlorovirus Production by the Foraging of Bursaria truncatella on Paramecia bursaria Containing Endosymbiotic Algae

  • Zeina T. Al-Ameeli,
  • Maitham A. Al-Sammak,
  • John P. DeLong,
  • David D. Dunigan and
  • James L. Van Etten

Chloroviruses are large viruses that replicate in chlorella-like green algae and normally exist as mutualistic endosymbionts (referred to as zoochlorellae) in protists such as Paramecium bursaria. Chlorovirus populations rise and fall in indigenous w...

(This article belongs to the Special Issue Viruses of Plankton)
  • Article
  • Open Access
4 Citations
2,850 Views
12 Pages

Evidence of HIV-1 Genital Shedding after One Year of Antiretroviral Therapy in Females Recently Diagnosed in Bamako, Mali

  • Abdelaye Keita,
  • Josselin Rigaill,
  • Sylvie Pillet,
  • Youssouf Sereme,
  • Souleymane Coulibaly,
  • Fodé Diallo,
  • Paul Verhoeven,
  • Bruno Pozzetto,
  • Tenin Aoua Thiero and
  • Thomas Bourlet

Little is known about the dynamic of HIV-1 shedding and resistance profiles in the female genital reservoir after antiretroviral therapy (ART) initiation in resource-limited countries (RLCs), which is critical for evaluating the residual sexual HIV-1...

(This article belongs to the Section Medical Microbiology)
  • Article
  • Open Access
10 Citations
3,050 Views
11 Pages

Characterization of “Candidatus Ehrlichia Pampeana” in Haemaphysalis juxtakochi Ticks and Gray Brocket Deer (Mazama gouazoubira) from Uruguay

  • María Laura Félix,
  • Sebastián Muñoz-Leal,
  • Luis Andrés Carvalho,
  • Diego Queirolo,
  • Susana Remesar,
  • María Teresa Armúa-Fernández and
  • José Manuel Venzal

Human ehrlichiosis are scantily documented in Uruguay. The aim of this study was to investigate the presence of Ehrlichia spp. in Haemaphysalis juxtakochi and in a gray brocket deer (Mazama gouazoubira) from Uruguay. The presence of Ehrlichia DNA was...

(This article belongs to the Section Veterinary Microbiology)
  • Article
  • Open Access
20 Citations
4,465 Views
22 Pages

Enrofloxacin Alters Fecal Microbiota and Resistome Irrespective of Its Dose in Calves

  • Ashenafi Feyisa Beyi,
  • Debora Brito-Goulart,
  • Tyler Hawbecker,
  • Brandon Ruddell,
  • Alan Hassall,
  • Renee Dewell,
  • Grant Dewell,
  • Orhan Sahin,
  • Qijing Zhang and
  • Paul J. Plummer

Enrofloxacin is a fluoroquinolone drug used to prevent and control bovine respiratory disease (BRD) complex in multiple or single doses, ranging from 7.5 to 12.5 mg/kg body weight. Here, we examined the effects of high and low doses of a single subcu...

(This article belongs to the Special Issue Antimicrobial Stewardship in Food-Producing Animals)
  • Article
  • Open Access
28 Citations
4,466 Views
13 Pages

This study was undertaken to determine the virulence and antibiotic resistance profiles of diarrhoeagenic Escherichia coli (DEC) in environmental waters of Johannesburg, South Africa. Samples were collected and cultured on selective media. An 11-plex...

(This article belongs to the Special Issue Bacterial Responses to Environmental Stress and Their Specific Contribution to Escherichia coli and Vibrio spp. Survival and Virulence 2.0)
  • Article
  • Open Access
18 Citations
5,201 Views
13 Pages

The Shiga Toxin Receptor Globotriaosylceramide as Therapeutic Target in Shiga Toxin E. coli Mediated HUS

  • Wouter J. C. Feitz,
  • Romy Bouwmeester,
  • Thea J. A. M. van der Velden,
  • Susan Goorden,
  • Christoph Licht,
  • Lambert P. J. W. van den Heuvel and
  • Nicole C. A. J. van de Kar

In 90% of the cases, childhood hemolytic uremic syndrome (HUS) is caused by an infection with the Shiga toxin (Stx) producing E. coli bacteria (STEC-HUS). Stx preferentially binds to its receptor, the glycosphingolipid, globotriaosylceramide (Gb3), p...

