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Microorganisms publishes Special Issues to create collections of papers on specific topics, with the aim of building a community of authors and readers to discuss the latest research and develop new ideas and research directions. Special Issues are led by Guest Editors, who are experts on the topic and all Special Issue submissions follow MDPI's standard editorial process. The journal’s Editor-in-Chief and/or designated Editorial Board Member will oversee Guest Editor appointments and Special Issue proposals, checking their content for relevance and ensuring the suitability of the material for the journal. The papers published in a Special Issue will be collected and displayed on a dedicated page of the journal’s website. Further information on MDPI's Special Issue policies and Guest Editor responsibilities can be found here. For any inquiries related to a Special Issue, please contact the Editorial Office.

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Viral Diseases: Current Research and Future Directions

edited by

Sherif T.S. Hassan

submission deadline 30 Nov 2025 | 8 articles | Viewed by 27760

Keywords: RNA viruses; DNA viruses; virus– host interactions; immune evasion strategies; host immune response; viral epidemiology; biology and pathogenesis; virus diagnosis; viral diseases; prevention; management and treatment strategies; antiviral therapeutics; vaccine development

(This special issue belongs to the Section Virology)

Recent Advances on Microbial Interactions with Materials and Their Applications

edited by

Ruiyong Zhang

Hongwei Liu

and Fang Guan

submission deadline 30 Nov 2025 | 6 articles | Viewed by 26210

Keywords: microbiologically influenced corrosion; biofouling; biomineralization and bioleaching; elements cycle; microbial degradation.

(This special issue belongs to the Section Environmental Microbiology)

Genomics Approaches in Microbial Ecology

edited by Hugo César Ramírez-Saad and César Hernández-Rodríguez

submission deadline 30 Nov 2025 | 7 articles | Viewed by 20052

Keywords: soil microorganisms; microbes associated with plants; microbes associated with animals; microbial ecology; omics approaches; microbiomes; microbial communities; microbial symbioses; bacteria; archaea; fungi; algae; protists; viruses

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Feature Papers in Microbiomes

edited by

Pabulo Rampelotto

submission deadline 30 Nov 2025 | 9 articles | Viewed by 18949

Keywords: human microbiome; animal microbiome; environmental microbiome; marine microbiome; plant microbiome; soil microbiome; bioinformatics and computational tools; microbial interactions and functions; microbiome-associated diseases; microbiome-omics technologies; multi-omics integration; microbial network; host– microbiome interactions; microbiome-based therapies; emerging trends

(This special issue belongs to the Section Microbiomes)

Research on Biology of Dinoflagellates

edited by

Marco Villanueva

, Tania Islas-Flores and Estefanía Morales-Ruiz

submission deadline 30 Nov 2025 | 7 articles | Viewed by 16933

Keywords: dinoflagellate; molecular biology; genomics; transcriptomics; proteomics; metabolomic

(This special issue belongs to the Section Environmental Microbiology)

Advances in Veterinary Microbiology

edited by

Simone Peletto

submission deadline 30 Nov 2025 | 14 articles | Viewed by 16801

Keywords: African Swine Fever Virus; Bluetongue Virus; Arboviruses; Microbiota; Metagenomics; Brucellosis

(This special issue belongs to the Section Veterinary Microbiology)

Overview of Healthcare-Associated Infections

edited by

Tun-Chieh Chen

and

Yusen Eason Lin

submission deadline 30 Nov 2025 | 3 articles | Viewed by 15995

Keywords: infection; healthcare; public health

(This special issue belongs to the Section Medical Microbiology)

Contemporary Perspectives on Bacterial Virulence Factors

edited by Matthew Jackson and Kevin Theis

submission deadline 30 Nov 2025 | 3 articles | Viewed by 13598

Keywords: bacterial pathogens; virulence factors; immune response; staphylococcus aureus; pseudomonas aeruginosa

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Ticks and Tick-Borne Diseases in Animals, 2nd Edition

edited by

Ángeles Sonia Olmeda

and

Félix Valcárcel

submission deadline 30 Nov 2025 | 5 articles | Viewed by 11912

Keywords: tick ecology; identification; tick-borne pathogen; vectorial role and capacity; laboratory and field control; new acaricides

