Twitter
Facebook
Mendeley
CiteULike
Open AccessThis article is
MDPI and ACS Style
- freely available
- re-usable
Viruses 2011, 3(11), 2339-2350; doi:10.3390/v3112339
Article
The Lymantria dispar IPLB-Ld652Y Cell Line Transcriptome Comprises Diverse Virus-Associated Transcripts
Received: 30 September 2011 / Revised: 12 November 2011 / Accepted: 14 November 2011 / Published: 21 November 2011
(This article belongs to the Special Issue Insect Viruses)
Download PDF [1097 KB, updated 25 November 2011;
original version uploaded 21 November 2011]
Abstract: The enhanced viral susceptibility of the gypsy moth (Lymantria dispar)-derived IPLB-Ld652Y cell line has made it a popular in vitro system for studying virus-related phenomena in the Lepidoptera. Using both single-pass EST sequencing and 454-based pyrosequencing, a transcriptomic library of 14,368 putatively unique transcripts (PUTs) was produced comprising 8,476,050 high-quality, informative bases. The gene content of the IPLB-Ld652Y transcriptome was broadly assessed via comparison with the NCBI non‑redundant protein database, and more detailed functional annotation was inferred by comparison to the Swiss-Prot subset of UniProtKB. In addition to L. dispar cellular transcripts, a diverse array of both RNA and DNA virus-associated transcripts was identified within the dataset, suggestive of a high level of viral expression and activity in IPLB-Ld652Y cells. These sequence resources will provide a sound basis for developing testable experimental hypotheses by insect virologists, and suggest a number of avenues for potential research.
Keywords:
RNA-Seq; EST; transcriptomics; IPLB-Ld652Y; Lepidoptera
This is an open access article distributed under the
Creative Commons Attribution License which permits unrestricted use, distribution,
and reproduction in any medium, provided the original work is properly cited.
Export to BibTeX | EndNote
MDPI and ACS Style
Sparks, M.E.; Gundersen-Rindal, D.E. The Lymantria dispar IPLB-Ld652Y Cell Line Transcriptome Comprises Diverse Virus-Associated Transcripts. Viruses 2011, 3, 2339-2350.
AMA StyleSparks ME, Gundersen-Rindal DE. The Lymantria dispar IPLB-Ld652Y Cell Line Transcriptome Comprises Diverse Virus-Associated Transcripts. Viruses. 2011; 3(11):2339-2350.
Chicago/Turabian StyleSparks, Michael E.; Gundersen-Rindal, Dawn E. 2011. "The Lymantria dispar IPLB-Ld652Y Cell Line Transcriptome Comprises Diverse Virus-Associated Transcripts." Viruses 3, no. 11: 2339-2350.