(This article belongs to the Special Issue Know Your Enemy: Improved Understanding, Detection, Control, and Therapy for Shiga Toxin-Producing Escherichia coli Infection)
  • Review
  • Open Access
50 Citations
11,811 Views
27 Pages

Lactobacillus kefiranofaciens: From Isolation and Taxonomy to Probiotic Properties and Applications

  • Marina Georgalaki,
  • Georgia Zoumpopoulou,
  • Rania Anastasiou,
  • Maria Kazou and
  • Effie Tsakalidou

One of the main lactic acid bacterial species found in the kefir grain ecosystem worldwide is Lactobacillus kefiranofaciens, exhibiting strong auto-aggregation capacity and, therefore, being involved in the mechanism of grain formation. Its occurrenc...

(This article belongs to the Special Issue Probiotics and Prebiotics in Animal Health and Food Safety)
  • Article
  • Open Access
7 Citations
4,086 Views
11 Pages

The Combined Use of Cytokine Serum Values with Laboratory Parameters Improves Mortality Prediction of COVID-19 Patients: The Interleukin-15-to-Albumin Ratio

  • Salma A. Rizo-Téllez,
  • Lucia A. Méndez-García,
  • Ana C. Rivera-Rugeles,
  • Marcela Miranda-García,
  • Aarón N. Manjarrez-Reyna,
  • Rebeca Viurcos-Sanabria,
  • Helena Solleiro-Villavicencio,
  • Enrique Becerril-Villanueva,
  • José D. Carrillo-Ruíz and
  • Galileo Escobedo
  • + 3 authors

Laboratory parameters display limited accuracy in predicting mortality in coronavirus disease 2019 (COVID-19) patients, as with serum albumin. Emerging evidence suggests that cytokine serum values may enhance the predictive capacity of albumin, espec...

(This article belongs to the Special Issue COVID-19: Focusing on Epidemiologic, Virologic, and Clinical Studies)
  • Review
  • Open Access
23 Citations
6,876 Views
20 Pages

Despite the implementation of preventive measures in airports and aircrafts, the risk of importing Plasmodium spp. infected mosquitoes is still present in malaria-free countries. Evidence suggests that mosquitoes have found a new alliance with the gl...

(This article belongs to the Section Parasitology)
  • Article
  • Open Access
13 Citations
4,429 Views
17 Pages

High temperature is a risk factor for vibriosis outbreaks. Most vibrios are opportunistic pathogens that cause the mortality of aquatic animals at the vibrio optimal growth temperature (~25 °C), whereas a dominant Vibrio kanaloae strain SbA1-1 is iso...

(This article belongs to the Special Issue Advances in Bacterial Fish and Shellfish Diseases in Aquaculture)
  • Review
  • Open Access
16 Citations
8,939 Views
24 Pages

The Cdk8 kinase module (CKM) of the multi-subunit mediator complex plays an essential role in cell fate decisions in response to different environmental cues. In the budding yeast S. cerevisiae, the CKM consists of four conserved subunits (cyclin C a...

(This article belongs to the Special Issue Adaptation, Aging, and Cell Death in Yeast Stress Response: Models, Mechanisms and Applications)
  • Article
  • Open Access
11 Citations
3,266 Views
18 Pages

Microbial Adhesion and Biofilm Formation on Bioactive Surfaces of Ti-35Nb-7Zr-5Ta Alloy Created by Anodization

  • Laiza Maria Grassi Fais,
  • Luana de Sales Leite,
  • Bárbara Araújo dos Reis,
  • Ana Lúcia Roselino Ribeiro,
  • Luis Geraldo Vaz and
  • Marlise Inêz Klein

This study evaluated the microbial colonization (adhesion and biofilm) on modified surfaces of a titanium alloy, Ti-35Nb-7Zr-5Ta, anodized with Ca and P or F ions, with and without silver deposition. The chemical composition, surface topography, roug...