(This special issue belongs to the Section Veterinary Microbiology)

Microbial Nitrogen Cycle

edited by

Volker Brozel

submission deadline 30 Nov 2025 | 4 articles | Viewed by 11898

Keywords: microbial nitrogen cycle; nitrogen fixation; nitrification; denitrification; ammonification

(This special issue belongs to the Section Environmental Microbiology)

Gut Microbiota of Food Animal

edited by

Benoit St Pierre

submission deadline 30 Nov 2025 | 6 articles | Viewed by 11229

Keywords: food animals; gut health; microbiota; microbial ecology; metagenomics; bioinformatics; metabolomics; culturomics

(This special issue belongs to the Section Veterinary Microbiology)

Healthcare-Associated Infections and Antimicrobial Therapy—2nd Edition

edited by

Diamantis P. Kofteridis

and

Petros Ioannou

submission deadline 30 Nov 2025 | 7 articles | Viewed by 11182

Keywords: clinical microbiology; healthcare-associated infections; antimicrobial therapy

(This special issue belongs to the Section Medical Microbiology)

Research on Diseases of Aquatic Organisms

edited by Geovana Dotta,

Guilherme Tavares

and

Fabiana Pilarski

submission deadline 30 Nov 2025 | 6 articles | Viewed by 10903

Keywords: conservation and welfare of aquatic animals; ecotoxicology of aquatic environments; amphibian health and diseases; crustacean health and diseases; fish health and diseases; health and diseases of bivalve mollusks; health and diseases of other aquatic animals

(This special issue belongs to the Section Veterinary Microbiology)

Advances in Research on Waterborne Pathogens

edited by Ashwini S. Kucknoor

submission deadline 30 Nov 2025 | 5 articles | Viewed by 10850

Keywords: waterborne pathogens; pathogen detection; antimicrobial resistance; public health

(This special issue belongs to the Section Environmental Microbiology)

Molecular Ecology of Microalgae and Cyanobacteria

edited by

Burkhard Becker

, Karin Glaser and Ekaterina Pushkareva

submission deadline 30 Nov 2025 | 4 articles | Viewed by 10334

Keywords: microalgae; cyanobacteria; molecular omics

(This special issue belongs to the Section Environmental Microbiology)

Legionella pneumophila: A Microorganism with Thousand Faces, 2nd Edition

edited by

Teresa Maria Assunta Fasciana

submission deadline 30 Nov 2025 | 4 articles | Viewed by 10099

Keywords: Legionella pneumophila; virulence factors; biofilm; disinfection strategy

(This special issue belongs to the Section Medical Microbiology)

Nutrition and Gut Microbiome

edited by

Giuseppe Merra

submission deadline 30 Nov 2025 | 3 articles | Viewed by 9479

Keywords: nutrition; gut microbiome; diet; microbial diversity; pro-; pre- and post-biotics

(This special issue belongs to the Section Gut Microbiota)

Chemical Communication in Plant–Microbe Beneficial Interactions Between Plants and Rhizosphere Microorganisms

edited by Haichao Feng and Yunpeng Liu

submission deadline 30 Nov 2025 | 4 articles | Viewed by 9118

Keywords: plant growth-promoting rhizobacteria (PGPR); root exudates; colonization; chemotaxis; attachment; biofilm; rhizomicrobiome; plant health; recruitment; biocontrol

(This special issue belongs to the Section Plant Microbe Interactions)

Advances in Viral Disease Epidemiology and Molecular Pathogenesis

edited by

José Arellano-Galindo

submission deadline 30 Nov 2025 | 4 articles | Viewed by 9103

Keywords: epidemiology; molecular pathogenesis; host– virus interactions; genetic variation; viral transmission; vaccines and antivirals; zoonotic viruses; environmental reservoirs.

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Fungal Metabolites: Powering Pharmacological and Agricultural Frontiers

edited by

Maja Karaman

and

Ewa Zapora

submission deadline 30 Nov 2025 | 6 articles | Viewed by 8993

Keywords: fungi; fungal metabolites; polysaccharides; pharmacological applications; agricultural innovations; crop productivity; stress tolerance

(This special issue belongs to the Section Environmental Microbiology)

Bacterial Plant Communities: Diversity, Molecular Interactions, and Plant Growth Promotion, 3rd Edition

edited by

José David Flores-Félix

submission deadline 30 Nov 2025 | 6 articles | Viewed by 8480

Keywords: rhizobacteria; endophytes; epiphytes; rhizosphere; phyllosphere; plant growth-promoting bacteria; plant microbiome; plant– microbe transcriptomic; plant– microbe interactions; culturomic microbiote; quorum sensing

(This special issue belongs to the Section Plant Microbe Interactions)

Editorial Board Members’ Collection Series: Hepatitis Viruses: Who They Are and Consequences

edited by

Isabelle Chemin

and

Flor Helene Pujol

submission deadline 30 Nov 2025 | 2 articles | Viewed by 8227

Keywords: viral hepatitis; liver; pathogenesis; cancer; fibrosis; natural history; treatments; epidemiology; vaccine; genotypes

(This special issue belongs to the Section Virology)

Plant Growth—Promoting Bacteria and Plant—Soil Interactions in Harsh Environments, 2nd Edition

edited by

Blanca R. López

and

Luz De-Bashan

submission deadline 30 Nov 2025 | 5 articles | Viewed by 8215

Keywords: plant growth-promoting bacteria; endophytes; environmental stress; nitrogen fixing bacteria; P and K solubilizing bacteria; mechanisms of plant growth; PGPB-plant interaction soil microbial communities; soil rehabilitation; bacterial inoculants and biosafety

(This special issue belongs to the Section Plant Microbe Interactions)

Potential Antimicrobial Synergistic Interactions of Natural Products

edited by

Antonio Rosato

and Alexia Barbarossa

submission deadline 30 Nov 2025 | 2 articles | Viewed by 7534

Keywords: antimicrobial resistance; synergistic effect; natural substances

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Phenotyping the Athletic Gut Microbiota: The Basis of Health and Physical Performance?

edited by Jesús Álvarez-Herms

submission deadline 30 Nov 2025 | 3 articles | Viewed by 7329

Keywords: physiology; gut microbiota; exercise; hypoxia; nutrition; hyperthermia

(This special issue belongs to the Section Gut Microbiota)

Antimicrobial Stewardship: Strategies for Optimizing Antimicrobial Use and Combating Resistance

edited by

Viorica Railean

submission deadline 30 Nov 2025 | 3 articles | Viewed by 7065

Keywords: antimicrobial stewardship; antimicrobial agent; antimicrobial therapy; dosing optimization; healthcare; antimicrobial surveillance and monitoring; human medicine; veterinary medicine; multidisciplinary; stewardship programs

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Climate-Driven Effects on the Human Microbiome and Public Health

edited by

Panos Zanos

and Anna Onisiforou

submission deadline 30 Nov 2025 | 1 articles | Viewed by 6223

Keywords: climate change; human microbiome; public health

(This special issue belongs to the Section Medical Microbiology)

Pathobiology, Infection Biology and Control of Protozoan Parasites—the ONE HEALTH Approach

edited by

Cláudia Marques

Maria João Gouveia

and Susana R. Sousa

submission deadline 30 Nov 2025 | 4 articles | Viewed by 6111

Keywords: protozoan parasites; host– parasite interactions; pathobiology; disease control; ONE HEALTH

(This special issue belongs to the Section Veterinary Microbiology)

Feature Papers in Plant–Microbe Interactions in North America

edited by

Nazrul Islam

and

Susmita Das Nishu

submission deadline 30 Nov 2025 | 4 articles | Viewed by 6074

Keywords: plant– microbe interaction; plant-associated microbes; biotic and abiotic stresses; agricultural sustainability

(This special issue belongs to the Section Plant Microbe Interactions)