(This article belongs to the Section Microbial Biotechnology)
  • Article
  • Open Access
19 Citations
4,539 Views
18 Pages

Serologic Evidence of Occupational Exposure to Avian Influenza Viruses at the Wildfowl/Poultry/Human Interface

  • Maria Alessandra De Marco,
  • Mauro Delogu,
  • Marzia Facchini,
  • Livia Di Trani,
  • Arianna Boni,
  • Claudia Cotti,
  • Giulia Graziosi,
  • Diana Venturini,
  • Denise Regazzi and
  • Elisabetta Raffini
  • + 4 authors

Ecological interactions between wild aquatic birds and outdoor-housed poultry can enhance spillover events of avian influenza viruses (AIVs) from wild reservoirs to domestic birds, thus increasing the related zoonotic risk to occupationally exposed w...

(This article belongs to the Special Issue Ecology of Influenza A Viruses)
  • Review
  • Open Access
17 Citations
9,548 Views
15 Pages

Whole Genome Sequencing Analysis of Salmonella enterica Serovar Typhi: History and Current Approaches

  • Wan Ratmaazila Wan Wan Makhtar,
  • Izwan Bharudin,
  • Nurul Hidayah Samsulrizal and
  • Nik Yusnoraini Yusof

In recent years, the advance in whole-genome sequencing technology has changed the study of infectious diseases. The emergence of genome sequencing has improved the understanding of infectious diseases, which has revamped many fields, such as molecul...

(This article belongs to the Special Issue Salmonella and Salmonellosis)
  • Article
  • Open Access
30 Citations
6,031 Views
24 Pages

Diversity of the Tryptophanase Gene and Its Evolutionary Implications in Living Organisms

  • Bharath Reddy Boya,
  • Prasun Kumar,
  • Jin-Hyung Lee and
  • Jintae Lee

Tryptophanase encoded by the gene tnaA is a pyridoxal phosphate-dependent enzyme that catalyses the conversion of tryptophan to indole, which is commonly used as an intra- and interspecies signalling molecule, particularly by microbes. However, the p...

(This article belongs to the Section Systems Microbiology)
  • Article
  • Open Access
9 Citations
4,536 Views
14 Pages

Environmental Drivers and Potential Distribution of Schistosoma mansoni Endemic Areas in Ethiopia

  • Keerati Ponpetch,
  • Berhanu Erko,
  • Teshome Bekana,
  • Tadesse Kebede,
  • Di Tian,
  • Yang Yang and
  • Song Liang

In Ethiopia, human schistosomiasis is caused by two species of schistosome, Schistosoma mansoni and S. haematobium, with the former being dominant in the country, causing infections of more than 5 million people and more than 37 million at risk of in...

(This article belongs to the Special Issue Schistosoma and Schistosomiasis)
  • Article
  • Open Access
4 Citations
2,542 Views
9 Pages

SARS-CoV-2 Evolution among Oncological Population: In-Depth Virological Analysis of a Clinical Cohort

  • Florian Laubscher,
  • Samuel Cordey,
  • Alex Friedlaender,
  • Cecilia Schweblin,
  • Sarah Noetzlin,
  • Pierre-François Simand,
  • Natacha Bordry,
  • Filipe De Sousa,
  • Fiona Pigny and
  • Diem-Lan Vu
  • + 4 authors

Background: Oncological patients have a higher risk of prolonged SARS-CoV-2 shedding, which, in turn, can lead to evolutionary mutations and emergence of novel viral variants. The aim of this study was to analyze biological samples of a cohort of onc...

(This article belongs to the Special Issue Viral Metagenomics and Metatranscriptomics: Virus Discovery, Ecology, and Evolution)
  • Review
  • Open Access
6 Citations
4,916 Views
14 Pages

Carbapenem Resistance among Marine Bacteria—An Emerging Threat to the Global Health Sector

  • Dewa A.P. Rasmika Dewi,
  • Torsten Thomas,
  • Ana Masara Ahmad Mokhtar,
  • Noreen Suliani Mat Nanyan,
  • Siti Balqis Zulfigar and
  • Nor Hawani Salikin

The emergence of antibiotic resistance among pathogenic microorganisms is a major issue for global public health, as it results in acute or chronic infections, debilitating diseases, and mortality. Of particular concern is the rapid and common spread...