Emerging and Re-Emerging Infections in the Immunocompromised Host

edited by

Emanuele Palomba

submission deadline 30 Nov 2025 | 3 articles | Viewed by 5692

Keywords: opportunistic infections; immunocompromised host; solid organ transplant; HIV; AIDS; oncohematologic malignancies

(This special issue belongs to the Section Medical Microbiology)

Epidemiology of Zoonotic Pathogens

edited by

Mirela Imre

and

Marius Stelian Ilie

submission deadline 30 Nov 2025 | 6 articles | Viewed by 5519

Keywords: zoonotic; pathogen; infection

(This special issue belongs to the Section Veterinary Microbiology)

Research on Leishmania and Leishmaniasis: Second Edition

edited by

Mãrcia Dalastra Laurenti

and

Luiz Felipe Domingues Passero

submission deadline 30 Nov 2025 | 2 articles | Viewed by 4819

Keywords: leishmania; leishmaniasis; drug treatment; vaccine; host-parasite interaction

(This special issue belongs to the Section Medical Microbiology)

Bacterial Infections and Antibiotic Resistance in Veterinary Medicine, 2nd Edition

edited by

Andrea Micke Moreno

and

Luisa Zanolli Moreno

submission deadline 30 Nov 2025 | 4 articles | Viewed by 4641

Keywords: veterinary microbiology; bacterial infection; One Health; antimicrobial resistance

(This special issue belongs to the Section Veterinary Microbiology)

New Progress in Animal Herpesviruses

edited by Angélica Cristine de Almeida Campos

submission deadline 30 Nov 2025 | 2 articles | Viewed by 4567

Keywords: herpesvirus; immunology of herpesvirus; new herpesviruses and new hosts; host x virus interaction; genetic evolution of herpesvirus; oneHealth; new techniques and diagnosis; animal herpesvirus surveillance; zoonotic potential of herpesvirus

(This special issue belongs to the Section Veterinary Microbiology)

Latest Research on Clostridioides difficile

edited by

George Broukhanski

submission deadline 30 Nov 2025 | 2 articles | Viewed by 4355

Keywords: Clostridioides difficile; biology; epidemiology; pathogenicity; detection; treatment; infection control

(This special issue belongs to the Section Medical Microbiology)

Crosstalk Between Host and Pathogen: Innate Immunity, Infection and Metabolic Reprogramming

edited by Lei Xu

submission deadline 30 Nov 2025 | 3 articles | Viewed by 3665

Keywords: host-pathogen interaction; bacterial infection; bacterial secretion systems; immunometabolites; innate immunity

(This special issue belongs to the Section Medical Microbiology)

Effects of Diet and Nutrition on Gut Microbiota

edited by Heng Yuan and

Sunmin Park

submission deadline 30 Nov 2025 | 3 articles | Viewed by 3331

Keywords: gut microbiota; nutrition; MASLD; functional food; hypertension; metabolism

(This special issue belongs to the Section Gut Microbiota)

Inflammatory Bowel Disease (IBD) and Microbiome: Etiopathogenesis, Diagnosis, and Therapeutic Advances

edited by

Michael Doulberis

submission deadline 30 Nov 2025 | 1 articles | Viewed by 2940

Keywords: inflammatory bowel disease; microbiome-immune interactions; microbiome modulation; gut– brain axes; gut– liver axes

(This special issue belongs to the Section Medical Microbiology)

Bacterial Virulence and Biosurfactants

edited by

Juliana Luna

submission deadline 30 Nov 2025 | 1 articles | Viewed by 2909

Keywords: multi-resistant bacteria (MDR); resistance mechanisms; antibiotics; antimicrobial agents; drug susceptibility; green surfactants; medicinal plants; microbial nanoparticles

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Gut Microbiota, Diet, and Gastrointestinal Cancer, 2nd Edition

edited by Flavio De Maio and

Marco Cintoni

submission deadline 30 Nov 2025 | 1 articles | Viewed by 2907

Keywords: gut microbiota; diet; nutrition; gastrointestinal cancer; colorectal cancer; probiotics; prebiotics; postbiotics; radiotherapy; chemotherapy