(This article belongs to the Section Environmental Microbiology)
  • Article
  • Open Access
11 Citations
6,031 Views
30 Pages

Staphylococcus aureus Transcriptome Data and Metabolic Modelling Investigate the Interplay of Ser/Thr Kinase PknB, Its Phosphatase Stp, the glmR/yvcK Regulon and the cdaA Operon for Metabolic Adaptation

  • Chunguang Liang,
  • Ana B. Rios-Miguel,
  • Marcel Jarick,
  • Priya Neurgaonkar,
  • Myriam Girard,
  • Patrice François,
  • Jacques Schrenzel,
  • Eslam S. Ibrahim,
  • Knut Ohlsen and
  • Thomas Dandekar

Serine/threonine kinase PknB and its corresponding phosphatase Stp are important regulators of many cell functions in the pathogen S. aureus. Genome-scale gene expression data of S. aureus strain NewHG (sigB+) elucidated their effect on physiological...

(This article belongs to the Special Issue Staphylococcal Infections (Host and Pathogenic Factors) 2.0)
  • Article
  • Open Access
19 Citations
6,444 Views
15 Pages

Predicting the Role of the Human Gut Microbiome in Constipation Using Machine-Learning Methods: A Meta-Analysis

  • Yutao Chen,
  • Tong Wu,
  • Wenwei Lu,
  • Weiwei Yuan,
  • Mingluo Pan,
  • Yuan-Kun Lee,
  • Jianxin Zhao,
  • Hao Zhang,
  • Wei Chen and
  • Hongchao Wang
  • + 1 author

(1) Background: Constipation is a common condition that affects the health and the quality of life of patients. Recent studies have suggested that the gut microbiome is associated with constipation, but these studies were mainly focused on a single r...

(This article belongs to the Section Gut Microbiota)
  • Article
  • Open Access
9 Citations
6,966 Views
8 Pages

In Vitro Synergism of Penicillin and Ceftriaxone against Enterococcus faecalis

  • Lara Thieme,
  • Simon Briggs,
  • Eamon Duffy,
  • Oliwia Makarewicz and
  • Mathias W. Pletz

Enterococcus faecalis infective endocarditis is commonly treated with intravenous ampicillin/ceftriaxone combination therapy. Ampicillin, however, is unsuitable for outpatient parenteral antibiotic therapy (OPAT) regimens due to its instability in 24...

(This article belongs to the Special Issue Antimicrobial Testing (AMT))
  • Article
  • Open Access
28 Citations
4,657 Views
13 Pages

Lactic acid bacteria (LAB) are important microorganisms in food fermentation. In the food industry, bacteriophages (phages or bacterial viruses) may cause the disruption of LAB-dependent processes with product inconsistencies and economic losses. LAB...

(This article belongs to the Special Issue Siphophages Infecting Food Processing Bacteria)
  • Article
  • Open Access
3 Citations
3,787 Views
19 Pages

Investigations on the Degradation of the Bile Salt Cholate via the 9,10-Seco-Pathway Reveals the Formation of a Novel Recalcitrant Steroid Compound by a Side Reaction in Sphingobium sp. Strain Chol11

  • Franziska Maria Feller,
  • Sebastian Eilebrecht,
  • Ruslan Nedielkov,
  • Onur Yücel,
  • Julia Alvincz,
  • Gabriela Salinas,
  • Kevin Christopher Ludwig,
  • Heiko Möller and
  • Bodo Philipp

Bile salts such as cholate are steroid compounds from the digestive tracts of vertebrates, which enter the environment upon excretion, e.g., in manure. Environmental bacteria degrade bile salts aerobically via two pathway variants involving intermedi...

(This article belongs to the Section Microbial Biotechnology)
  • Case Report
  • Open Access
8 Citations
3,152 Views
7 Pages

Chromoblastomycosis Due to a Never-before-Seen Dematiaceous Fungus in a Kidney Transplant Patient

  • Hélène Guegan,
  • Marine Cailleaux,
  • François Le Gall,
  • Florence Robert-Gangneux and
  • Jean-Pierre Gangneux

Chromoblastomycosis is a neglected fungal infection of the epidermis and subcutaneous tissue that predominates in tropical areas and results from the traumatic inoculation of environmental dematiaceous filamentous fungi. We describe the case of an im...