(This special issue belongs to the Section Gut Microbiota)

Exploring the Diversity of Microbial Applications

edited by

Ihana Aguiar de Aguiar Severo

and

Anyong Hu

submission deadline 30 Nov 2025 | 2 articles | Viewed by 2761

Keywords: microbial biotechnology; microbiome; environmental microbiology; microbial applications; bioremediation; industrial microbiology; microbial metabolism

(This special issue belongs to the Section Microbial Biotechnology)

Polar Microbiome Facing Climate Change

edited by

Fabien Joux

submission deadline 30 Nov 2025 | Viewed by 2516

Keywords: polar microbiology; polar environment; climatic changes; bacteria; archaea; phytoplankton; fungi; viruses; protists; cold ecosystems; adaptation; acclimatation

(This special issue belongs to the Section Environmental Microbiology)

Waterborne Pathogen Infection and Antibiotic Resistance

edited by Louise Weaver

submission deadline 30 Nov 2025 | 1 articles | Viewed by 2331

Keywords: waterborne pathogen; waterborne diseases; drinking water; antibiotic resistance; public health and epidemiology

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Diagnosis and Pathogenesis of Infectious Diseases in Livestock

edited by Rachel J. Derscheid

submission deadline 30 Nov 2025 | 2 articles | Viewed by 2185

Keywords: diseases of cattle; diseases of swine; diseases of small ruminants; diseases of camelids; pathology of livestock diseases; molecular diagnostics; serology; bacterial disease of livestock; viral diseases of livestock; parasitic disease of livestock

(This special issue belongs to the Section Veterinary Microbiology)

Hepatitis B Virus Infection and Vaccine

edited by Nishi Prabdial-Sing

submission deadline 30 Nov 2025 | 1 articles | Viewed by 2088

Keywords: hepatitis B virus; infection; vaccine

(This special issue belongs to the Section Medical Microbiology)

Gut Microbiome Composition in Livestock and Mice

edited by

Peng Huang

and Qian Lin

submission deadline 30 Nov 2025 | 1 articles | Viewed by 2045

Keywords: gut; microbiome; livestock; mice; health

(This special issue belongs to the Section Veterinary Microbiology)

Microbial Genomics in the Age of Omics and Artificial Intelligence

edited by

Sandeep Tiwari

Arun Kumar Jaiswal

Siomar De Castro Soares

Flávia Figueira Aburjaile

and

Vasco Ariston De Carvalho Azevedo

submission deadline 30 Nov 2025 | 1 articles | Viewed by 1900

Keywords: artificial intelligence; microbial genomes; genome plasticity; next-generation sequencing; one health approach; pangenomics; reverse vaccinology

(This special issue belongs to the Section Microbial Biotechnology)

Host–Microbiota Interaction in Metabolic Diseases

edited by

Zhipeng Li

and

Weiwei He

submission deadline 30 Nov 2025 | 1 articles | Viewed by 1824

Keywords: gut microbiota; metabolic disease; obesity; diabetes; non-alcoholic fatty liver disease; multi-omics; microbial metabolites

(This special issue belongs to the Section Gut Microbiota)

Marine Microbiology: Pollution, Bioremediation and Resource Utilization

edited by Jun Wang

submission deadline 30 Nov 2025 | 1 articles | Viewed by 1638

Keywords: marine microbiology; pollution; bioremediation; resource utilization; environmental science; biotechnology; marine ecology; microbial community; ecological restoration

(This special issue belongs to the Section Environmental Microbiology)

Advances in Microbial Food Safety

edited by

Tünde Pusztahelyi

and

Szilvia Kovács

submission deadline 30 Nov 2025 | 1 articles | Viewed by 1595

Keywords: foodborne pathogens; antimicrobial resistance; rapid detection; molecular diagnostics; predictive modelling; food safety management; risk assessment; food spoilage; food hygiene; contamination control

(This special issue belongs to the Section Food Microbiology)

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