(This article belongs to the Section Medical Microbiology)
  • Article
  • Open Access
25 Citations
3,940 Views
13 Pages

Effect of Environmental Exposures on the Gut Microbiota from Early Infancy to Two Years of Age

  • Kameron Y. Sugino,
  • Tengfei Ma,
  • Nigel Paneth and
  • Sarah S. Comstock

The gut microbiota undergoes rapid changes during infancy in response to early-life exposures. We have investigated how the infant gut bacterial community matures over time and how exposures such as human milk and antibiotic treatment alter gut micro...

(This article belongs to the Special Issue Novel Insights into the Infant Gut Microbiome and Host–Microbe Interactions)
  • Article
  • Open Access
33 Citations
6,076 Views
16 Pages

Lactic acid bacteria (LAB) are probiotic candidates that may restore the balance of microbiota populations in intestinal microbial ecosystems by controlling pathogens and thereby promoting host health. The goal of this study was to isolate potential...

(This article belongs to the Special Issue Probiotics and Intestinal Health)
  • Article
  • Open Access
30 Citations
5,972 Views
17 Pages

Consistent Prebiotic Effects of Carrot RG-I on the Gut Microbiota of Four Human Adult Donors in the SHIME® Model despite Baseline Individual Variability

  • Pieter Van den Abbeele,
  • Cindy Duysburgh,
  • Ilse Cleenwerck,
  • Ruud Albers,
  • Massimo Marzorati and
  • Annick Mercenier

The human gut microbiome is currently recognized to play a vital role in human biology and development, with diet as a major modulator. Therefore, novel indigestible polysaccharides that confer a health benefit upon their fermentation by the microbio...

(This article belongs to the Special Issue Nutritional Regulation on Gut Microbiota)
  • Review
  • Open Access
30 Citations
5,597 Views
25 Pages

Myxobacteria are fascinating and complex microbes. They prey upon other members of the soil microbiome by secreting antimicrobial proteins and metabolites, and will undergo multicellular development if starved. The genome sequence of the model myxoba...

(This article belongs to the Special Issue Myxobacteria: Physiology and Regulation)
  • Article
  • Open Access
31 Citations
4,057 Views
12 Pages

Prevalence and Risk Factors for ESBL/AmpC-E. coli in Pre-Weaned Dairy Calves on Dairy Farms in Germany

  • Laura Patricia Weber,
  • Sylvia Dreyer,
  • Maike Heppelmann,
  • Katharina Schaufler,
  • Timo Homeier-Bachmann and
  • Lisa Bachmann

The objectives of this study were to ascertain the fecal ESBL/AmpC-E. coli prevalence and to detect risk factors for their occurrence in young pre-weaned calves and their dams on large dairy farms in Germany. From 2018–2019 we investigated 2816 indiv...

(This article belongs to the Section Antimicrobial Agents and Resistance)
  • Review
  • Open Access
11 Citations
3,267 Views
16 Pages

Francisella and Antibodies

  • Klara Kubelkova and
  • Ales Macela

Immune responses to intracellular pathogens depend largely upon the activation of T helper type 1-dependent mechanisms. The contribution of B cells to establishing protective immunity has long been underestimated. Francisella tularensis, including a...

(This article belongs to the Special Issue Interaction between Francisella Species and the Host Immune System)
  • Article
  • Open Access
23 Citations
4,392 Views
17 Pages

The application and promotion of biological control agents are limited because of poor efficacy and unstable performance in the field. Screening microorganisms with high antagonistic activity, effective adaptability, and high field-survival should be...

(This article belongs to the Section Plant Microbe Interactions)
  • Case Report
  • Open Access
12 Citations
2,826 Views
7 Pages

Neoehrlichia mikurensis Causing Thrombosis and Relapsing Fever in a Lymphoma Patient Receiving Rituximab

  • Johanna Sjöwall,
  • Kristian Kling,
  • Miguel Ochoa-Figueroa,
  • Helene Zachrisson and
  • Christine Wennerås

Neoehrlichia (N.) mikurensis, an intracellular tick-borne bacterium not detected by routine blood culture, is prevalent in ticks in Scandinavia, Central Europe and Northern Asia, and may cause long-standing fever, nightly sweats, migrating pain, skin...

(This article belongs to the Section Molecular Microbiology and Immunology)
  • Article
  • Open Access
29 Citations
4,608 Views
14 Pages

Evaluation of Tetracycline Resistance and Determination of the Tentative Microbiological Cutoff Values in Lactic Acid Bacterial Species

  • Qingqing Ma,
  • Zhangming Pei,
  • Zhifeng Fang,
  • Hongchao Wang,
  • Jinlin Zhu,
  • Yuan-kun Lee,
  • Hao Zhang,
  • Jianxin Zhao,
  • Wenwei Lu and
  • Wei Chen

Lactic acid bacteria (LAB) are widely used as probiotics in the food industry owing to their beneficial effects on human health. However, numerous antibiotic resistance genes have been found in LAB strains, especially tetracycline resistance genes. N...

(This article belongs to the Section Food Microbiology)
  • Review
  • Open Access
9 Citations
3,924 Views
22 Pages

Microbiomics in Collusion with the Nervous System in Carcinogenesis: Diagnosis, Pathogenesis and Treatment

  • Rodney Hull,
  • Georgios Lolas,
  • Stylianos Makrogkikas,
  • Lasse D. Jensen,
  • Konstantinos N. Syrigos,
  • George Evangelou,
  • Llewellyn Padayachy,
  • Cyril Egbor,
  • Ravi Mehrotra and
  • Zodwa Dlamini
  • + 2 authors

The influence of the naturally occurring population of microbes on various human diseases has been a topic of much recent interest. Not surprisingly, continuously growing attention is devoted to the existence of a gut brain axis, where the microbiota...

(This article belongs to the Special Issue Microbiota: From the Environment to Humans)
  • Review
  • Open Access
33 Citations
8,708 Views
39 Pages

Composted Municipal Green Waste Infused with Biocontrol Agents to Control Plant Parasitic Nematodes—A Review

  • Franciska Tóthné Bogdányi,
  • Krisztina Boziné Pullai,
  • Pratik Doshi,
  • Eszter Erdős,
  • Lilla Diána Gilián,
  • Károly Lajos,
  • Paola Leonetti,
  • Péter István Nagy,
  • Vitantonio Pantaleo and
  • Ferenc Tóth
  • + 4 authors

The last few years have witnessed the emergence of alternative measures to control plant parasitic nematodes (PPNs). We briefly reviewed the potential of compost and the direct or indirect roles of soil-dwelling organisms against PPNs. We compiled an...

(This article belongs to the Special Issue Interactions between the Rhizosphere Microbiome and Plant Parasitic Nematodes)
  • Article
  • Open Access
11 Citations
4,203 Views
20 Pages

Ectomycorrhizal and saprotrophic fungi play pivotal roles in ecosystem functioning. Here, we studied the vertical differentiation of root-associated fungi (RAF) in temperate forests. We analysed RAF assemblages in the organic and mineral soil from 15...

(This article belongs to the Special Issue Composition and Dynamics of Plant and Soil-Associated Microbial Communities in Forest and Agricultural Ecosystems)
  • Article
  • Open Access
47 Citations
14,429 Views
14 Pages

Scalp Microbiome and Sebum Composition in Japanese Male Individuals with and without Androgenetic Alopecia

  • Kazuhiro Suzuki,
  • Mizuna Inoue,
  • Otomi Cho,
  • Rumiko Mizutani,
  • Yuri Shimizu,
  • Tohru Nagahama and
  • Takashi Sugita

The skin microbiome and sebum may be associated with inflammation-related diseases of the scalp. To assess the pathogenesis and progression of androgenetic alopecia (AGA), we analyzed the composition of sebum and the bacterial and fungal microbiomes...

(This article belongs to the Section Medical Microbiology)
  • Article
  • Open Access
11 Citations
3,319 Views
16 Pages

Neospora caninum is an intracellular protozoan parasite responsible for numerous abortion outbreaks and neonatal abnormalities in cattle. Rapid and accurate diagnosis is critical for N. caninum control owing to the lack of vaccine or drug-based contr...

(This article belongs to the Topic Veterinary Infectious Diseases)

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Microorganisms - ISSN 2076-2607